Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G17200 - ( ubiquitin family protein )
17 Proteins interacs with AT2G17200Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT4G29130 | Predictedtwo hybrid | FSW = 0.0267
| Unknown | HXK1 (HEXOKINASE 1) ATP BINDING / FRUCTOKINASE/ GLUCOKINASE/ HEXOKINASE |
AT3G55440 | Predictedtwo hybrid | FSW = 0.0381
| Unknown | TPI (TRIOSEPHOSPHATE ISOMERASE) TRIOSE-PHOSPHATE ISOMERASE |
AT2G01720 | Predictedin vivoin vitro | FSW = 0.0571
| Unknown | RIBOPHORIN I FAMILY PROTEIN |
AT5G60640 | PredictedAffinity Capture-MSin vitroin vivotwo hybrid | FSW = 0.0440
| Unknown | ATPDIL1-4 (PDI-LIKE 1-4) PROTEIN DISULFIDE ISOMERASE |
AT3G55360 | Predictedtwo hybrid | FSW = 0.0330
| Unknown | CER10 3-OXO-5-ALPHA-STEROID 4-DEHYDROGENASE/ FATTY ACID ELONGASE/ TRANS-2-ENOYL-COA REDUCTASE (NADPH) |
AT2G36170 | Predictedtwo hybrid | FSW = 0.0175
| Unknown | UBIQUITIN EXTENSION PROTEIN 2 (UBQ2) / 60S RIBOSOMAL PROTEIN L40 (RPL40A) |
AT4G02570 | Predictedtwo hybrid | FSW = 0.0180
| Unknown | ATCUL1 (ARABIDOPSIS THALIANA CULLIN 1) PROTEIN BINDING |
AT2G29900 | Predictedtwo hybridin vivoin vitroAffinity Capture-MS | FSW = 0.0418
| Unknown | PRESENILIN FAMILY PROTEIN |
AT1G54140 | Predictedtwo hybrid | FSW = 0.0067
| Unknown | TAFII21 (TATA BINDING PROTEIN ASSOCIATED FACTOR 21KDA SUBUNIT) DNA BINDING / TRANSCRIPTION INITIATION FACTOR |
AT1G71800 | Predictedtwo hybridtwo hybrid | FSW = 0.0800
| Unknown | CLEAVAGE STIMULATION FACTOR PUTATIVE |
AT3G52590 | Predictedtwo hybrid | FSW = 0.0343
| Unknown | UBQ1 (UBIQUITIN EXTENSION PROTEIN 1) PROTEIN BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME |
AT4G15840 | Predictedtwo hybrid | FSW = 0.0426
| Unknown | PROTEIN BINDING |
AT5G46540 | Predictedtwo hybrid | FSW = 0.0320
| Unknown | PGP7 (P-GLYCOPROTEIN 7) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES |
AT5G56150 | Predictedtwo hybrid | FSW = 0.0174
| Unknown | UBC30 (UBIQUITIN-CONJUGATING ENZYME 30) UBIQUITIN-PROTEIN LIGASE |
AT1G50030 | Predictedin vitroin vivotwo hybrid | FSW = 0.0157
| Unknown | TOR (TARGET OF RAPAMYCIN) 1-PHOSPHATIDYLINOSITOL-3-KINASE/ PROTEIN BINDING |
AT2G26210 | Predictedtwo hybrid | FSW = 0.0659
| Unknown | ANKYRIN REPEAT FAMILY PROTEIN |
AT3G19670 | PredictedAffinity Capture-MS | FSW = 0.0186
| Unknown | PROTEIN BINDING |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454