Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G14120 - ( dynamin-like protein 2b (ADL2b) )

83 Proteins interacs with AT2G14120
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT4G33650

Experimental

two hybrid

confocal microscopy

FSW = 0.0463

Class A:

mitochondrion

cytosol

Class B:

plastid

plasma membrane

peroxisome

Class D:

plastid (p = 0.78)

nucleus (p = 0.78)

cytosol (p = 0.67)

DRP3A (DYNAMIN-RELATED PROTEIN 3A) GTP BINDING / GTPASE/ PHOSPHOINOSITIDE BINDING
AT3G19720

Experimental

Affinity Capture-Western

FSW = 0.0424

Unknown

ARC5 (ACCUMULATION AND REPLICATION OF CHLOROPLAST 5) GTP BINDING / GTPASE
AT5G60390

Predicted

Affinity Capture-MS

FSW = 0.0850

Class C:

plasma membrane

mitochondrion

cytosol

ELONGATION FACTOR 1-ALPHA / EF-1-ALPHA
AT3G01280

Predicted

Affinity Capture-MS

FSW = 0.0525

Class C:

plasma membrane

mitochondrion

VDAC1 (VOLTAGE DEPENDENT ANION CHANNEL 1) VOLTAGE-GATED ANION CHANNEL
AT3G60190

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.0414

Class C:

plasma membrane

mitochondrion

ADL1E (ARABIDOPSIS DYNAMIN-LIKE 1E) GTP BINDING / GTPASE
AT5G52640

Predicted

synthetic growth defect

FSW = 0.0083

Class C:

plasma membrane

cytosol

ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING
AT4G14960

Predicted

Affinity Capture-MS

FSW = 0.0158

Class C:

plasma membrane

TUA6 STRUCTURAL CONSTITUENT OF CYTOSKELETON
AT1G04820Predicted

Affinity Capture-MS

FSW = 0.0273

Class C:

plasma membrane

TUA4 STRUCTURAL CONSTITUENT OF CYTOSKELETON
AT1G54270

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1386

Class C:

plasma membrane

EIF4A-2 ATP-DEPENDENT HELICASE/ TRANSLATION INITIATION FACTOR
AT3G09740

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1274

Class C:

plasma membrane

SYP71 (SYNTAXIN OF PLANTS 71) PROTEIN TRANSPORTER
AT4G35950

Predicted

fluorescence acceptor donor pair

Reconstituted Complex

FSW = 0.0351

Class C:

plasma membrane

ARAC6 (ARABIDOPSIS RAC-LIKE 6) GTP BINDING
AT4G36860

Predicted

Affinity Capture-MS

FSW = 0.1025

Class C:

plasma membrane

ZINC ION BINDING
AT4G24400

Predicted

Affinity Capture-MS

FSW = 0.1413

Class C:

plasma membrane

CIPK8 (CBL-INTERACTING PROTEIN KINASE 8) KINASE/ PROTEIN KINASE
AT3G53960

Predicted

synthetic growth defect

FSW = 0.0090

Class C:

plasma membrane

PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN
AT3G16480

Predicted

Affinity Capture-MS

FSW = 0.0119

Class C:

mitochondrion

MPPALPHA (MITOCHONDRIAL PROCESSING PEPTIDASE ALPHA SUBUNIT) CATALYTIC/ METAL ION BINDING / METALLOENDOPEPTIDASE/ ZINC ION BINDING
AT2G39290

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0520

Class C:

mitochondrion

PGP1 (PHOSPHATIDYLGLYCEROLPHOSPHATE SYNTHASE 1) CDP-ALCOHOL PHOSPHATIDYLTRANSFERASE/ CDP-DIACYLGLYCEROL-GLYCEROL-3-PHOSPHATE 3-PHOSPHATIDYLTRANSFERASE
AT1G18600

Predicted

Synthetic Rescue

FSW = 0.0155

Class C:

mitochondrion

RBL12 (ARABIDOPSIS RHOMBOID-LIKE PROTEIN 12)
AT5G57015

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0073

Class C:

cytosol

CKL12 (CASEIN KINASE I-LIKE 12) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT1G03930

