Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G15430 - ( NRPB3 DNA binding / DNA-directed RNA polymerase/ protein dimerization )

98 Proteins interacs with AT2G15430
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT2G16390

Experimental

Affinity Capture-MS

FSW = 0.0481

Class A:

nucleus

DRD1 (DEFECTIVE IN RNA-DIRECTED DNA METHYLATION 1) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING
AT3G52090

Experimental

coimmunoprecipitation

FSW = 0.3043

Class D:

nucleus (p = 0.78)

NRPB11 DNA BINDING / DNA-DIRECTED RNA POLYMERASE
AT3G49250

Experimental

Affinity Capture-MS

FSW = 0.0214

Unknown

DMS3 (DEFECTIVE IN MERISTEM SILENCING 3)
AT4G27090

Predicted

Phenotypic Enhancement

FSW = 0.1949

Class C:

nucleus

60S RIBOSOMAL PROTEIN L14 (RPL14B)
AT4G12610

Predicted

interaction prediction

FSW = 0.1215

Class C:

nucleus

TRANSCRIPTION INITIATION FACTOR IIF ALPHA SUBUNIT (TFIIF-ALPHA) FAMILY PROTEIN
AT1G55920

Predicted

Phenotypic Enhancement

FSW = 0.0874

Class C:

nucleus

ATSERAT21 (SERINE ACETYLTRANSFERASE 21) SERINE O-ACETYLTRANSFERASE
AT1G02780

Predicted

Reconstituted Complex

FSW = 0.0102

Class C:

nucleus

EMB2386 (EMBRYO DEFECTIVE 2386) STRUCTURAL CONSTITUENT OF RIBOSOME
AT2G44680

Predicted

Phenotypic Enhancement

FSW = 0.0655

Class C:

nucleus

CKB4 (CASEIN KINASE II BETA SUBUNIT 4) PROTEIN SERINE/THREONINE KINASE
AT1G21700

Predicted

Phenotypic Enhancement

FSW = 0.0211

Class C:

nucleus

ATSWI3C (SWITCH/SUCROSE NONFERMENTING 3C) DNA BINDING
AT1G03280

Predicted

Affinity Capture-Western

FSW = 0.0598

Class C:

nucleus

TRANSCRIPTION INITIATION FACTOR IIE (TFIIE) ALPHA SUBUNIT FAMILY PROTEIN / GENERAL TRANSCRIPTION FACTOR TFIIE FAMILY PROTEIN
AT3G12810

Predicted

Phenotypic Enhancement

FSW = 0.1135

Class C:

nucleus

PIE1 (PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING
AT3G16980

Predicted

Co-purification

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

Co-purification

Reconstituted Complex

interaction prediction

FSW = 0.2877

Class C:

nucleus

NRPB9A DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ NUCLEIC ACID BINDING / TRANSCRIPTION REGULATOR/ ZINC ION BINDING
AT5G35910

Predicted

Phenotypic Suppression

FSW = 0.0797

Class C:

nucleus

3-5 EXONUCLEASE DOMAIN-CONTAINING PROTEIN / HELICASE AND RNASE D C-TERMINAL DOMAIN-CONTAINING PROTEIN / HRDC DOMAIN-CONTAINING PROTEIN
AT4G10710

Predicted

Affinity Capture-MS

FSW = 0.0710

Class C:

nucleus

SPT16 (GLOBAL TRANSCRIPTION FACTOR C)
AT2G13370

Predicted

Phenotypic Suppression

FSW = 0.0868

Class C:

nucleus

CHR5 (CHROMATIN REMODELING 5) ATP BINDING / DNA BINDING / CHROMATIN BINDING / HELICASE/ NUCLEIC ACID BINDING
AT1G53165

Predicted

Phenotypic Enhancement

FSW = 0.1179

Class C:

nucleus

ATMAP4K ALPHA1 ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE
AT2G38560

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1947

Class C:

nucleus

TFIIS (TRANSCRIPT ELONGATION FACTOR IIS) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION ELONGATION FACTOR/ TRANSCRIPTION FACTOR
AT4G08350

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1301

Class C:

nucleus

GTA2 (GLOBAL TRANSCRIPTION FACTOR GROUP A2) STRUCTURAL CONSTITUENT OF RIBOSOME / TRANSCRIPTION ELONGATION REGULATOR/ TRANSCRIPTION FACTOR
AT2G36740

