Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G17530 - ( protein kinase family protein )

15 Proteins interacs with AT2G17530
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT1G80070

Predicted

Synthetic Lethality

FSW = 0.0340

Unknown

SUS2 (ABNORMAL SUSPENSOR 2)
AT2G32920

Predicted

Gene fusion method

FSW = 0.1457

Unknown

ATPDIL2-3 (PDI-LIKE 2-3) PROTEIN DISULFIDE ISOMERASE
AT1G02510

Predicted

Synthetic Rescue

FSW = 0.2368

Unknown

TPK4 OUTWARD RECTIFIER POTASSIUM CHANNEL
AT2G22290

Predicted

Synthetic Lethality

FSW = 0.0075

Unknown

ATRABH1D (ARABIDOPSIS RAB GTPASE HOMOLOG H1D) GTP BINDING
AT1G57550

Predicted

Synthetic Rescue

FSW = 0.0512

Unknown

HYDROPHOBIC PROTEIN PUTATIVE / LOW TEMPERATURE AND SALT RESPONSIVE PROTEIN PUTATIVE
AT5G63860

Predicted

Gene fusion method

FSW = 0.0379

Unknown

UVR8 (UVB-RESISTANCE 8) CHROMATIN BINDING / GUANYL-NUCLEOTIDE EXCHANGE FACTOR
AT5G58290

Predicted

two hybrid

FSW = 0.0246

Unknown

RPT3 (REGULATORY PARTICLE TRIPLE-A ATPASE 3) ATPASE
AT5G40490

Predicted

biochemical

biochemical

biochemical

biochemical

FSW = 0.0344

Unknown

RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN
AT4G10310

Predicted

interologs mapping

Phenotypic Enhancement

Synthetic Rescue

FSW = 0.1984

Unknown

HKT1 (HIGH-AFFINITY K+ TRANSPORTER 1) SODIUM ION TRANSMEMBRANE TRANSPORTER
AT5G62600

Predicted

Synthetic Lethality

FSW = 0.1032

Unknown

TRANSPORTIN-SR-RELATED
AT1G10580

Predicted

Synthetic Lethality

FSW = 0.0640

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT4G35500

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.2976

Unknown

PROTEIN KINASE FAMILY PROTEIN
AT5G22840

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.2137

Unknown

PROTEIN KINASE FAMILY PROTEIN
AT3G53030

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.0476

Unknown

SRPK4 (SER/ARG-RICH PROTEIN KINASE 4) KINASE/ PROTEIN KINASE
AT3G44850

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.1984

Unknown

PROTEIN KINASE-RELATED

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Fasta sequences:

Proteins

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454