Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G17130 - ( IDH2 (ISOCITRATE DEHYDROGENASE SUBUNIT 2) isocitrate dehydrogenase (NAD+)/ oxidoreductase acting on the CH-OH group of donors NAD or NADP as acceptor )

19 Proteins interacs with AT2G17130
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT5G03290

Predicted

in vitro

in vivo

Phylogenetic profile method

Co-expression

FSW = 0.2377

Class C:

mitochondrion

ISOCITRATE DEHYDROGENASE PUTATIVE / NAD+ ISOCITRATE DEHYDROGENASE PUTATIVE
AT3G09810

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.2429

Class C:

mitochondrion

ISOCITRATE DEHYDROGENASE PUTATIVE / NAD+ ISOCITRATE DEHYDROGENASE PUTATIVE
AT4G35650

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.6207

Class C:

mitochondrion

ISOCITRATE DEHYDROGENASE PUTATIVE / NAD+ ISOCITRATE DEHYDROGENASE PUTATIVE
AT4G35260

Predicted

Affinity Capture-MS

in vivo

Gene fusion method

Phylogenetic profile method

Co-expression

FSW = 0.4469

Class C:

mitochondrion

IDH1 (ISOCITRATE DEHYDROGENASE 1) ISOCITRATE DEHYDROGENASE (NAD+)/ OXIDOREDUCTASE ACTING ON THE CH-OH GROUP OF DONORS NAD OR NADP AS ACCEPTOR
AT1G65240

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0460

Unknown

ASPARTYL PROTEASE FAMILY PROTEIN
AT2G06850

Predicted

two hybrid

FSW = 0.0428

Unknown

EXGT-A1 (ENDOXYLOGLUCAN TRANSFERASE) HYDROLASE ACTING ON GLYCOSYL BONDS / XYLOGLUCANXYLOGLUCOSYL TRANSFERASE
AT1G31180

Predicted

Phylogenetic profile method

FSW = 0.4881

Unknown

3-ISOPROPYLMALATE DEHYDROGENASE CHLOROPLAST PUTATIVE
AT5G14200

Predicted

Phylogenetic profile method

FSW = 0.5320

Unknown

3-ISOPROPYLMALATE DEHYDROGENASE CHLOROPLAST PUTATIVE
AT1G80560

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.5046

Unknown

3-ISOPROPYLMALATE DEHYDROGENASE CHLOROPLAST PUTATIVE
AT3G23600

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0251

Unknown

DIENELACTONE HYDROLASE FAMILY PROTEIN
AT4G04720

Predicted

Affinity Capture-MS

FSW = 0.0296

Unknown

CPK21 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT5G54840

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0637

Unknown

SGP1 GTP BINDING
AT2G19980

Predicted

Affinity Capture-MS

FSW = 0.0207

Unknown

ALLERGEN V5/TPX-1-RELATED FAMILY PROTEIN
AT3G45280

Predicted

Reconstituted Complex

FSW = 0.2949

Unknown

SYP72 (SYNTAXIN OF PLANTS 72) PROTEIN TRANSPORTER
AT1G34580

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0364

Unknown

MONOSACCHARIDE TRANSPORTER PUTATIVE
AT3G15460

Predicted

Affinity Capture-MS

Reconstituted Complex

FSW = 0.0729

Unknown

BRIX DOMAIN-CONTAINING PROTEIN
AT5G16290

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

two hybrid

Affinity Capture-Western

FSW = 0.2215

Unknown

ACETOLACTATE SYNTHASE SMALL SUBUNIT PUTATIVE
AT5G66360

Predicted

Reconstituted Complex

FSW = 0.2612

Unknown

RIBOSOMAL RNA ADENINE DIMETHYLASE FAMILY PROTEIN
AT1G32480

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.4881

Unknown

OXIDOREDUCTASE/ OXIDOREDUCTASE ACTING ON THE CH-OH GROUP OF DONORS NAD OR NADP AS ACCEPTOR

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Fasta sequences:

Proteins

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454