Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G14580 - ( ATPRB1 )
70 Proteins interacs with AT2G14580Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT2G14610 | PredictedShared biological functionGene fusion methodPhylogenetic profile methodCo-expression | FSW = 0.1074
| Class C:extracellular | PR1 (PATHOGENESIS-RELATED GENE 1) |
AT2G19990 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.0711
| Class C:extracellular | PR-1-LIKE (PATHOGENESIS-RELATED PROTEIN-1-LIKE) |
AT5G24090 | PredictedSynthetic Lethality | FSW = 0.0032
| Class C:extracellular | ACIDIC ENDOCHITINASE (CHIB1) |
AT4G33730 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.0509
| Class C:extracellular | PATHOGENESIS-RELATED PROTEIN PUTATIVE |
AT4G30320 | PredictedGene fusion methodCo-expression | FSW = 0.1039
| Class C:extracellular | ALLERGEN V5/TPX-1-RELATED FAMILY PROTEIN |
AT4G33710 | PredictedSynthetic Lethality | FSW = 0.0220
| Class C:extracellular | PATHOGENESIS-RELATED PROTEIN PUTATIVE |
AT3G19690 | PredictedGene fusion methodPhylogenetic profile methodCo-expression | FSW = 0.1323
| Class C:extracellular | PATHOGENESIS-RELATED PROTEIN PUTATIVE |
AT5G26130 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.0627
| Class C:extracellular | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN ENDOMEMBRANE SYSTEM EXTRACELLULAR REGION EXPRESSED IN ROOT LEAF EXPRESSED DURING LP04 FOUR LEAVES VISIBLE CONTAINS INTERPRO DOMAIN/S ALLERGEN V5/TPX-1 RELATED CONSERVED SITE (INTERPROIPR018244) ALLERGEN V5/TPX-1 RELATED (INTERPROIPR001283) SCP-LIKE EXTRACELLULAR (INTERPROIPR014044) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS PATHOGENESIS-RELATED PROTEIN PUTATIVE (TAIRAT4G337101) HAS 2282 BLAST HITS TO 2195 PROTEINS IN 288 SPECIES ARCHAE - 0 BACTERIA - 49 METAZOA - 1341 FUNGI - 231 PLANTS - 611 VIRUSES - 0 OTHER EUKARYOTES - 50 (SOURCE NCBI BLINK) |
AT4G33720 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.0353
| Class C:extracellular | PATHOGENESIS-RELATED PROTEIN PUTATIVE |
AT4G07820 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.0567
| Class C:extracellular | PATHOGENESIS-RELATED PROTEIN PUTATIVE |
AT1G50060 | PredictedGene fusion methodCo-expression | FSW = 0.0487
| Class C:extracellular | PATHOGENESIS-RELATED PROTEIN PUTATIVE |
AT2G33120 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0310
| Unknown | SAR1 (SYNAPTOBREVIN-RELATED PROTEIN 1) |
AT2G17360 | PredictedSynthetic Lethality | FSW = 0.0145
| Unknown | 40S RIBOSOMAL PROTEIN S4 (RPS4A) |
AT2G37270 | Predictedinterologs mappingSynthetic Lethality | FSW = 0.0607
| Unknown | ATRPS5B (RIBOSOMAL PROTEIN 5B) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT1G44170 | PredictedSynthetic Lethality | FSW = 0.0063
| Unknown | ALDH3H1 (ALDEHYDE DEHYDROGENASE 3H1) 3-CHLOROALLYL ALDEHYDE DEHYDROGENASE/ ALDEHYDE DEHYDROGENASE (NAD) |
AT2G29990 | PredictedSynthetic Lethality | FSW = 0.0450
| Unknown | NDA2 (ALTERNATIVE NAD(P)H DEHYDROGENASE 2) FAD BINDING / NADH DEHYDROGENASE/ OXIDOREDUCTASE |
AT4G29210 | PredictedAffinity Capture-MS | FSW = 0.0125
| Unknown | GGT4 (GAMMA-GLUTAMYL TRANSPEPTIDASE 4) GAMMA-GLUTAMYLTRANSFERASE/ GLUTATHIONE GAMMA-GLUTAMYLCYSTEINYLTRANSFERASE |
AT1G18540 | PredictedSynthetic Lethality | FSW = 0.0185
| Unknown | 60S RIBOSOMAL PROTEIN L6 (RPL6A) |
