Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G14120 - ( dynamin-like protein 2b (ADL2b) )
83 Proteins interacs with AT2G14120| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
AT4G33650
   | Experimentaltwo hybridconfocal microscopy | FSW = 0.0463
| Class A:mitochondrioncytosolClass B:plastidplasma membraneperoxisomeClass D:plastid (p = 0.78)nucleus (p = 0.78)cytosol (p = 0.67) | DRP3A (DYNAMIN-RELATED PROTEIN 3A) GTP BINDING / GTPASE/ PHOSPHOINOSITIDE BINDING |
| AT3G19720
| ExperimentalAffinity Capture-Western | FSW = 0.0424
| Unknown | ARC5 (ACCUMULATION AND REPLICATION OF CHLOROPLAST 5) GTP BINDING / GTPASE |
| AT5G60390
| PredictedAffinity Capture-MS | FSW = 0.0850
| Class C:plasma membranemitochondrioncytosol | ELONGATION FACTOR 1-ALPHA / EF-1-ALPHA |
| AT3G01280
| PredictedAffinity Capture-MS | FSW = 0.0525
| Class C:plasma membranemitochondrion | VDAC1 (VOLTAGE DEPENDENT ANION CHANNEL 1) VOLTAGE-GATED ANION CHANNEL |
| AT3G60190
| PredictedPhylogenetic profile methodCo-expression | FSW = 0.0414
| Class C:plasma membranemitochondrion | ADL1E (ARABIDOPSIS DYNAMIN-LIKE 1E) GTP BINDING / GTPASE |
| AT5G52640
| Predictedsynthetic growth defect | FSW = 0.0083
| Class C:plasma membranecytosol | ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING |
| AT4G14960
| PredictedAffinity Capture-MS | FSW = 0.0158
| Class C:plasma membrane | TUA6 STRUCTURAL CONSTITUENT OF CYTOSKELETON |
| AT1G04820 | PredictedAffinity Capture-MS | FSW = 0.0273
| Class C:plasma membrane | TUA4 STRUCTURAL CONSTITUENT OF CYTOSKELETON |
| AT1G54270
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1386
| Class C:plasma membrane | EIF4A-2 ATP-DEPENDENT HELICASE/ TRANSLATION INITIATION FACTOR |
| AT3G09740
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1274
| Class C:plasma membrane | SYP71 (SYNTAXIN OF PLANTS 71) PROTEIN TRANSPORTER |
| AT4G35950
| Predictedfluorescence acceptor donor pairReconstituted Complex | FSW = 0.0351
| Class C:plasma membrane | ARAC6 (ARABIDOPSIS RAC-LIKE 6) GTP BINDING |
| AT4G36860
| PredictedAffinity Capture-MS | FSW = 0.1025
| Class C:plasma membrane | ZINC ION BINDING |
| AT4G24400
| PredictedAffinity Capture-MS | FSW = 0.1413
| Class C:plasma membrane | CIPK8 (CBL-INTERACTING PROTEIN KINASE 8) KINASE/ PROTEIN KINASE |
| AT3G53960
| Predictedsynthetic growth defect | FSW = 0.0090
| Class C:plasma membrane | PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN |
| AT3G16480
| PredictedAffinity Capture-MS | FSW = 0.0119
| Class C:mitochondrion | MPPALPHA (MITOCHONDRIAL PROCESSING PEPTIDASE ALPHA SUBUNIT) CATALYTIC/ METAL ION BINDING / METALLOENDOPEPTIDASE/ ZINC ION BINDING |
| AT2G39290
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0520
| Class C:mitochondrion | PGP1 (PHOSPHATIDYLGLYCEROLPHOSPHATE SYNTHASE 1) CDP-ALCOHOL PHOSPHATIDYLTRANSFERASE/ CDP-DIACYLGLYCEROL-GLYCEROL-3-PHOSPHATE 3-PHOSPHATIDYLTRANSFERASE |
| AT1G18600
| PredictedSynthetic Rescue | FSW = 0.0155
| Class C:mitochondrion | RBL12 (ARABIDOPSIS RHOMBOID-LIKE PROTEIN 12) |
| AT5G57015
| PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0073
| Class C:cytosol | CKL12 (CASEIN KINASE I-LIKE 12) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
| AT1G03930
| PredictedAffinity Capture-MS | FSW = 0.0211