Predicted

Affinity Capture-MS

FSW = 0.0211

Class C:

cytosol

ADK1 (DUAL SPECIFICITY KINASE 1) KINASE/ PROTEIN SERINE/THREONINE/TYROSINE KINASE
AT5G15200

Predicted

Affinity Capture-MS

Co-purification

Affinity Capture-MS

FSW = 0.0207

Unknown

40S RIBOSOMAL PROTEIN S9 (RPS9B)
AT3G26590

Predicted

biochemical

FSW = 0.0131

Unknown

MATE EFFLUX FAMILY PROTEIN
AT3G19160

Predicted

Affinity Capture-MS

FSW = 0.1340

Unknown

ATIPT8 (ATP/ADP ISOPENTENYLTRANSFERASES) ADENYLATE DIMETHYLALLYLTRANSFERASE
AT2G29690

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1243

Unknown

ASA2 (ANTHRANILATE SYNTHASE 2) ANTHRANILATE SYNTHASE
AT1G51040

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1558

Unknown

PHOSPHATIDYLINOSITOL 4-KINASE PUTATIVE
AT1G80190

Predicted

Affinity Capture-MS

FSW = 0.0372

Unknown

PSF1 (PARTNER OF SLD FIVE 1)
AT4G26600

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0773

Unknown

NUCLEOLAR PROTEIN PUTATIVE
AT5G06550

Predicted

two hybrid

two hybrid

FSW = 0.0424

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN CELL SURFACE RECEPTOR LINKED SIGNAL TRANSDUCTION EXPRESSED IN 19 PLANT STRUCTURES EXPRESSED DURING 12 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S CYCLIN-LIKE F-BOX (INTERPROIPR001810) TRANSCRIPTION FACTOR JUMONJI/ASPARTYL BETA-HYDROXYLASE (INTERPROIPR003347) TRANSCRIPTION FACTOR JUMONJI (INTERPROIPR013129) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS TRANSFERASE TRANSFERRING GLYCOSYL GROUPS (TAIRAT1G782801) HAS 1299 BLAST HITS TO 1289 PROTEINS IN 204 SPECIES ARCHAE - 0 BACTERIA - 195 METAZOA - 777 FUNGI - 106 PLANTS - 94 VIRUSES - 0 OTHER EUKARYOTES - 127 (SOURCE NCBI BLINK)
AT4G20440

Predicted

Affinity Capture-MS

FSW = 0.0048

Unknown

SMB (SMALL NUCLEAR RIBONUCLEOPROTEIN ASSOCIATED PROTEIN B)
AT5G54840

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0581

Unknown

SGP1 GTP BINDING
AT1G09060

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1643

Unknown

TRANSCRIPTION FACTOR JUMONJI (JMJC) DOMAIN-CONTAINING PROTEIN
AT3G66656

Predicted

Affinity Capture-MS

FSW = 0.0159

Unknown

AGL91 TRANSCRIPTION FACTOR
AT2G37470

Predicted

Affinity Capture-MS

FSW = 0.0685

Unknown

HISTONE H2B PUTATIVE
AT2G41620

Predicted

two hybrid

FSW = 0.0109

Unknown

NUCLEOPORIN INTERACTING COMPONENT FAMILY PROTEIN
AT2G38960

Predicted

biochemical

FSW = 0.0239

Unknown

AERO2 (ARABIDOPSIS ENDOPLASMIC RETICULUM OXIDOREDUCTINS 2) FAD BINDING / ELECTRON CARRIER/ OXIDOREDUCTASE ACTING ON SULFUR GROUP OF DONORS DISULFIDE AS ACCEPTOR / PROTEIN BINDING
AT3G22880

Predicted

Affinity Capture-MS

FSW = 0.0930

Unknown

DMC1 (DISRUPTION OF MEIOTIC CONTROL 1) ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ DAMAGED DNA BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING
AT4G17190

