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AT2G15430 - ( NRPB3 DNA binding / DNA-directed RNA polymerase/ protein dimerization )

98 Proteins interacs with AT2G15430

Locus	Method	FSW	Cellular Compartment Classification (C3)	Description
AT2G16390	Experimental Affinity Capture-MS	FSW = 0.0481	Class A: nucleus	DRD1 (DEFECTIVE IN RNA-DIRECTED DNA METHYLATION 1) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING
AT3G52090	Experimental coimmunoprecipitation	FSW = 0.3043	Class D: nucleus (p = 0.78)	NRPB11 DNA BINDING / DNA-DIRECTED RNA POLYMERASE
AT3G49250	Experimental Affinity Capture-MS	FSW = 0.0214	Unknown	DMS3 (DEFECTIVE IN MERISTEM SILENCING 3)
AT4G27090	Predicted Phenotypic Enhancement	FSW = 0.1949	Class C: nucleus	60S RIBOSOMAL PROTEIN L14 (RPL14B)
AT4G12610	Predicted interaction prediction	FSW = 0.1215	Class C: nucleus	TRANSCRIPTION INITIATION FACTOR IIF ALPHA SUBUNIT (TFIIF-ALPHA) FAMILY PROTEIN
AT1G55920	Predicted Phenotypic Enhancement	FSW = 0.0874	Class C: nucleus	ATSERAT21 (SERINE ACETYLTRANSFERASE 21) SERINE O-ACETYLTRANSFERASE
AT1G02780	Predicted Reconstituted Complex	FSW = 0.0102	Class C: nucleus	EMB2386 (EMBRYO DEFECTIVE 2386) STRUCTURAL CONSTITUENT OF RIBOSOME
AT2G44680	Predicted Phenotypic Enhancement	FSW = 0.0655	Class C: nucleus	CKB4 (CASEIN KINASE II BETA SUBUNIT 4) PROTEIN SERINE/THREONINE KINASE
AT1G21700	Predicted Phenotypic Enhancement	FSW = 0.0211	Class C: nucleus	ATSWI3C (SWITCH/SUCROSE NONFERMENTING 3C) DNA BINDING
AT1G03280	Predicted Affinity Capture-Western	FSW = 0.0598	Class C: nucleus	TRANSCRIPTION INITIATION FACTOR IIE (TFIIE) ALPHA SUBUNIT FAMILY PROTEIN / GENERAL TRANSCRIPTION FACTOR TFIIE FAMILY PROTEIN
AT3G12810	Predicted Phenotypic Enhancement	FSW = 0.1135	Class C: nucleus	PIE1 (PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING
AT3G16980	Predicted Co-purification Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-Western Co-purification Reconstituted Complex interaction prediction	FSW = 0.2877	Class C: nucleus	NRPB9A DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ NUCLEIC ACID BINDING / TRANSCRIPTION REGULATOR/ ZINC ION BINDING
AT5G35910	Predicted Phenotypic Suppression	FSW = 0.0797	Class C: nucleus	3-5 EXONUCLEASE DOMAIN-CONTAINING PROTEIN / HELICASE AND RNASE D C-TERMINAL DOMAIN-CONTAINING PROTEIN / HRDC DOMAIN-CONTAINING PROTEIN
AT4G10710	Predicted Affinity Capture-MS	FSW = 0.0710	Class C: nucleus	SPT16 (GLOBAL TRANSCRIPTION FACTOR C)
AT2G13370	Predicted Phenotypic Suppression	FSW = 0.0868	Class C: nucleus	CHR5 (CHROMATIN REMODELING 5) ATP BINDING / DNA BINDING / CHROMATIN BINDING / HELICASE/ NUCLEIC ACID BINDING
AT1G53165	Predicted Phenotypic Enhancement	FSW = 0.1179	Class C: nucleus	ATMAP4K ALPHA1 ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE
AT2G38560	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.1947	Class C: nucleus	TFIIS (TRANSCRIPT ELONGATION FACTOR IIS) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION ELONGATION FACTOR/ TRANSCRIPTION FACTOR
AT4G08350	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS	FSW = 0.1301	Class C: nucleus	GTA2 (GLOBAL TRANSCRIPTION FACTOR GROUP A2) STRUCTURAL CONSTITUENT OF RIBOSOME / TRANSCRIPTION ELONGATION REGULATOR/ TRANSCRIPTION FACTOR
AT2G36740	Predicted Phenotypic Enhancement	FSW = 0.1584	Class C: nucleus	SWC2 DNA BINDING / TRANSCRIPTION FACTOR
AT4G39160	Predicted Phenotypic Enhancement	FSW = 0.0488	Class C: nucleus	DNA BINDING / TRANSCRIPTION FACTOR