| Class C:cytosol | ADK1 (DUAL SPECIFICITY KINASE 1) KINASE/ PROTEIN SERINE/THREONINE/TYROSINE KINASE |
| AT5G15200
| PredictedAffinity Capture-MSCo-purificationAffinity Capture-MS | FSW = 0.0207
| Unknown | 40S RIBOSOMAL PROTEIN S9 (RPS9B) |
| AT3G26590
| Predictedbiochemical | FSW = 0.0131
| Unknown | MATE EFFLUX FAMILY PROTEIN |
| AT3G19160
| PredictedAffinity Capture-MS | FSW = 0.1340
| Unknown | ATIPT8 (ATP/ADP ISOPENTENYLTRANSFERASES) ADENYLATE DIMETHYLALLYLTRANSFERASE |
| AT2G29690
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1243
| Unknown | ASA2 (ANTHRANILATE SYNTHASE 2) ANTHRANILATE SYNTHASE |
| AT1G51040
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1558
| Unknown | PHOSPHATIDYLINOSITOL 4-KINASE PUTATIVE |
| AT1G80190
| PredictedAffinity Capture-MS | FSW = 0.0372
| Unknown | PSF1 (PARTNER OF SLD FIVE 1) |
| AT4G26600
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0773
| Unknown | NUCLEOLAR PROTEIN PUTATIVE |
| AT5G06550
| Predictedtwo hybridtwo hybrid | FSW = 0.0424
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN CELL SURFACE RECEPTOR LINKED SIGNAL TRANSDUCTION EXPRESSED IN 19 PLANT STRUCTURES EXPRESSED DURING 12 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S CYCLIN-LIKE F-BOX (INTERPROIPR001810) TRANSCRIPTION FACTOR JUMONJI/ASPARTYL BETA-HYDROXYLASE (INTERPROIPR003347) TRANSCRIPTION FACTOR JUMONJI (INTERPROIPR013129) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS TRANSFERASE TRANSFERRING GLYCOSYL GROUPS (TAIRAT1G782801) HAS 1299 BLAST HITS TO 1289 PROTEINS IN 204 SPECIES ARCHAE - 0 BACTERIA - 195 METAZOA - 777 FUNGI - 106 PLANTS - 94 VIRUSES - 0 OTHER EUKARYOTES - 127 (SOURCE NCBI BLINK) |
| AT4G20440
| PredictedAffinity Capture-MS | FSW = 0.0048
| Unknown | SMB (SMALL NUCLEAR RIBONUCLEOPROTEIN ASSOCIATED PROTEIN B) |
| AT5G54840
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0581
| Unknown | SGP1 GTP BINDING |
| AT1G09060
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1643
| Unknown | TRANSCRIPTION FACTOR JUMONJI (JMJC) DOMAIN-CONTAINING PROTEIN |
| AT3G66656
| PredictedAffinity Capture-MS | FSW = 0.0159
| Unknown | AGL91 TRANSCRIPTION FACTOR |
| AT2G37470
| PredictedAffinity Capture-MS | FSW = 0.0685
| Unknown | HISTONE H2B PUTATIVE |
| AT2G41620
| Predictedtwo hybrid | FSW = 0.0109
| Unknown | NUCLEOPORIN INTERACTING COMPONENT FAMILY PROTEIN |
| AT2G38960
| Predictedbiochemical | FSW = 0.0239
| Unknown | AERO2 (ARABIDOPSIS ENDOPLASMIC RETICULUM OXIDOREDUCTINS 2) FAD BINDING / ELECTRON CARRIER/ OXIDOREDUCTASE ACTING ON SULFUR GROUP OF DONORS DISULFIDE AS ACCEPTOR / PROTEIN BINDING |
| AT3G22880
| PredictedAffinity Capture-MS | FSW = 0.0930
| Unknown | DMC1 (DISRUPTION OF MEIOTIC CONTROL 1) ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ DAMAGED DNA BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING |
| AT4G17190
| PredictedAffinity Capture-MS | FSW = 0.0402
| Unknown | FPS2 (FARNESYL DIPHOSPHATE SYNTHASE 2) DIMETHYLALLYLTRANSTRANSFERASE/ GERANYLTRANSTRANSFERASE |
| AT1G05730
| Predictedtwo hybrid | FSW = 0.0376
| Unknown | UNKNOWN PROTEIN |
| AT1G10930
| Predictedtwo hybridtwo hybrid | FSW = 0.0017
| Unknown | RECQ4A ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING |
| AT5G12390
| PredictedAffinity Capture-WesternReconstituted Complex | FSW = 0.0243
| Unknown | FIS1B (FISSION 1B) BINDING |
