Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G14610 - ( PR1 (PATHOGENESIS-RELATED GENE 1) )
35 Proteins interacs with AT2G14610Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G75040 | PredictedShared biological functionCo-expression | FSW = 0.0263
| Class C:extracellular | PR5 (PATHOGENESIS-RELATED GENE 5) |
AT2G14580 | PredictedShared biological functionGene fusion methodPhylogenetic profile methodCo-expression | FSW = 0.1074
| Class C:extracellular | ATPRB1 |
AT4G30320 | PredictedGene fusion methodCo-expression | FSW = 0.1435
| Class C:extracellular | ALLERGEN V5/TPX-1-RELATED FAMILY PROTEIN |
AT4G33720 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.0647
| Class C:extracellular | PATHOGENESIS-RELATED PROTEIN PUTATIVE |
AT3G19690 | PredictedGene fusion methodPhylogenetic profile methodCo-expression | FSW = 0.2399
| Class C:extracellular | PATHOGENESIS-RELATED PROTEIN PUTATIVE |
AT5G26130 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.1161
| Class C:extracellular | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN ENDOMEMBRANE SYSTEM EXTRACELLULAR REGION EXPRESSED IN ROOT LEAF EXPRESSED DURING LP04 FOUR LEAVES VISIBLE CONTAINS INTERPRO DOMAIN/S ALLERGEN V5/TPX-1 RELATED CONSERVED SITE (INTERPROIPR018244) ALLERGEN V5/TPX-1 RELATED (INTERPROIPR001283) SCP-LIKE EXTRACELLULAR (INTERPROIPR014044) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS PATHOGENESIS-RELATED PROTEIN PUTATIVE (TAIRAT4G337101) HAS 2282 BLAST HITS TO 2195 PROTEINS IN 288 SPECIES ARCHAE - 0 BACTERIA - 49 METAZOA - 1341 FUNGI - 231 PLANTS - 611 VIRUSES - 0 OTHER EUKARYOTES - 50 (SOURCE NCBI BLINK) |
AT1G50060 | PredictedGene fusion methodCo-expression | FSW = 0.0903
| Class C:extracellular | PATHOGENESIS-RELATED PROTEIN PUTATIVE |
AT4G36130 | Predictedinterologs mapping | FSW = 0.0779
| Unknown | 60S RIBOSOMAL PROTEIN L8 (RPL8C) |
AT2G37270 | PredictedSynthetic Lethality | FSW = 0.0588
| Unknown | ATRPS5B (RIBOSOMAL PROTEIN 5B) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT2G45200 | Predictedinterologs mapping | FSW = 0.0408
| Unknown | GOS12 (GOLGI SNARE 12) SNARE BINDING |
AT3G13080 | PredictedAffinity Capture-MSAffinity Capture-MSReconstituted ComplexAffinity Capture-MSco-fractionationCo-fractionation | FSW = 0.1180
| Unknown | ATMRP3 ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES / CHLOROPHYLL CATABOLITE TRANSPORTER/ GLUTATHIONE S-CONJUGATE-EXPORTING ATPASE |
AT5G64960 | PredictedAffinity Capture-MS | FSW = 0.0248
| Unknown | CDKC2 (CYCLIN DEPENDENT KINASE GROUP C 2) KINASE |
AT5G01410 | PredictedPhenotypic Suppression | FSW = 0.0647
| Unknown | RSR4 (REDUCED SUGAR RESPONSE 4) PROTEIN HETERODIMERIZATION/ PROTEIN HOMODIMERIZATION |
AT1G74710 | Predictedsynthetic growth defect | FSW = 0.0173
| Unknown | ISOCHORISMATE SYNTHASE 1 (ICS1) / ISOCHORISMATE MUTASE |
AT2G39290 | Predictedtwo hybrid | FSW = 0.0176
| Unknown | PGP1 (PHOSPHATIDYLGLYCEROLPHOSPHATE SYNTHASE 1) CDP-ALCOHOL PHOSPHATIDYLTRANSFERASE/ CDP-DIACYLGLYCEROL-GLYCEROL-3-PHOSPHATE 3-PHOSPHATIDYLTRANSFERASE |
AT1G19660 | PredictedAffinity Capture-MSSynthetic LethalitySynthetic LethalityAffinity Capture-MSAffinity Capture-MSco-fractionationCo-fractionationSynthetic Lethality | FSW = 0.1743
| Unknown | WOUND-RESPONSIVE FAMILY PROTEIN |
AT5G53480 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.0399
