Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G16710 - ( hesB-like domain-containing protein )

22 Proteins interacs with AT2G16710
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT1G09960

Predicted

two hybrid

FSW = 0.1731

Unknown

SUT4 (SUCROSE TRANSPORTER 4) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ SUCROSE TRANSMEMBRANE TRANSPORTER/ SUCROSEHYDROGEN SYMPORTER/ SUGARHYDROGEN SYMPORTER
AT2G40510

Predicted

two hybrid

FSW = 0.0334

Unknown

40S RIBOSOMAL PROTEIN S26 (RPS26A)
AT1G15390

Predicted

two hybrid

two hybrid

FSW = 0.1731

Unknown

PDF1A (PEPTIDE DEFORMYLASE 1A) PEPTIDE DEFORMYLASE
ATCG00830Predicted

pull down

FSW = 0.0057

Unknown

ENCODES A CHLOROPLAST RIBOSOMAL PROTEIN L2 A CONSTITUENT OF THE LARGE SUBUNIT OF THE RIBOSOMAL COMPLEX
AT3G47370

Predicted

two hybrid

FSW = 0.0167

Unknown

40S RIBOSOMAL PROTEIN S20 (RPS20B)
AT5G12350

Predicted

Affinity Capture-MS

FSW = 0.0409

Unknown

RAN GTPASE BINDING / CHROMATIN BINDING / ZINC ION BINDING
AT5G25754Predicted

two hybrid

two hybrid

FSW = 0.0420

Unknown

UNKNOWN PROTEIN
AT5G37720

Predicted

Affinity Capture-MS

FSW = 0.0046

Unknown

RNA AND EXPORT FACTOR-BINDING PROTEIN PUTATIVE
AT5G20160

Predicted

Synthetic Lethality

FSW = 0.0577

Unknown

RIBOSOMAL PROTEIN L7AE/L30E/S12E/GADD45 FAMILY PROTEIN
AT3G20970

Predicted

Affinity Capture-MS

FSW = 0.0198

Unknown

NFU4 STRUCTURAL MOLECULE
AT1G51390

Predicted

Affinity Capture-MS

FSW = 0.1280

Unknown

NFU5 ATP BINDING / STRUCTURAL MOLECULE
AT4G05450

Predicted

enzymatic study

FSW = 0.0381

Unknown

ADRENODOXIN-LIKE FERREDOXIN 2
AT3G25980

Predicted

Synthetic Lethality

FSW = 0.0044

Unknown

MITOTIC SPINDLE CHECKPOINT PROTEIN PUTATIVE (MAD2)
AT3G56340

Predicted

interaction prediction

two hybrid

FSW = 0.0178

Unknown

40S RIBOSOMAL PROTEIN S26 (RPS26C)
AT5G07470

Predicted

pull down

FSW = 0.0345

Unknown

PMSR3 (PEPTIDEMETHIONINE SULFOXIDE REDUCTASE 3) OXIDOREDUCTASE ACTING ON SULFUR GROUP OF DONORS DISULFIDE AS ACCEPTOR / PEPTIDE-METHIONINE-(S)-S-OXIDE REDUCTASE
AT3G01090

Predicted

biochemical

FSW = 0.0055

Unknown

AKIN10 (ARABIDOPSIS SNF1 KINASE HOMOLOG 10) PROTEIN BINDING / PROTEIN KINASE
AT4G12130

Predicted

Affinity Capture-Western

FSW = 0.0324

Unknown

AMINOMETHYLTRANSFERASE
AT5G66640

Predicted

biochemical

FSW = 0.0068

Unknown

DAR3 (DA1-RELATED PROTEIN 3)
AT5G02530

Predicted

Affinity Capture-MS

FSW = 0.0056

Unknown

RNA AND EXPORT FACTOR-BINDING PROTEIN PUTATIVE
AT2G02860

Predicted

two hybrid

FSW = 0.1731

Unknown

SUT2 (SUCROSE TRANSPORTER 2) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ SUCROSE TRANSMEMBRANE TRANSPORTER/ SUCROSEHYDROGEN SYMPORTER/ SUGARHYDROGEN SYMPORTER
AT3G45030Predicted

two hybrid

FSW = 0.0814

Unknown

40S RIBOSOMAL PROTEIN S20 (RPS20A)
AT2G36260

Predicted

Phylogenetic profile method

FSW = 0.0847

Unknown

IRON-SULFUR CLUSTER ASSEMBLY COMPLEX PROTEIN PUTATIVE

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454