| AT1G15440
| PredictedAffinity Capture-MS | FSW = 0.0228
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
| AT1G34580
| PredictedAffinity Capture-MS | FSW = 0.1094
| Unknown | MONOSACCHARIDE TRANSPORTER PUTATIVE |
| AT1G44820
| PredictedAffinity Capture-MS | FSW = 0.0129
| Unknown | AMINOACYLASE PUTATIVE / N-ACYL-L-AMINO-ACID AMIDOHYDROLASE PUTATIVE |
| AT1G62880
| PredictedAffinity Capture-MS | FSW = 0.0995
| Unknown | CORNICHON FAMILY PROTEIN |
| AT1G71280
| PredictedAffinity Capture-MS | FSW = 0.1476
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE |
| AT2G03667
| PredictedAffinity Capture-MS | FSW = 0.0988
| Unknown | ASPARAGINE SYNTHASE (GLUTAMINE-HYDROLYZING) |
| AT1G66240
| PredictedAffinity Capture-MS | FSW = 0.0711
| Unknown | ATX1 (ARABIDOPSIS HOMOLOG OF ANTI-OXIDANT 1) METAL ION BINDING |
| AT2G16740
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.0946
| Unknown | UBC29 (UBIQUITIN-CONJUGATING ENZYME 29) UBIQUITIN-PROTEIN LIGASE |
| AT2G31060
| Predictedinterologs mapping | FSW = 0.0225
| Unknown | ELONGATION FACTOR FAMILY PROTEIN |
| AT2G44150
| PredictedSynthetic Lethality | FSW = 0.0096
| Unknown | ASHH3 (HISTONE-LYSINE N-METHYLTRANSFERASE ASHH3) HISTONE-LYSINE N-METHYLTRANSFERASE |
| AT3G05960
| PredictedAffinity Capture-MS | FSW = 0.1186
| Unknown | STP6 (SUGAR TRANSPORTER 6) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ MONOSACCHARIDE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
| AT3G06470
| Predictedbiochemical | FSW = 0.0326
| Unknown | GNS1/SUR4 MEMBRANE FAMILY PROTEIN |
| AT3G22480
| PredictedSynthetic Lethalityinteraction prediction | FSW = 0.0181
| Unknown | PREFOLDIN-RELATED KE2 FAMILY PROTEIN |
| AT4G11330
| PredictedAffinity Capture-MS | FSW = 0.0405
| Unknown | ATMPK5 (MAP KINASE 5) MAP KINASE/ KINASE |
| AT4G14240
| Predictedbiochemical | FSW = 0.0132
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S PROTEIN OF UNKNOWN FUNCTION DUF21 (INTERPROIPR002550) CYSTATHIONINE BETA-SYNTHASE CORE (INTERPROIPR000644) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS CBS DOMAIN-CONTAINING PROTEIN-RELATED (TAIRAT4G142301) HAS 6770 BLAST HITS TO 6657 PROTEINS IN 1347 SPECIES ARCHAE - 62 BACTERIA - 4461 METAZOA - 254 FUNGI - 179 PLANTS - 121 VIRUSES - 0 OTHER EUKARYOTES - 1693 (SOURCE NCBI BLINK) |
| AT5G13570
| Predictedtwo hybridinteraction prediction | FSW = 0.0182
| Unknown | DCP2 (DECAPPING 2) HYDROLASE/ M7G(5)PPPN DIPHOSPHATASE/ MRNA BINDING / PROTEIN HOMODIMERIZATION |
| AT5G23290
| PredictedSynthetic Lethalityinteraction prediction | FSW = 0.0244
| Unknown | PDF5 (PREFOLDIN 5) UNFOLDED PROTEIN BINDING |
| AT5G35980
| PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0173
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
| AT5G46150
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1302
| Unknown | LEM3 (LIGAND-EFFECT MODULATOR 3) FAMILY PROTEIN / CDC50 FAMILY PROTEIN |
| AT5G49510
| PredictedSynthetic Lethalityinteraction prediction | FSW = 0.0293
| Unknown | PDF3 (PREFOLDIN 3) UNFOLDED PROTEIN BINDING |
| AT2G19910
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1904
| Unknown | RNA-DEPENDENT RNA POLYMERASE FAMILY PROTEIN |
| AT2G20280
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1538
| Unknown | ZINC FINGER (CCCH-TYPE) FAMILY PROTEIN |