AT5G42130 | PredictedSynthetic Lethality | FSW = 0.0270
| Unknown | MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN |
AT1G10070 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0285
| Unknown | ATBCAT-2 (ARABIDOPSIS THALIANA BRANCHED-CHAIN AMINO ACID TRANSAMINASE 2) BRANCHED-CHAIN-AMINO-ACID TRANSAMINASE/ CATALYTIC |
AT3G17390 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0524
| Unknown | MTO3 (METHIONINE OVER-ACCUMULATOR 3) METHIONINE ADENOSYLTRANSFERASE |
AT3G02600 | PredictedSynthetic Lethality | FSW = 0.0129
| Unknown | LPP3 (LIPID PHOSPHATE PHOSPHATASE 3) PHOSPHATIDATE PHOSPHATASE |
AT5G23900 | PredictedSynthetic Lethality | FSW = 0.0108
| Unknown | 60S RIBOSOMAL PROTEIN L13 (RPL13D) |
AT2G37790 | PredictedSynthetic Lethality | FSW = 0.0093
| Unknown | ALDO/KETO REDUCTASE FAMILY PROTEIN |
AT1G06960 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0123
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN U2B PUTATIVE / SPLICEOSOMAL PROTEIN PUTATIVE |
AT1G79020 | PredictedSynthetic LethalityAffinity Capture-MS | FSW = 0.0185
| Unknown | TRANSCRIPTION FACTOR-RELATED |
AT5G27720 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0247
| Unknown | EMB1644 (EMBRYO DEFECTIVE 1644) |
AT2G37470 | PredictedAffinity Capture-MS | FSW = 0.0255
| Unknown | HISTONE H2B PUTATIVE |
AT5G60980 | PredictedSynthetic Lethality | FSW = 0.0082
| Unknown | NUCLEAR TRANSPORT FACTOR 2 (NTF2) FAMILY PROTEIN / RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
AT1G53530 | Predictedsynthetic growth defect | FSW = 0.0772
| Unknown | SIGNAL PEPTIDASE I FAMILY PROTEIN |
AT3G08730 | PredictedAffinity Capture-MS | FSW = 0.0228
| Unknown | PK1 (PROTEIN-SERINE KINASE 1) KINASE/ PROTEIN BINDING / PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT3G16050 | PredictedSynthetic Lethality | FSW = 0.0463
| Unknown | A37 PROTEIN HETERODIMERIZATION |
AT3G54820 | PredictedSynthetic Lethality | FSW = 0.0106
| Unknown | PIP25 (PLASMA MEMBRANE INTRINSIC PROTEIN 25) WATER CHANNEL |
AT5G63960 | Predictedinterologs mapping | FSW = 0.0471
| Unknown | EMB2780 (EMBRYO DEFECTIVE 2780) DNA BINDING / DNA-DIRECTED DNA POLYMERASE/ NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
AT1G07880 | PredictedSynthetic Lethality | FSW = 0.0212
| Unknown | ATMPK13 MAP KINASE/ KINASE |
AT1G08260 | PredictedCo-purification | FSW = 0.0228
| Unknown | TIL1 (TILTED 1) DNA BINDING / DNA-DIRECTED DNA POLYMERASE/ NUCLEIC ACID BINDING / NUCLEOTIDE BINDING / ZINC ION BINDING |
AT1G09580 | PredictedSynthetic Lethality | FSW = 0.0055
| Unknown | EMP24/GP25L/P24 FAMILY PROTEIN |
AT1G12880 | PredictedSynthetic Lethality | FSW = 0.0219
| Unknown | ATNUDT12 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 12) HYDROLASE |
AT1G26140 | PredictedAffinity Capture-MS | FSW = 0.0344
| Unknown | UNKNOWN PROTEIN |
AT1G47490 | PredictedSynthetic Lethality | FSW = 0.0100
| Unknown | ATRBP47C (ARABIDOPSIS THALIANA RNA-BINDING PROTEIN 47C) RNA BINDING |
AT1G63660 | PredictedSynthetic Lethality | FSW = 0.0381
| Unknown | GMP SYNTHASE (GLUTAMINE-HYDROLYZING) PUTATIVE / GLUTAMINE AMIDOTRANSFERASE PUTATIVE |
AT1G73810 | PredictedSynthetic Lethality | FSW = 0.0324
| Unknown | UNKNOWN PROTEIN |
AT2G01770 | PredictedSynthetic Lethality | FSW = 0.0499