Predicted

Affinity Capture-MS

FSW = 0.0402

Unknown

FPS2 (FARNESYL DIPHOSPHATE SYNTHASE 2) DIMETHYLALLYLTRANSTRANSFERASE/ GERANYLTRANSTRANSFERASE
AT1G05730

Predicted

two hybrid

FSW = 0.0376

Unknown

UNKNOWN PROTEIN
AT1G10930

Predicted

two hybrid

two hybrid

FSW = 0.0017

Unknown

RECQ4A ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING
AT5G12390

Predicted

Affinity Capture-Western

Reconstituted Complex

FSW = 0.0243

Unknown

FIS1B (FISSION 1B) BINDING
AT1G15440

Predicted

Affinity Capture-MS

FSW = 0.0228

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT1G34580

Predicted

Affinity Capture-MS

FSW = 0.1094

Unknown

MONOSACCHARIDE TRANSPORTER PUTATIVE
AT1G44820

Predicted

Affinity Capture-MS

FSW = 0.0129

Unknown

AMINOACYLASE PUTATIVE / N-ACYL-L-AMINO-ACID AMIDOHYDROLASE PUTATIVE
AT1G62880

Predicted

Affinity Capture-MS

FSW = 0.0995

Unknown

CORNICHON FAMILY PROTEIN
AT1G71280

Predicted

Affinity Capture-MS

FSW = 0.1476

Unknown

DEAD/DEAH BOX HELICASE PUTATIVE
AT2G03667

Predicted

Affinity Capture-MS

FSW = 0.0988

Unknown

ASPARAGINE SYNTHASE (GLUTAMINE-HYDROLYZING)
AT1G66240

Predicted

Affinity Capture-MS

FSW = 0.0711

Unknown

ATX1 (ARABIDOPSIS HOMOLOG OF ANTI-OXIDANT 1) METAL ION BINDING
AT2G16740

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0946

Unknown

UBC29 (UBIQUITIN-CONJUGATING ENZYME 29) UBIQUITIN-PROTEIN LIGASE
AT2G31060

Predicted

interologs mapping

FSW = 0.0225

Unknown

ELONGATION FACTOR FAMILY PROTEIN
AT2G44150

Predicted

Synthetic Lethality

FSW = 0.0096

Unknown

ASHH3 (HISTONE-LYSINE N-METHYLTRANSFERASE ASHH3) HISTONE-LYSINE N-METHYLTRANSFERASE
AT3G05960

Predicted

Affinity Capture-MS

FSW = 0.1186

Unknown

STP6 (SUGAR TRANSPORTER 6) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ MONOSACCHARIDE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER
AT3G06470

Predicted

biochemical

FSW = 0.0326

Unknown

GNS1/SUR4 MEMBRANE FAMILY PROTEIN
AT3G22480

Predicted

Synthetic Lethality

interaction prediction

FSW = 0.0181

Unknown

PREFOLDIN-RELATED KE2 FAMILY PROTEIN
AT4G11330

Predicted

Affinity Capture-MS

FSW = 0.0405

Unknown

ATMPK5 (MAP KINASE 5) MAP KINASE/ KINASE
AT4G14240

Predicted

biochemical

FSW = 0.0132

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S PROTEIN OF UNKNOWN FUNCTION DUF21 (INTERPROIPR002550) CYSTATHIONINE BETA-SYNTHASE CORE (INTERPROIPR000644) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS CBS DOMAIN-CONTAINING PROTEIN-RELATED (TAIRAT4G142301) HAS 6770 BLAST HITS TO 6657 PROTEINS IN 1347 SPECIES ARCHAE - 62 BACTERIA - 4461 METAZOA - 254 FUNGI - 179 PLANTS - 121 VIRUSES - 0 OTHER EUKARYOTES - 1693 (SOURCE NCBI BLINK)
AT5G13570

