Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G17130 - ( IDH2 (ISOCITRATE DEHYDROGENASE SUBUNIT 2) isocitrate dehydrogenase (NAD+)/ oxidoreductase acting on the CH-OH group of donors NAD or NADP as acceptor )
19 Proteins interacs with AT2G17130Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G03290 | Predictedin vitroin vivoPhylogenetic profile methodCo-expression | FSW = 0.2377
| Class C:mitochondrion | ISOCITRATE DEHYDROGENASE PUTATIVE / NAD+ ISOCITRATE DEHYDROGENASE PUTATIVE |
AT3G09810 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.2429
| Class C:mitochondrion | ISOCITRATE DEHYDROGENASE PUTATIVE / NAD+ ISOCITRATE DEHYDROGENASE PUTATIVE |
AT4G35650 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.6207
| Class C:mitochondrion | ISOCITRATE DEHYDROGENASE PUTATIVE / NAD+ ISOCITRATE DEHYDROGENASE PUTATIVE |
AT4G35260 | PredictedAffinity Capture-MSin vivoGene fusion methodPhylogenetic profile methodCo-expression | FSW = 0.4469
| Class C:mitochondrion | IDH1 (ISOCITRATE DEHYDROGENASE 1) ISOCITRATE DEHYDROGENASE (NAD+)/ OXIDOREDUCTASE ACTING ON THE CH-OH GROUP OF DONORS NAD OR NADP AS ACCEPTOR |
AT1G65240 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0460
| Unknown | ASPARTYL PROTEASE FAMILY PROTEIN |
AT2G06850 | Predictedtwo hybrid | FSW = 0.0428
| Unknown | EXGT-A1 (ENDOXYLOGLUCAN TRANSFERASE) HYDROLASE ACTING ON GLYCOSYL BONDS / XYLOGLUCANXYLOGLUCOSYL TRANSFERASE |
AT1G31180 | PredictedPhylogenetic profile method | FSW = 0.4881
| Unknown | 3-ISOPROPYLMALATE DEHYDROGENASE CHLOROPLAST PUTATIVE |
AT5G14200 | PredictedPhylogenetic profile method | FSW = 0.5320
| Unknown | 3-ISOPROPYLMALATE DEHYDROGENASE CHLOROPLAST PUTATIVE |
AT1G80560 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.5046
| Unknown | 3-ISOPROPYLMALATE DEHYDROGENASE CHLOROPLAST PUTATIVE |
AT3G23600 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0251
| Unknown | DIENELACTONE HYDROLASE FAMILY PROTEIN |
AT4G04720 | PredictedAffinity Capture-MS | FSW = 0.0296
| Unknown | CPK21 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT5G54840 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.0637
| Unknown | SGP1 GTP BINDING |
AT2G19980 | PredictedAffinity Capture-MS | FSW = 0.0207
| Unknown | ALLERGEN V5/TPX-1-RELATED FAMILY PROTEIN |
AT3G45280 | PredictedReconstituted Complex | FSW = 0.2949
| Unknown | SYP72 (SYNTAXIN OF PLANTS 72) PROTEIN TRANSPORTER |
AT1G34580 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.0364
| Unknown | MONOSACCHARIDE TRANSPORTER PUTATIVE |
AT3G15460 | PredictedAffinity Capture-MSReconstituted Complex | FSW = 0.0729
| Unknown | BRIX DOMAIN-CONTAINING PROTEIN |
AT5G16290 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Westerntwo hybridAffinity Capture-Western | FSW = 0.2215
| Unknown | ACETOLACTATE SYNTHASE SMALL SUBUNIT PUTATIVE |
AT5G66360 | PredictedReconstituted Complex | FSW = 0.2612
| Unknown | RIBOSOMAL RNA ADENINE DIMETHYLASE FAMILY PROTEIN |
AT1G32480 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.4881
| Unknown | OXIDOREDUCTASE/ OXIDOREDUCTASE ACTING ON THE CH-OH GROUP OF DONORS NAD OR NADP AS ACCEPTOR |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454