Predicted

Phenotypic Enhancement

FSW = 0.1584

Class C:

nucleus

SWC2 DNA BINDING / TRANSCRIPTION FACTOR
AT4G39160

Predicted

Phenotypic Enhancement

FSW = 0.0488

Class C:

nucleus

DNA BINDING / TRANSCRIPTION FACTOR
AT5G16780

Predicted

two hybrid

FSW = 0.0206

Class C:

nucleus

DOT2 (DEFECTIVELY ORGANIZED TRIBUTARIES 2)
AT2G43810

Predicted

Phenotypic Enhancement

FSW = 0.1479

Class C:

nucleus

SMALL NUCLEAR RIBONUCLEOPROTEIN F PUTATIVE / U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN PUTATIVE / SM PROTEIN F PUTATIVE
AT5G09920

Predicted

Affinity Capture-MS

Reconstituted Complex

Co-purification

interaction prediction

FSW = 0.2660

Class C:

nucleus

NRPB4 DNA-DIRECTED RNA POLYMERASE
AT5G18620

Predicted

Phenotypic Suppression

FSW = 0.0399

Class C:

nucleus

CHR17 (CHROMATIN REMODELING FACTOR17) ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ HELICASE/ HYDROLASE ACTING ON ACID ANHYDRIDES IN PHOSPHORUS-CONTAINING ANHYDRIDES / NUCLEIC ACID BINDING / NUCLEOSOME BINDING
AT3G47520

Predicted

Phenotypic Enhancement

FSW = 0.0496

Unknown

MDH (MALATE DEHYDROGENASE) L-MALATE DEHYDROGENASE/ BINDING / CATALYTIC/ MALATE DEHYDROGENASE/ OXIDOREDUCTASE/ OXIDOREDUCTASE ACTING ON THE CH-OH GROUP OF DONORS NAD OR NADP AS ACCEPTOR
AT2G05630

Predicted

two hybrid

FSW = 0.0200

Unknown

AUTOPHAGY 8D (APG8D)
AT4G18160

Predicted

Affinity Capture-MS

Affinity Capture-Western

co-fractionation

Co-fractionation

Affinity Capture-MS

FSW = 0.0212

Unknown

KCO6 OUTWARD RECTIFIER POTASSIUM CHANNEL
AT3G62870

Predicted

synthetic growth defect

FSW = 0.0177

Unknown

60S RIBOSOMAL PROTEIN L7A (RPL7AB)
AT5G13710

Predicted

Phenotypic Enhancement

FSW = 0.0288

Unknown

SMT1 (STEROL METHYLTRANSFERASE 1) STEROL 24-C-METHYLTRANSFERASE
AT5G57870

Predicted

Synthetic Lethality

FSW = 0.0118

Unknown

EUKARYOTIC TRANSLATION INITIATION FACTOR 4F PUTATIVE / EIF-4F PUTATIVE
AT3G11940

Predicted

Synthetic Lethality

FSW = 0.0311

Unknown

ATRPS5A (RIBOSOMAL PROTEIN 5A) STRUCTURAL CONSTITUENT OF RIBOSOME
AT4G35800

Predicted

Co-purification

Co-purification

Affinity Capture-Western

Reconstituted Complex

Affinity Capture-MS

Affinity Capture-MS

Co-purification

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Co-purification

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

Affinity Capture-Western

Co-crystal Structure

Co-purification

co-fractionation

Co-fractionation

far western blotting

Reconstituted Complex

FSW = 0.2032

Unknown

NRPB1 (RNA POLYMERASE II LARGE SUBUNIT) DNA BINDING / DNA-DIRECTED RNA POLYMERASE
AT5G56030

Predicted

Affinity Capture-MS

FSW = 0.0159

Unknown

HSP81-2 (HEAT SHOCK PROTEIN 81-2) ATP BINDING
AT5G52640

Predicted

Affinity Capture-MS

FSW = 0.0333

Unknown

ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING
AT1G16300

Predicted

Co-purification

FSW = 0.0282

Unknown

GAPCP-2 NAD OR NADH BINDING / BINDING / CATALYTIC/ GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE (PHOSPHORYLATING)/ GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE
AT3G43810

Predicted

Reconstituted Complex

interaction prediction

FSW = 0.0061

Unknown

CAM7 (CALMODULIN 7) CALCIUM ION BINDING
AT4G26110

Predicted

Phenotypic Enhancement

FSW = 0.0243

Unknown

NAP11 (NUCLEOSOME ASSEMBLY PROTEIN11) DNA BINDING
AT5G47930

Predicted

two hybrid

FSW = 0.0220

Unknown

40S RIBOSOMAL PROTEIN S27 (RPS27D)
AT5G26340

Predicted

Phenotypic Enhancement

FSW = 0.0576

Unknown

MSS1 CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ HEXOSEHYDROGEN SYMPORTER/ HIGH-AFFINITY HYDROGENGLUCOSE SYMPORTER/ SUGARHYDROGEN SYMPORTER
AT4G19690