AT5G16780	Predicted two hybrid	FSW = 0.0206	Class C: nucleus	DOT2 (DEFECTIVELY ORGANIZED TRIBUTARIES 2)
AT2G43810	Predicted Phenotypic Enhancement	FSW = 0.1479	Class C: nucleus	SMALL NUCLEAR RIBONUCLEOPROTEIN F PUTATIVE / U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN PUTATIVE / SM PROTEIN F PUTATIVE
AT5G09920	Predicted Affinity Capture-MS Reconstituted Complex Co-purification interaction prediction	FSW = 0.2660	Class C: nucleus	NRPB4 DNA-DIRECTED RNA POLYMERASE
AT5G18620	Predicted Phenotypic Suppression	FSW = 0.0399	Class C: nucleus	CHR17 (CHROMATIN REMODELING FACTOR17) ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ HELICASE/ HYDROLASE ACTING ON ACID ANHYDRIDES IN PHOSPHORUS-CONTAINING ANHYDRIDES / NUCLEIC ACID BINDING / NUCLEOSOME BINDING
AT3G47520	Predicted Phenotypic Enhancement	FSW = 0.0496	Unknown	MDH (MALATE DEHYDROGENASE) L-MALATE DEHYDROGENASE/ BINDING / CATALYTIC/ MALATE DEHYDROGENASE/ OXIDOREDUCTASE/ OXIDOREDUCTASE ACTING ON THE CH-OH GROUP OF DONORS NAD OR NADP AS ACCEPTOR
AT2G05630	Predicted two hybrid	FSW = 0.0200	Unknown	AUTOPHAGY 8D (APG8D)
AT4G18160	Predicted Affinity Capture-MS Affinity Capture-Western co-fractionation Co-fractionation Affinity Capture-MS	FSW = 0.0212	Unknown	KCO6 OUTWARD RECTIFIER POTASSIUM CHANNEL
AT3G62870	Predicted synthetic growth defect	FSW = 0.0177	Unknown	60S RIBOSOMAL PROTEIN L7A (RPL7AB)
AT5G13710	Predicted Phenotypic Enhancement	FSW = 0.0288	Unknown	SMT1 (STEROL METHYLTRANSFERASE 1) STEROL 24-C-METHYLTRANSFERASE
AT5G57870	Predicted Synthetic Lethality	FSW = 0.0118	Unknown	EUKARYOTIC TRANSLATION INITIATION FACTOR 4F PUTATIVE / EIF-4F PUTATIVE
AT3G11940	Predicted Synthetic Lethality	FSW = 0.0311	Unknown	ATRPS5A (RIBOSOMAL PROTEIN 5A) STRUCTURAL CONSTITUENT OF RIBOSOME
AT4G35800	Predicted Co-purification Co-purification Affinity Capture-Western Reconstituted Complex Affinity Capture-MS Affinity Capture-MS Co-purification Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Co-purification Affinity Capture-MS Affinity Capture-MS Affinity Capture-Western Affinity Capture-Western Co-crystal Structure Co-purification co-fractionation Co-fractionation far western blotting Reconstituted Complex	FSW = 0.2032	Unknown	NRPB1 (RNA POLYMERASE II LARGE SUBUNIT) DNA BINDING / DNA-DIRECTED RNA POLYMERASE
AT5G56030	Predicted Affinity Capture-MS	FSW = 0.0159	Unknown	HSP81-2 (HEAT SHOCK PROTEIN 81-2) ATP BINDING
AT5G52640	Predicted Affinity Capture-MS	FSW = 0.0333	Unknown	ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING
AT1G16300	Predicted Co-purification	FSW = 0.0282	Unknown	GAPCP-2 NAD OR NADH BINDING / BINDING / CATALYTIC/ GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE (PHOSPHORYLATING)/ GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE
AT3G43810	Predicted Reconstituted Complex interaction prediction	FSW = 0.0061	Unknown	CAM7 (CALMODULIN 7) CALCIUM ION BINDING
AT4G26110	Predicted Phenotypic Enhancement	FSW = 0.0243	Unknown	NAP11 (NUCLEOSOME ASSEMBLY PROTEIN11) DNA BINDING
AT5G47930	Predicted two hybrid	FSW = 0.0220	Unknown	40S RIBOSOMAL PROTEIN S27 (RPS27D)
AT5G26340	Predicted Phenotypic Enhancement	FSW = 0.0576	Unknown	MSS1 CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ HEXOSEHYDROGEN SYMPORTER/ HIGH-AFFINITY HYDROGENGLUCOSE SYMPORTER/ SUGARHYDROGEN SYMPORTER
AT4G19690	Predicted Synthetic Rescue	FSW = 0.0189	Unknown	IRT1 (IRON-REGULATED TRANSPORTER 1) CADMIUM ION TRANSMEMBRANE TRANSPORTER/ COPPER UPTAKE TRANSMEMBRANE TRANSPORTER/ IRON ION TRANSMEMBRANE TRANSPORTER/ MANGANESE ION TRANSMEMBRANE TRANSPORTER/ ZINC ION TRANSMEMBRANE TRANSPORTER