| Unknown | IMPORTIN BETA-2 PUTATIVE |
AT2G45710 | PredictedAffinity Capture-MSAffinity Capture-MSSynthetic LethalityAffinity Capture-MSAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSco-fractionationCo-fractionation | FSW = 0.4480
| Unknown | 40S RIBOSOMAL PROTEIN S27 (RPS27A) |
AT5G40480 | Predictedtwo hybrid | FSW = 0.0234
| Unknown | EMB3012 (EMBRYO DEFECTIVE 3012) |
AT1G21190 | Predictedinterologs mapping | FSW = 0.0291
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE |
AT1G53530 | PredictedSynthetic Lethality | FSW = 0.1976
| Unknown | SIGNAL PEPTIDASE I FAMILY PROTEIN |
AT2G47510 | PredictedAffinity Capture-MSAffinity Capture-MSSynthetic LethalityAffinity Capture-MSAffinity Capture-MSReconstituted Complextwo hybridco-fractionationCo-fractionationinterologs mapping | FSW = 0.1690
| Unknown | FUM1 (FUMARASE 1) CATALYTIC/ FUMARATE HYDRATASE |
AT1G12130 | PredictedPhenotypic Suppression | FSW = 0.0205
| Unknown | FLAVIN-CONTAINING MONOOXYGENASE FAMILY PROTEIN / FMO FAMILY PROTEIN |
AT1G02100 | PredictedAffinity Capture-MS | FSW = 0.0257
| Unknown | LEUCINE CARBOXYL METHYLTRANSFERASE FAMILY PROTEIN |
AT1G05830 | Predictedtwo hybrid | FSW = 0.0436
| Unknown | ATX2 (ARABIDOPSIS TRITHORAX-LIKE PROTEIN 2) DNA BINDING / HISTONE METHYLTRANSFERASE(H3-K4 SPECIFIC) |
AT1G25155 | Predictedsynthetic growth defect | FSW = 0.0162
| Unknown | ANTHRANILATE SYNTHASE BETA SUBUNIT PUTATIVE |
AT1G44820 | PredictedAffinity Capture-MS | FSW = 0.0288
| Unknown | AMINOACYLASE PUTATIVE / N-ACYL-L-AMINO-ACID AMIDOHYDROLASE PUTATIVE |
AT2G16740 | PredictedSynthetic Lethality | FSW = 0.0194
| Unknown | UBC29 (UBIQUITIN-CONJUGATING ENZYME 29) UBIQUITIN-PROTEIN LIGASE |
AT2G47090 | PredictedSynthetic Lethality | FSW = 0.0735
| Unknown | NUCLEIC ACID BINDING / PROTEIN BINDING / ZINC ION BINDING |
AT3G62770 | PredictedSynthetic LethalitySynthetic LethalitySynthetic Lethality | FSW = 0.0644
| Unknown | ATATG18A |
AT4G19880 | PredictedAffinity Capture-MSAffinity Capture-MSSynthetic LethalityAffinity Capture-MSReconstituted Complexco-fractionationCo-fractionationPhenotypic Suppression | FSW = 0.1087
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN RESPONSE TO CADMIUM ION LOCATED IN CHLOROPLAST EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S GLUTATHIONE S-TRANSFERASE PREDICTED (INTERPROIPR016639) GLUTATHIONE S-TRANSFERASE C-TERMINAL (INTERPROIPR004046) GLUTATHIONE S-TRANSFERASE C-TERMINAL-LIKE (INTERPROIPR010987) GLUTATHIONE S-TRANSFERASE/CHLORIDE CHANNEL C-TERMINAL (INTERPROIPR017933) THIOREDOXIN-LIKE FOLD (INTERPROIPR012336) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT5G450201) HAS 1635 BLAST HITS TO 1635 PROTEINS IN 489 SPECIES ARCHAE - 12 BACTERIA - 905 METAZOA - 23 FUNGI - 158 PLANTS - 57 VIRUSES - 0 OTHER EUKARYOTES - 480 (SOURCE NCBI BLINK) |
AT2G27170 | Predictedinterologs mapping | FSW = 0.0452
| Unknown | TTN7 (TITAN7) ATP BINDING / PROTEIN BINDING |
AT2G32220 | Predictedinterologs mappinginterologs mapping | FSW = 0.2070
| Unknown | 60S RIBOSOMAL PROTEIN L27 (RPL27A) |
AT3G60245 | PredictedSynthetic Lethality | FSW = 0.1519
| Unknown | 60S RIBOSOMAL PROTEIN L37A (RPL37AC) |
AT2G44150 | Predictedtwo hybrid | FSW = 0.0037
| Unknown | ASHH3 (HISTONE-LYSINE N-METHYLTRANSFERASE ASHH3) HISTONE-LYSINE N-METHYLTRANSFERASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454