Predicted

Synthetic Rescue

FSW = 0.0189

Unknown

IRT1 (IRON-REGULATED TRANSPORTER 1) CADMIUM ION TRANSMEMBRANE TRANSPORTER/ COPPER UPTAKE TRANSMEMBRANE TRANSPORTER/ IRON ION TRANSMEMBRANE TRANSPORTER/ MANGANESE ION TRANSMEMBRANE TRANSPORTER/ ZINC ION TRANSMEMBRANE TRANSPORTER
AT1G69850

Predicted

Phenotypic Enhancement

FSW = 0.0514

Unknown

ATNRT12 (ARABIDOPSIS THALIANA NITRATE TRANSPORTER 12) CALCIUM ION BINDING / TRANSPORTER
AT2G18040

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0565

Unknown

PIN1AT (PEPTIDYLPROLYL CIS/TRANS ISOMERASE NIMA-INTERACTING 1) PEPTIDYL-PROLYL CIS-TRANS ISOMERASE
AT2G44950

Predicted

Phenotypic Enhancement

FSW = 0.1188

Unknown

HUB1 (HISTONE MONO-UBIQUITINATION 1) PROTEIN BINDING / PROTEIN HOMODIMERIZATION/ UBIQUITIN-PROTEIN LIGASE/ ZINC ION BINDING
AT1G75510

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

Co-purification

interaction prediction

FSW = 0.4075

Unknown

TRANSCRIPTION INITIATION FACTOR IIF BETA SUBUNIT (TFIIF-BETA) FAMILY PROTEIN
AT4G33730

Predicted

Phenotypic Enhancement

FSW = 0.0864

Unknown

PATHOGENESIS-RELATED PROTEIN PUTATIVE
AT5G28060

Predicted

Phenotypic Enhancement

FSW = 0.1460

Unknown

40S RIBOSOMAL PROTEIN S24 (RPS24B)
AT5G19910

Predicted

Phenotypic Enhancement

FSW = 0.2347

Unknown

SOH1 FAMILY PROTEIN
AT4G21710

Predicted

interaction prediction

Co-purification

Co-purification

Co-purification

Affinity Capture-Western

two hybrid

Affinity Capture-Western

Affinity Capture-MS

co-fractionation

Co-fractionation

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Co-crystal Structure

Affinity Capture-MS

Affinity Capture-Western

Co-purification

co-fractionation

Co-fractionation

two hybrid

Reconstituted Complex

interologs mapping

interaction prediction

Enriched domain pair

FSW = 0.2022

Unknown

NRPB2 DNA BINDING / DNA-DIRECTED RNA POLYMERASE
AT4G26840

Predicted

Affinity Capture-MS

FSW = 0.0229

Unknown

SUMO1 (SMALL UBIQUITIN-LIKE MODIFIER 1) PROTEIN BINDING / PROTEIN TAG
AT1G61700

Predicted

Reconstituted Complex

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

far western blotting

Reconstituted Complex

Affinity Capture-Western

Co-purification

FSW = 0.1754

Unknown

DNA-DIRECTED RNA POLYMERASE II PUTATIVE (RPB10)
AT2G15400

Predicted

Gene neighbors method

Phylogenetic profile method

FSW = 0.4165

Unknown

NRPE3B DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION
AT5G59180

Predicted

Co-purification

Co-purification

Affinity Capture-Western

Affinity Capture-MS

Co-purification

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Co-purification

Affinity Capture-Western

Reconstituted Complex

interaction prediction

FSW = 0.2940

Unknown

NRPB7 DNA-DIRECTED RNA POLYMERASE/ RNA BINDING
AT2G29540

Predicted

two hybrid

interaction prediction

Enriched domain pair

FSW = 0.0170

Unknown

ATRPC14 (RNA POLYMERASE 14 KDA SUBUNIT) DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION
AT5G41010

Predicted

in vitro

Reconstituted Complex

Affinity Capture-MS

Co-crystal Structure

Affinity Capture-MS

Reconstituted Complex

Affinity Capture-Western

Co-purification

interaction prediction

Enriched domain pair

FSW = 0.1781

Unknown

NRPB12 DNA BINDING / DNA-DIRECTED RNA POLYMERASE
AT5G41910

Predicted

Affinity Capture-MS

FSW = 0.1611

Unknown

RNA POLYMERASE II MEDIATOR COMPLEX PROTEIN-RELATED
AT5G51940

Predicted

in vitro

Affinity Capture-Western

Reconstituted Complex

Affinity Capture-Western

Affinity Capture-MS

Co-purification

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

Affinity Capture-MS

Co-purification

Reconstituted Complex

FSW = 0.2589

Unknown

NRPB6A DNA BINDING / DNA-DIRECTED RNA POLYMERASE
AT1G07340

Predicted

Affinity Capture-Western

FSW = 0.0342

Unknown

ATSTP2 (SUGAR TRANSPORTER 2) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ MONOSACCHARIDE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER
AT1G34150