AT1G69850	Predicted Phenotypic Enhancement	FSW = 0.0514	Unknown	ATNRT12 (ARABIDOPSIS THALIANA NITRATE TRANSPORTER 12) CALCIUM ION BINDING / TRANSPORTER
AT2G18040	Predicted Affinity Capture-MS interaction prediction	FSW = 0.0565	Unknown	PIN1AT (PEPTIDYLPROLYL CIS/TRANS ISOMERASE NIMA-INTERACTING 1) PEPTIDYL-PROLYL CIS-TRANS ISOMERASE
AT2G44950	Predicted Phenotypic Enhancement	FSW = 0.1188	Unknown	HUB1 (HISTONE MONO-UBIQUITINATION 1) PROTEIN BINDING / PROTEIN HOMODIMERIZATION/ UBIQUITIN-PROTEIN LIGASE/ ZINC ION BINDING
AT1G75510	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-Western Co-purification interaction prediction	FSW = 0.4075	Unknown	TRANSCRIPTION INITIATION FACTOR IIF BETA SUBUNIT (TFIIF-BETA) FAMILY PROTEIN
AT4G33730	Predicted Phenotypic Enhancement	FSW = 0.0864	Unknown	PATHOGENESIS-RELATED PROTEIN PUTATIVE
AT5G28060	Predicted Phenotypic Enhancement	FSW = 0.1460	Unknown	40S RIBOSOMAL PROTEIN S24 (RPS24B)
AT5G19910	Predicted Phenotypic Enhancement	FSW = 0.2347	Unknown	SOH1 FAMILY PROTEIN
AT4G21710	Predicted interaction prediction Co-purification Co-purification Co-purification Affinity Capture-Western two hybrid Affinity Capture-Western Affinity Capture-MS co-fractionation Co-fractionation Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Co-crystal Structure Affinity Capture-MS Affinity Capture-Western Co-purification co-fractionation Co-fractionation two hybrid Reconstituted Complex interologs mapping interaction prediction Enriched domain pair	FSW = 0.2022	Unknown	NRPB2 DNA BINDING / DNA-DIRECTED RNA POLYMERASE
AT4G26840	Predicted Affinity Capture-MS	FSW = 0.0229	Unknown	SUMO1 (SMALL UBIQUITIN-LIKE MODIFIER 1) PROTEIN BINDING / PROTEIN TAG
AT1G61700	Predicted Reconstituted Complex Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS far western blotting Reconstituted Complex Affinity Capture-Western Co-purification	FSW = 0.1754	Unknown	DNA-DIRECTED RNA POLYMERASE II PUTATIVE (RPB10)
AT2G15400	Predicted Gene neighbors method Phylogenetic profile method	FSW = 0.4165	Unknown	NRPE3B DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION
AT5G59180	Predicted Co-purification Co-purification Affinity Capture-Western Affinity Capture-MS Co-purification Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Co-purification Affinity Capture-Western Reconstituted Complex interaction prediction	FSW = 0.2940	Unknown	NRPB7 DNA-DIRECTED RNA POLYMERASE/ RNA BINDING
AT2G29540	Predicted two hybrid interaction prediction Enriched domain pair	FSW = 0.0170	Unknown	ATRPC14 (RNA POLYMERASE 14 KDA SUBUNIT) DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION
AT5G41010	Predicted in vitro Reconstituted Complex Affinity Capture-MS Co-crystal Structure Affinity Capture-MS Reconstituted Complex Affinity Capture-Western Co-purification interaction prediction Enriched domain pair	FSW = 0.1781	Unknown	NRPB12 DNA BINDING / DNA-DIRECTED RNA POLYMERASE
AT5G41910	Predicted Affinity Capture-MS	FSW = 0.1611	Unknown	RNA POLYMERASE II MEDIATOR COMPLEX PROTEIN-RELATED
AT5G51940	Predicted in vitro Affinity Capture-Western Reconstituted Complex Affinity Capture-Western Affinity Capture-MS Co-purification Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-Western Affinity Capture-MS Co-purification Reconstituted Complex	FSW = 0.2589	Unknown	NRPB6A DNA BINDING / DNA-DIRECTED RNA POLYMERASE
