Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G17190 - ( ubiquitin family protein )
35 Proteins interacs with AT2G17190Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G60640 | Predictedtwo hybridin vivoin vitroAffinity Capture-MS | FSW = 0.0111
| Unknown | ATPDIL1-4 (PDI-LIKE 1-4) PROTEIN DISULFIDE ISOMERASE |
AT3G22110 | PredictedPhenotypic Suppression | FSW = 0.0180
| Unknown | PAC1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT2G19860 | Predictedtwo hybrid | FSW = 0.0030
| Unknown | HXK2 (HEXOKINASE 2) ATP BINDING / FRUCTOKINASE/ GLUCOKINASE/ HEXOKINASE |
AT2G21170 | Predictedtwo hybridtwo hybrid | FSW = 0.0191
| Unknown | TIM (TRIOSEPHOSPHATE ISOMERASE) CATALYTIC/ TRIOSE-PHOSPHATE ISOMERASE |
AT3G55360 | Predictedtwo hybridtwo hybrid | FSW = 0.0083
| Unknown | CER10 3-OXO-5-ALPHA-STEROID 4-DEHYDROGENASE/ FATTY ACID ELONGASE/ TRANS-2-ENOYL-COA REDUCTASE (NADPH) |
AT1G04810 | Predictedinteraction prediction | FSW = 0.1850
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT PUTATIVE |
AT2G20580 | PredictedSynthetic RescueAffinity Capture-Westerninteraction prediction | FSW = 0.0992
| Unknown | RPN1A (26S PROTEASOME REGULATORY SUBUNIT S2 1A) BINDING / ENZYME REGULATOR |
AT1G53750 | PredictedAffinity Capture-WesternAffinity Capture-Western | FSW = 0.1165
| Unknown | RPT1A (REGULATORY PARTICLE TRIPLE-A 1A) ATPASE |
AT1G23410 | Predictedtwo hybrid | FSW = 0.0941
| Unknown | UBIQUITIN EXTENSION PROTEIN PUTATIVE / 40S RIBOSOMAL PROTEIN S27A (RPS27AA) |
AT1G09100 | PredictedAffinity Capture-Western | FSW = 0.2102
| Unknown | RPT5B (26S PROTEASOME AAA-ATPASE SUBUNIT RPT5B) ATPASE/ CALMODULIN BINDING |
AT3G05530 | PredictedAffinity Capture-Westerninteraction prediction | FSW = 0.1526
| Unknown | RPT5A (REGULATORY PARTICLE TRIPLE-A ATPASE 5A) ATPASE/ CALMODULIN BINDING |
AT2G36170 | Predictedtwo hybrid | FSW = 0.0244
| Unknown | UBIQUITIN EXTENSION PROTEIN 2 (UBQ2) / 60S RIBOSOMAL PROTEIN L40 (RPL40A) |
AT1G13060 | PredictedSynthetic Rescue | FSW = 0.0452
| Unknown | PBE1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT1G16190 | Predictedinteraction predictiontwo hybridsynthetic growth defectsynthetic growth defectPhenotypic Enhancementtwo hybridPhenotypic Enhancementsynthetic growth defect | FSW = 0.2263
| Unknown | DNA REPAIR PROTEIN RAD23 PUTATIVE |
AT2G29900 | PredictedAffinity Capture-MSin vitroin vivotwo hybrid | FSW = 0.0105
| Unknown | PRESENILIN FAMILY PROTEIN |
AT5G58290 | PredictedAffinity Capture-Western | FSW = 0.1586
| Unknown | RPT3 (REGULATORY PARTICLE TRIPLE-A ATPASE 3) ATPASE |
AT5G38470 | Predictedsynthetic growth defectPhenotypic Enhancementsynthetic growth defectPhenotypic Enhancementtwo hybridPhenotypic Enhancementsynthetic growth defect | FSW = 0.1479
| Unknown | DNA REPAIR PROTEIN RAD23 PUTATIVE |
AT3G08690 | Predictedtwo hybrid | FSW = 0.0264
| Unknown | UBC11 (UBIQUITIN-CONJUGATING ENZYME 11) UBIQUITIN-PROTEIN LIGASE |
AT1G44910 | PredictedAffinity Capture-MS | FSW = 0.0120
| Unknown | PROTEIN BINDING |
AT1G50030 | Predictedin vitroin vivotwo hybrid | FSW = 0.0083
| Unknown | TOR (TARGET OF RAPAMYCIN) 1-PHOSPHATIDYLINOSITOL-3-KINASE/ PROTEIN BINDING |
AT1G71800 | Predictedtwo hybrid | FSW = 0.0421
| Unknown | CLEAVAGE STIMULATION FACTOR PUTATIVE |
AT5G16360 | Predictedtwo hybrid | FSW = 0.0234
| Unknown | NC DOMAIN-CONTAINING PROTEIN |
AT4G05320 | Predictedtwo hybridReconstituted ComplexCo-crystal Structureinteraction prediction | FSW = 0.0639
| Unknown | UBQ10 (POLYUBIQUITIN 10) PROTEIN BINDING |
AT4G38630 | PredictedPhenotypic EnhancementPhenotypic EnhancementAffinity Capture-WesternReconstituted ComplexSynthetic Lethality | FSW = 0.0991
| Unknown | RPN10 (REGULATORY PARTICLE NON-ATPASE 10) PEPTIDE RECEPTOR |
AT5G15400 | PredictedAffinity Capture-WesternAffinity Capture-MSCo-purificationinteraction prediction | FSW = 0.1818
| Unknown | U-BOX DOMAIN-CONTAINING PROTEIN |
AT5G16870 | PredictedAffinity Capture-Westerntwo hybrid | FSW = 0.1016
| Unknown | AMINOACYL-TRNA HYDROLASE |
AT5G27970 | PredictedPhenotypic Enhancement | FSW = 0.0140
| Unknown | BINDING |
AT2G47110 | Predictedtwo hybrid | FSW = 0.0717
| Unknown | UBQ6 PROTEIN BINDING |
AT3G52590 | Predictedtwo hybrid | FSW = 0.0469
| Unknown | UBQ1 (UBIQUITIN EXTENSION PROTEIN 1) PROTEIN BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME |
AT4G04210 | PredictedPhenotypic Enhancement | FSW = 0.0123
| Unknown | PUX4 PROTEIN BINDING |
AT4G19006 | PredictedAffinity Capture-Westerninteraction prediction | FSW = 0.1818
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT PUTATIVE (RPN9) |
AT5G10260 | PredictedPhenotypic Enhancement | FSW = 0.0076
| Unknown | ATRABH1E (ARABIDOPSIS RAB GTPASE HOMOLOG H1E) GTP BINDING |
AT1G64750 | PredictedPhenotypic Suppression | FSW = 0.1609
| Unknown | ATDSS1(I) (ARABIDOPSIS THALIANA DELETION OF SUV3 SUPRESSOR 1(I)) |
AT5G56150 | Predictedtwo hybridEnriched domain pair | FSW = 0.0196
| Unknown | UBC30 (UBIQUITIN-CONJUGATING ENZYME 30) UBIQUITIN-PROTEIN LIGASE |
AT4G29020 | Predictedtwo hybrid | FSW = 0.0201
| Unknown | GLYCINE-RICH PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454