Predicted

Phenotypic Suppression

FSW = 0.0851

Unknown

TRNA PSEUDOURIDINE SYNTHASE FAMILY PROTEIN
AT1G51710

Predicted

Phenotypic Enhancement

FSW = 0.0906

Unknown

UBP6 (UBIQUITIN-SPECIFIC PROTEASE 6) CALMODULIN BINDING / UBIQUITIN-SPECIFIC PROTEASE
AT1G54250

Predicted

Co-purification

Co-purification

Reconstituted Complex

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Co-purification

Reconstituted Complex

Affinity Capture-Western

interaction prediction

FSW = 0.2147

Unknown

NRPB8A DNA-DIRECTED RNA POLYMERASE
AT1G61670

Predicted

Phenotypic Enhancement

Synthetic Lethality

FSW = 0.1161

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN LOCATED IN ENDOMEMBRANE SYSTEM INTEGRAL TO MEMBRANE CONTAINS INTERPRO DOMAIN/S TRANSMEMBRANE RECEPTOR EUKARYOTA (INTERPROIPR009637) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G109801) HAS 473 BLAST HITS TO 471 PROTEINS IN 125 SPECIES ARCHAE - 0 BACTERIA - 2 METAZOA - 242 FUNGI - 99 PLANTS - 92 VIRUSES - 0 OTHER EUKARYOTES - 38 (SOURCE NCBI BLINK)
AT1G76920

Predicted

Phenotypic Suppression

FSW = 0.0715

Unknown

F-BOX FAMILY PROTEIN (FBX3)
AT1G04730Predicted

Phenotypic Suppression

FSW = 0.0490

Unknown

AAA-TYPE ATPASE FAMILY PROTEIN
AT1G06830

Predicted

Phenotypic Enhancement

FSW = 0.0259

Unknown

GLUTAREDOXIN FAMILY PROTEIN
AT1G15780

Predicted

Phenotypic Enhancement

two hybrid

FSW = 0.1440

Unknown

UNKNOWN PROTEIN
AT1G18830Predicted

Phenotypic Enhancement

FSW = 0.0754

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT1G32130

Predicted

Affinity Capture-MS

FSW = 0.1510

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 25 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S TFIIS N-TERMINAL (INTERPROIPR017923) IWS1 C-TERMINAL (INTERPROIPR008654) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS IWS1 C-TERMINUS FAMILY PROTEIN (TAIRAT4G190001) HAS 907 BLAST HITS TO 871 PROTEINS IN 182 SPECIES ARCHAE - 4 BACTERIA - 14 METAZOA - 417 FUNGI - 195 PLANTS - 42 VIRUSES - 8 OTHER EUKARYOTES - 227 (SOURCE NCBI BLINK)
AT1G49540

Predicted

Affinity Capture-Western

Co-purification

FSW = 0.1684

Unknown

NUCLEOTIDE BINDING
AT1G52740

Predicted

Phenotypic Enhancement

FSW = 0.1680

Unknown

HTA9 (HISTONE H2A PROTEIN 9) DNA BINDING
AT1G55810

Predicted

two hybrid

FSW = 0.0086

Unknown

URACIL PHOSPHORIBOSYLTRANSFERASE PUTATIVE / UMP PYROPHOSPHORYLASE PUTATIVE / UPRTASE PUTATIVE
AT1G59890

Predicted

Phenotypic Suppression

FSW = 0.1108

Unknown

SNL5 (SIN3-LIKE 5)
AT2G19160

Predicted

Affinity Capture-MS

Affinity Capture-Western

FSW = 0.0282

Unknown

UNKNOWN PROTEIN
AT2G29190

Predicted

Phenotypic Enhancement

FSW = 0.1112

Unknown

APUM2 (ARABIDOPSIS PUMILIO 2) RNA BINDING / BINDING
AT2G44150

Predicted

Affinity Capture-Western

Affinity Capture-MS

Phenotypic Enhancement

FSW = 0.2068

Unknown

ASHH3 (HISTONE-LYSINE N-METHYLTRANSFERASE ASHH3) HISTONE-LYSINE N-METHYLTRANSFERASE
AT2G47090

Predicted

Synthetic Lethality

FSW = 0.0193

Unknown

NUCLEIC ACID BINDING / PROTEIN BINDING / ZINC ION BINDING
AT3G04710

Predicted

Phenotypic Enhancement

FSW = 0.0448

Unknown

ANKYRIN REPEAT FAMILY PROTEIN
AT3G05960

Predicted

Phenotypic Enhancement

FSW = 0.0360

Unknown

STP6 (SUGAR TRANSPORTER 6) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ MONOSACCHARIDE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER
AT3G22320