AT1G07340	Predicted Affinity Capture-Western	FSW = 0.0342	Unknown	ATSTP2 (SUGAR TRANSPORTER 2) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ MONOSACCHARIDE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER
AT1G34150	Predicted Phenotypic Suppression	FSW = 0.0851	Unknown	TRNA PSEUDOURIDINE SYNTHASE FAMILY PROTEIN
AT1G51710	Predicted Phenotypic Enhancement	FSW = 0.0906	Unknown	UBP6 (UBIQUITIN-SPECIFIC PROTEASE 6) CALMODULIN BINDING / UBIQUITIN-SPECIFIC PROTEASE
AT1G54250	Predicted Co-purification Co-purification Reconstituted Complex Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Co-purification Reconstituted Complex Affinity Capture-Western interaction prediction	FSW = 0.2147	Unknown	NRPB8A DNA-DIRECTED RNA POLYMERASE
AT1G61670	Predicted Phenotypic Enhancement Synthetic Lethality	FSW = 0.1161	Unknown	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN LOCATED IN ENDOMEMBRANE SYSTEM INTEGRAL TO MEMBRANE CONTAINS INTERPRO DOMAIN/S TRANSMEMBRANE RECEPTOR EUKARYOTA (INTERPROIPR009637) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G109801) HAS 473 BLAST HITS TO 471 PROTEINS IN 125 SPECIES ARCHAE - 0 BACTERIA - 2 METAZOA - 242 FUNGI - 99 PLANTS - 92 VIRUSES - 0 OTHER EUKARYOTES - 38 (SOURCE NCBI BLINK)
AT1G76920	Predicted Phenotypic Suppression	FSW = 0.0715	Unknown	F-BOX FAMILY PROTEIN (FBX3)
AT1G04730	Predicted Phenotypic Suppression	FSW = 0.0490	Unknown	AAA-TYPE ATPASE FAMILY PROTEIN
AT1G06830	Predicted Phenotypic Enhancement	FSW = 0.0259	Unknown	GLUTAREDOXIN FAMILY PROTEIN
AT1G15780	Predicted Phenotypic Enhancement two hybrid	FSW = 0.1440	Unknown	UNKNOWN PROTEIN
AT1G18830	Predicted Phenotypic Enhancement	FSW = 0.0754	Unknown	TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT1G32130	Predicted Affinity Capture-MS	FSW = 0.1510	Unknown	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 25 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S TFIIS N-TERMINAL (INTERPROIPR017923) IWS1 C-TERMINAL (INTERPROIPR008654) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS IWS1 C-TERMINUS FAMILY PROTEIN (TAIRAT4G190001) HAS 907 BLAST HITS TO 871 PROTEINS IN 182 SPECIES ARCHAE - 4 BACTERIA - 14 METAZOA - 417 FUNGI - 195 PLANTS - 42 VIRUSES - 8 OTHER EUKARYOTES - 227 (SOURCE NCBI BLINK)
AT1G49540	Predicted Affinity Capture-Western Co-purification	FSW = 0.1684	Unknown	NUCLEOTIDE BINDING
AT1G52740	Predicted Phenotypic Enhancement	FSW = 0.1680	Unknown	HTA9 (HISTONE H2A PROTEIN 9) DNA BINDING
AT1G55810	Predicted two hybrid	FSW = 0.0086	Unknown	URACIL PHOSPHORIBOSYLTRANSFERASE PUTATIVE / UMP PYROPHOSPHORYLASE PUTATIVE / UPRTASE PUTATIVE
AT1G59890	Predicted Phenotypic Suppression	FSW = 0.1108	Unknown	SNL5 (SIN3-LIKE 5)
AT2G19160	Predicted Affinity Capture-MS Affinity Capture-Western	FSW = 0.0282	Unknown	UNKNOWN PROTEIN
AT2G29190	Predicted Phenotypic Enhancement	FSW = 0.1112	Unknown	APUM2 (ARABIDOPSIS PUMILIO 2) RNA BINDING / BINDING
AT2G44150	Predicted Affinity Capture-Western Affinity Capture-MS Phenotypic Enhancement	FSW = 0.2068	Unknown	ASHH3 (HISTONE-LYSINE N-METHYLTRANSFERASE ASHH3) HISTONE-LYSINE N-METHYLTRANSFERASE
AT2G47090	Predicted Synthetic Lethality	FSW = 0.0193	Unknown	NUCLEIC ACID BINDING / PROTEIN BINDING / ZINC ION BINDING
AT3G04710	Predicted Phenotypic Enhancement	FSW = 0.0448	Unknown	ANKYRIN REPEAT FAMILY PROTEIN
AT3G05960	Predicted Phenotypic Enhancement	FSW = 0.0360	Unknown	STP6 (SUGAR TRANSPORTER 6) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ MONOSACCHARIDE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER
AT3G22320	Predicted Co-purification Co-purification Affinity Capture-Western Reconstituted Complex Reconstituted Complex Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Co-purification Reconstituted Complex Affinity Capture-Western interaction prediction	FSW = 0.2017	Unknown	NRPB5 DNA BINDING / DNA-DIRECTED RNA POLYMERASE
AT5G10260	Predicted Phenotypic Enhancement	FSW = 0.0932	Unknown	ATRABH1E (ARABIDOPSIS RAB GTPASE HOMOLOG H1E) GTP BINDING
AT5G10790	Predicted Phenotypic Suppression	FSW = 0.1051	Unknown	UBP22 (UBIQUITIN-SPECIFIC PROTEASE 22) UBIQUITIN THIOLESTERASE/ UBIQUITIN-SPECIFIC PROTEASE/ ZINC ION BINDING
AT5G27970	Predicted Phenotypic Enhancement	FSW = 0.0632	Unknown	BINDING
AT5G46030	Predicted Phenotypic Enhancement	FSW = 0.0979	Unknown	UNKNOWN PROTEIN
AT5G50320	Predicted Phenotypic Enhancement	FSW = 0.1231	Unknown	ELO3 (ELONGATA 3) HISTONE ACETYLTRANSFERASE
AT5G57190	Predicted Phenotypic Enhancement	FSW = 0.1689	Unknown	PSD2 (PHOSPHATIDYLSERINE DECARBOXYLASE 2) PHOSPHATIDYLSERINE DECARBOXYLASE
AT5G63670	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.2599	Unknown	SPT42 (SPT4 HOMOLOG 2) POSITIVE TRANSCRIPTION ELONGATION FACTOR/ ZINC ION BINDING
AT3G21060	Predicted Phenotypic Enhancement	FSW = 0.1386	Unknown	TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT3G54380	Predicted Phenotypic Enhancement	FSW = 0.0989	Unknown	SAC3/GANP FAMILY PROTEIN
AT4G04210	Predicted Synthetic Lethality	FSW = 0.0618	Unknown	PUX4 PROTEIN BINDING
AT4G33240	Predicted Phenotypic Enhancement	FSW = 0.0786	Unknown	1-PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE/ ATP BINDING / PHOSPHATIDYLINOSITOL PHOSPHATE KINASE/ PROTEIN BINDING / ZINC ION BINDING
AT5G03220	Predicted Affinity Capture-Western interaction prediction	FSW = 0.0895	Unknown	TRANSCRIPTIONAL CO-ACTIVATOR-RELATED
AT5G41700	Predicted Phenotypic Suppression	FSW = 0.0405	Unknown	UBC8 (UBIQUITIN CONJUGATING ENZYME 8) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT5G52200	Predicted Synthetic Lethality	FSW = 0.0913	Unknown	UNKNOWN PROTEIN
AT5G66100	Predicted Phenotypic Enhancement	FSW = 0.0836	Unknown	LA DOMAIN-CONTAINING PROTEIN
AT5G67320	Predicted Phenotypic Enhancement	FSW = 0.0633	Unknown	HOS15 (HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 15)
AT5G58003	Predicted Affinity Capture-MS Co-purification	FSW = 0.2990	Unknown	CPL4 (C-TERMINAL DOMAIN PHOSPHATASE-LIKE 4) PHOSPHOPROTEIN PHOSPHATASE
AT5G02820	Predicted two hybrid	FSW = 0.0200	Unknown	RHL2 (ROOT HAIRLESS 2) ATP BINDING / DNA BINDING / DNA TOPOISOMERASE (ATP-HYDROLYZING)/ IDENTICAL PROTEIN BINDING / PROTEIN BINDING
AT5G13680	Predicted interaction prediction	FSW = 0.1589	Unknown	ABO1 (ABA-OVERLY SENSITIVE 1) TRANSCRIPTION ELONGATION REGULATOR
AT3G05670	Predicted interaction prediction	FSW = 0.1151	Unknown	PHD FINGER FAMILY PROTEIN

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Proteins

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from

Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment

Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment

Class C: Same as Class A but the PPI is predicted

Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB

Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

Welcome to AtPIN

AtPIN will be upgraded. Please send your suggestions here

AT2G15430 - ( NRPB3 DNA binding / DNA-directed RNA polymerase/ protein dimerization )

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