| Unknown | VIT1 (VACUOLAR IRON TRANSPORTER 1) IRON ION TRANSMEMBRANE TRANSPORTER |
AT1G08910 | PredictedAffinity Capture-MS | FSW = 0.0174
| Unknown | EMB3001 (EMBRYO DEFECTIVE 3001) ZINC ION BINDING |
AT1G15440 | PredictedAffinity Capture-MS | FSW = 0.0183
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT1G34340 | PredictedAffinity Capture-MSsynthetic growth defect | FSW = 0.0767
| Unknown | ESTERASE/LIPASE/THIOESTERASE FAMILY PROTEIN |
AT2G27920 | Predictedinterologs mapping | FSW = 0.0275
| Unknown | SCPL51 (SERINE CARBOXYPEPTIDASE-LIKE 51) SERINE-TYPE CARBOXYPEPTIDASE |
AT3G06470 | PredictedAffinity Capture-MS | FSW = 0.0048
| Unknown | GNS1/SUR4 MEMBRANE FAMILY PROTEIN |
AT3G25597 | PredictedAffinity Capture-MS | FSW = 0.0449
| Unknown | UNKNOWN PROTEIN |
AT4G35620 | Predictedinterologs mapping | FSW = 0.0494
| Unknown | CYCB22 (CYCLIN B22) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT5G19360 | PredictedAffinity Capture-MS | FSW = 0.0182
| Unknown | CPK34 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT5G59890 | Predictedtwo hybrid | FSW = 0.0080
| Unknown | ADF4 (ACTIN DEPOLYMERIZING FACTOR 4) ACTIN BINDING |
AT2G17620 | PredictedSynthetic Lethality | FSW = 0.0809
| Unknown | CYCB21 (CYCLIN B21) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT2G30650 | Predictedinterologs mapping | FSW = 0.0356
| Unknown | CATALYTIC |
AT2G46650 | PredictedSynthetic Lethality | FSW = 0.0219
| Unknown | CB5-C (CYTOCHROME B5 ISOFORM C) HEME BINDING |
AT3G12490 | PredictedAffinity Capture-Western | FSW = 0.0445
| Unknown | CYSTEINE PROTEASE INHIBITOR PUTATIVE / CYSTATIN PUTATIVE |
AT3G17630 | PredictedCo-purification | FSW = 0.0356
| Unknown | ATCHX19 (CATION/H+ EXCHANGER 19) MONOVALENT CATIONPROTON ANTIPORTER/ SODIUMHYDROGEN ANTIPORTER |
AT3G43250 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0308
| Unknown | CELL CYCLE CONTROL PROTEIN-RELATED |
AT3G53730 | PredictedSynthetic Lethality | FSW = 0.0513
| Unknown | HISTONE H4 |
AT3G55020 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0891
| Unknown | RABGAP/TBC DOMAIN-CONTAINING PROTEIN |
AT3G59290 | PredictedSynthetic Lethality | FSW = 0.0495
| Unknown | EPSIN N-TERMINAL HOMOLOGY (ENTH) DOMAIN-CONTAINING PROTEIN |
AT3G62770 | PredictedSynthetic Lethality | FSW = 0.0302
| Unknown | ATATG18A |
AT4G21800 | PredictedAffinity Capture-MS | FSW = 0.0183
| Unknown | QQT2 (QUATRE-QUART2) ATP BINDING / NUCLEOTIDE BINDING |
AT4G26230 | PredictedAffinity Capture-MS | FSW = 0.0226
| Unknown | 60S RIBOSOMAL PROTEIN L31 (RPL31B) |
AT4G32850 | PredictedSynthetic Lethality | FSW = 0.0186
| Unknown | NPAP (NUCLEAR POLY(A) POLYMERASE) NUCLEOTIDYLTRANSFERASE/ PROTEIN BINDING |
AT5G01390 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0244
| Unknown | DNAJ HEAT SHOCK PROTEIN PUTATIVE |
AT5G01770 | PredictedSynthetic Lethality | FSW = 0.0043
| Unknown | RAPTOR2 (RAPTOR2) BINDING / NUCLEOTIDE BINDING |
AT5G11570 | PredictedAffinity Capture-Western | FSW = 0.0356
| Unknown | PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN |
AT5G24410 | PredictedSynthetic Lethality | FSW = 0.0116
| Unknown | GLUCOSAMINE/GALACTOSAMINE-6-PHOSPHATE ISOMERASE-RELATED |
AT5G24670 | PredictedSynthetic Lethality | FSW = 0.0182
| Unknown | CATALYTIC/ HYDROLASE/ ZINC ION BINDING |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454