Predicted

two hybrid

interaction prediction

FSW = 0.0182

Unknown

DCP2 (DECAPPING 2) HYDROLASE/ M7G(5)PPPN DIPHOSPHATASE/ MRNA BINDING / PROTEIN HOMODIMERIZATION
AT5G23290

Predicted

Synthetic Lethality

interaction prediction

FSW = 0.0244

Unknown

PDF5 (PREFOLDIN 5) UNFOLDED PROTEIN BINDING
AT5G35980

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0173

Unknown

PROTEIN KINASE FAMILY PROTEIN
AT5G46150

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1302

Unknown

LEM3 (LIGAND-EFFECT MODULATOR 3) FAMILY PROTEIN / CDC50 FAMILY PROTEIN
AT5G49510

Predicted

Synthetic Lethality

interaction prediction

FSW = 0.0293

Unknown

PDF3 (PREFOLDIN 3) UNFOLDED PROTEIN BINDING
AT2G19910

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1904

Unknown

RNA-DEPENDENT RNA POLYMERASE FAMILY PROTEIN
AT2G20280

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1538

Unknown

ZINC FINGER (CCCH-TYPE) FAMILY PROTEIN
AT2G20290

Predicted

Affinity Capture-MS

FSW = 0.0309

Unknown

XIG MOTOR/ PROTEIN BINDING
AT2G35390

Predicted

Affinity Capture-MS

FSW = 0.0913

Unknown

RIBOSE-PHOSPHATE PYROPHOSPHOKINASE 1 / PHOSPHORIBOSYL DIPHOSPHATE SYNTHETASE 1 (PRSI)
AT2G38600

Predicted

Affinity Capture-MS

FSW = 0.1452

Unknown

ACID PHOSPHATASE CLASS B FAMILY PROTEIN
AT2G41530

Predicted

Affinity Capture-MS

FSW = 0.0718

Unknown

SFGH (S-FORMYLGLUTATHIONE HYDROLASE) S-FORMYLGLUTATHIONE HYDROLASE/ HYDROLASE ACTING ON ESTER BONDS
AT3G02000

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0287

Unknown

ROXY1 DISULFIDE OXIDOREDUCTASE
AT3G26020

Predicted

Affinity Capture-MS

FSW = 0.0208

Unknown

SERINE/THREONINE PROTEIN PHOSPHATASE 2A (PP2A) REGULATORY SUBUNIT B PUTATIVE
AT3G63280

Predicted

Affinity Capture-MS

FSW = 0.0432

Unknown

ATNEK4 (NIMA-RELATED KINASE 4) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT4G26230

Predicted

Affinity Capture-MS

FSW = 0.0853

Unknown

60S RIBOSOMAL PROTEIN L31 (RPL31B)
AT4G26810

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1034

Unknown

SWIB COMPLEX BAF60B DOMAIN-CONTAINING PROTEIN
AT4G35620

Predicted

Affinity Capture-MS

FSW = 0.0588

Unknown

CYCB22 (CYCLIN B22) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR
AT4G39330

Predicted

Affinity Capture-MS

FSW = 0.1327

Unknown

CAD9 (CINNAMYL ALCOHOL DEHYDROGENASE 9) BINDING / CATALYTIC/ OXIDOREDUCTASE/ ZINC ION BINDING
AT5G06150

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0615

Unknown

CYC1BAT CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR
AT5G06420

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1089

Unknown

ZINC FINGER (CCCH-TYPE/C3HC4-TYPE RING FINGER) FAMILY PROTEIN
AT5G09630

Predicted

Affinity Capture-MS

FSW = 0.1045

Unknown

PROTEIN BINDING / ZINC ION BINDING
AT5G17000

Predicted

Affinity Capture-MS

FSW = 0.1344

Unknown

NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE
AT5G54200

Predicted

Affinity Capture-MS

FSW = 0.1168

Unknown

WD-40 REPEAT FAMILY PROTEIN
AT5G66360

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1341

Unknown

RIBOSOMAL RNA ADENINE DIMETHYLASE FAMILY PROTEIN
AT1G13460

Predicted

Affinity Capture-MS

FSW = 0.0159

Unknown

SERINE/THREONINE PROTEIN PHOSPHATASE 2A (PP2A) REGULATORY SUBUNIT B PUTATIVE
AT1G67890

Predicted

in vivo

FSW = 0.0233

Unknown

PROTEIN KINASE FAMILY PROTEIN
AT3G57350

Predicted

two hybrid

FSW = 0.0230

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN TRANSPORT LOCATED IN NUCLEAR PORE CONTAINS INTERPRO DOMAIN/S NUCLEOPORIN INTERACTING COMPONENT NUP93/NIC96 (INTERPROIPR007231) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS NUCLEOPORIN INTERACTING COMPONENT FAMILY PROTEIN (TAIRAT2G416201) HAS 234 BLAST HITS TO 230 PROTEINS IN 99 SPECIES ARCHAE - 0 BACTERIA - 3 METAZOA - 124 FUNGI - 76 PLANTS - 29 VIRUSES - 0 OTHER EUKARYOTES - 2 (SOURCE NCBI BLINK)
AT2G31725

Predicted

two hybrid

FSW = 0.0254

Unknown

UNKNOWN PROTEIN
AT1G79540

Predicted

Gene fusion method

FSW = 0.0115

Unknown

PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454