Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G17200 - ( ubiquitin family protein )

17 Proteins interacs with AT2G17200
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT4G29130

Predicted

two hybrid

FSW = 0.0267

Unknown

HXK1 (HEXOKINASE 1) ATP BINDING / FRUCTOKINASE/ GLUCOKINASE/ HEXOKINASE
AT3G55440

Predicted

two hybrid

FSW = 0.0381

Unknown

TPI (TRIOSEPHOSPHATE ISOMERASE) TRIOSE-PHOSPHATE ISOMERASE
AT2G01720

Predicted

in vivo

in vitro

FSW = 0.0571

Unknown

RIBOPHORIN I FAMILY PROTEIN
AT5G60640

Predicted

Affinity Capture-MS

in vitro

in vivo

two hybrid

FSW = 0.0440

Unknown

ATPDIL1-4 (PDI-LIKE 1-4) PROTEIN DISULFIDE ISOMERASE
AT3G55360

Predicted

two hybrid

FSW = 0.0330

Unknown

CER10 3-OXO-5-ALPHA-STEROID 4-DEHYDROGENASE/ FATTY ACID ELONGASE/ TRANS-2-ENOYL-COA REDUCTASE (NADPH)
AT2G36170Predicted

two hybrid

FSW = 0.0175

Unknown

UBIQUITIN EXTENSION PROTEIN 2 (UBQ2) / 60S RIBOSOMAL PROTEIN L40 (RPL40A)
AT4G02570

Predicted

two hybrid

FSW = 0.0180

Unknown

ATCUL1 (ARABIDOPSIS THALIANA CULLIN 1) PROTEIN BINDING
AT2G29900

Predicted

two hybrid

in vivo

in vitro

Affinity Capture-MS

FSW = 0.0418

Unknown

PRESENILIN FAMILY PROTEIN
AT1G54140

Predicted

two hybrid

FSW = 0.0067

Unknown

TAFII21 (TATA BINDING PROTEIN ASSOCIATED FACTOR 21KDA SUBUNIT) DNA BINDING / TRANSCRIPTION INITIATION FACTOR
AT1G71800

Predicted

two hybrid

two hybrid

FSW = 0.0800

Unknown

CLEAVAGE STIMULATION FACTOR PUTATIVE
AT3G52590Predicted

two hybrid

FSW = 0.0343

Unknown

UBQ1 (UBIQUITIN EXTENSION PROTEIN 1) PROTEIN BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME
AT4G15840

Predicted

two hybrid

FSW = 0.0426

Unknown

PROTEIN BINDING
AT5G46540

Predicted

two hybrid

FSW = 0.0320

Unknown

PGP7 (P-GLYCOPROTEIN 7) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES
AT5G56150

Predicted

two hybrid

FSW = 0.0174

Unknown

UBC30 (UBIQUITIN-CONJUGATING ENZYME 30) UBIQUITIN-PROTEIN LIGASE
AT1G50030

Predicted

in vitro

in vivo

two hybrid

FSW = 0.0157

Unknown

TOR (TARGET OF RAPAMYCIN) 1-PHOSPHATIDYLINOSITOL-3-KINASE/ PROTEIN BINDING
AT2G26210

Predicted

two hybrid

FSW = 0.0659

Unknown

ANKYRIN REPEAT FAMILY PROTEIN
AT3G19670Predicted

Affinity Capture-MS

FSW = 0.0186

Unknown

PROTEIN BINDING

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454