Predicted

Co-purification

Co-purification

Affinity Capture-Western

Reconstituted Complex

Reconstituted Complex

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Co-purification

Reconstituted Complex

Affinity Capture-Western

interaction prediction

FSW = 0.2017

Unknown

NRPB5 DNA BINDING / DNA-DIRECTED RNA POLYMERASE
AT5G10260

Predicted

Phenotypic Enhancement

FSW = 0.0932

Unknown

ATRABH1E (ARABIDOPSIS RAB GTPASE HOMOLOG H1E) GTP BINDING
AT5G10790

Predicted

Phenotypic Suppression

FSW = 0.1051

Unknown

UBP22 (UBIQUITIN-SPECIFIC PROTEASE 22) UBIQUITIN THIOLESTERASE/ UBIQUITIN-SPECIFIC PROTEASE/ ZINC ION BINDING
AT5G27970Predicted

Phenotypic Enhancement

FSW = 0.0632

Unknown

BINDING
AT5G46030

Predicted

Phenotypic Enhancement

FSW = 0.0979

Unknown

UNKNOWN PROTEIN
AT5G50320

Predicted

Phenotypic Enhancement

FSW = 0.1231

Unknown

ELO3 (ELONGATA 3) HISTONE ACETYLTRANSFERASE
AT5G57190

Predicted

Phenotypic Enhancement

FSW = 0.1689

Unknown

PSD2 (PHOSPHATIDYLSERINE DECARBOXYLASE 2) PHOSPHATIDYLSERINE DECARBOXYLASE
AT5G63670

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2599

Unknown

SPT42 (SPT4 HOMOLOG 2) POSITIVE TRANSCRIPTION ELONGATION FACTOR/ ZINC ION BINDING
AT3G21060

Predicted

Phenotypic Enhancement

FSW = 0.1386

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT3G54380

Predicted

Phenotypic Enhancement

FSW = 0.0989

Unknown

SAC3/GANP FAMILY PROTEIN
AT4G04210

Predicted

Synthetic Lethality

FSW = 0.0618

Unknown

PUX4 PROTEIN BINDING
AT4G33240

Predicted

Phenotypic Enhancement

FSW = 0.0786

Unknown

1-PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE/ ATP BINDING / PHOSPHATIDYLINOSITOL PHOSPHATE KINASE/ PROTEIN BINDING / ZINC ION BINDING
AT5G03220

Predicted

Affinity Capture-Western

interaction prediction

FSW = 0.0895

Unknown

TRANSCRIPTIONAL CO-ACTIVATOR-RELATED
AT5G41700

Predicted

Phenotypic Suppression

FSW = 0.0405

Unknown

UBC8 (UBIQUITIN CONJUGATING ENZYME 8) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT5G52200

Predicted

Synthetic Lethality

FSW = 0.0913

Unknown

UNKNOWN PROTEIN
AT5G66100

Predicted

Phenotypic Enhancement

FSW = 0.0836

Unknown

LA DOMAIN-CONTAINING PROTEIN
AT5G67320

Predicted

Phenotypic Enhancement

FSW = 0.0633

Unknown

HOS15 (HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 15)
AT5G58003

Predicted

Affinity Capture-MS

Co-purification

FSW = 0.2990

Unknown

CPL4 (C-TERMINAL DOMAIN PHOSPHATASE-LIKE 4) PHOSPHOPROTEIN PHOSPHATASE
AT5G02820

Predicted

two hybrid

FSW = 0.0200

Unknown

RHL2 (ROOT HAIRLESS 2) ATP BINDING / DNA BINDING / DNA TOPOISOMERASE (ATP-HYDROLYZING)/ IDENTICAL PROTEIN BINDING / PROTEIN BINDING
AT5G13680

Predicted

interaction prediction

FSW = 0.1589

Unknown

ABO1 (ABA-OVERLY SENSITIVE 1) TRANSCRIPTION ELONGATION REGULATOR
AT3G05670

Predicted

interaction prediction

FSW = 0.1151

Unknown

PHD FINGER FAMILY PROTEIN

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Fasta sequences:

Proteins

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454