| AT2G20290
| PredictedAffinity Capture-MS | FSW = 0.0309
| Unknown | XIG MOTOR/ PROTEIN BINDING |
| AT2G35390
| PredictedAffinity Capture-MS | FSW = 0.0913
| Unknown | RIBOSE-PHOSPHATE PYROPHOSPHOKINASE 1 / PHOSPHORIBOSYL DIPHOSPHATE SYNTHETASE 1 (PRSI) |
| AT2G38600
| PredictedAffinity Capture-MS | FSW = 0.1452
| Unknown | ACID PHOSPHATASE CLASS B FAMILY PROTEIN |
| AT2G41530
| PredictedAffinity Capture-MS | FSW = 0.0718
| Unknown | SFGH (S-FORMYLGLUTATHIONE HYDROLASE) S-FORMYLGLUTATHIONE HYDROLASE/ HYDROLASE ACTING ON ESTER BONDS |
| AT3G02000
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0287
| Unknown | ROXY1 DISULFIDE OXIDOREDUCTASE |
| AT3G26020
| PredictedAffinity Capture-MS | FSW = 0.0208
| Unknown | SERINE/THREONINE PROTEIN PHOSPHATASE 2A (PP2A) REGULATORY SUBUNIT B PUTATIVE |
| AT3G63280
| PredictedAffinity Capture-MS | FSW = 0.0432
| Unknown | ATNEK4 (NIMA-RELATED KINASE 4) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
| AT4G26230
| PredictedAffinity Capture-MS | FSW = 0.0853
| Unknown | 60S RIBOSOMAL PROTEIN L31 (RPL31B) |
| AT4G26810
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1034
| Unknown | SWIB COMPLEX BAF60B DOMAIN-CONTAINING PROTEIN |
| AT4G35620
| PredictedAffinity Capture-MS | FSW = 0.0588
| Unknown | CYCB22 (CYCLIN B22) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
| AT4G39330
| PredictedAffinity Capture-MS | FSW = 0.1327
| Unknown | CAD9 (CINNAMYL ALCOHOL DEHYDROGENASE 9) BINDING / CATALYTIC/ OXIDOREDUCTASE/ ZINC ION BINDING |
| AT5G06150
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0615
| Unknown | CYC1BAT CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
| AT5G06420
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1089
| Unknown | ZINC FINGER (CCCH-TYPE/C3HC4-TYPE RING FINGER) FAMILY PROTEIN |
| AT5G09630
| PredictedAffinity Capture-MS | FSW = 0.1045
| Unknown | PROTEIN BINDING / ZINC ION BINDING |
| AT5G17000
| PredictedAffinity Capture-MS | FSW = 0.1344
| Unknown | NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE |
| AT5G54200
| PredictedAffinity Capture-MS | FSW = 0.1168
| Unknown | WD-40 REPEAT FAMILY PROTEIN |
| AT5G66360
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1341
| Unknown | RIBOSOMAL RNA ADENINE DIMETHYLASE FAMILY PROTEIN |
| AT1G13460
| PredictedAffinity Capture-MS | FSW = 0.0159
| Unknown | SERINE/THREONINE PROTEIN PHOSPHATASE 2A (PP2A) REGULATORY SUBUNIT B PUTATIVE |
| AT1G67890
| Predictedin vivo | FSW = 0.0233
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
| AT3G57350
| Predictedtwo hybrid | FSW = 0.0230
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN TRANSPORT LOCATED IN NUCLEAR PORE CONTAINS INTERPRO DOMAIN/S NUCLEOPORIN INTERACTING COMPONENT NUP93/NIC96 (INTERPROIPR007231) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS NUCLEOPORIN INTERACTING COMPONENT FAMILY PROTEIN (TAIRAT2G416201) HAS 234 BLAST HITS TO 230 PROTEINS IN 99 SPECIES ARCHAE - 0 BACTERIA - 3 METAZOA - 124 FUNGI - 76 PLANTS - 29 VIRUSES - 0 OTHER EUKARYOTES - 2 (SOURCE NCBI BLINK) |
| AT2G31725
| Predictedtwo hybrid | FSW = 0.0254
| Unknown | UNKNOWN PROTEIN |
| AT1G79540
| PredictedGene fusion method | FSW = 0.0115
| Unknown | PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
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