Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G17630 - ( phosphoserine aminotransferase putative )

14 Proteins interacs with AT2G17630
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT2G33210

Predicted

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FSW = 0.0109

Class C:

plastid

HSP60-2 (HEAT SHOCK PROTEIN 60-2) ATP BINDING
AT4G35630

Predicted

Phylogenetic profile method

FSW = 0.0856

Class C:

plastid

PSAT O-PHOSPHO-L-SERINE2-OXOGLUTARATE AMINOTRANSFERASE
ATCG00830Predicted

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FSW = 0.0175

Class C:

plastid

ENCODES A CHLOROPLAST RIBOSOMAL PROTEIN L2 A CONSTITUENT OF THE LARGE SUBUNIT OF THE RIBOSOMAL COMPLEX
AT4G37910

Predicted

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FSW = 0.0257

Unknown

MTHSC70-1 (MITOCHONDRIAL HEAT SHOCK PROTEIN 70-1) ATP BINDING
AT3G04520

Predicted

interologs mapping

FSW = 0.1113

Unknown

THA2 (THREONINE ALDOLASE 2) THREONINE ALDOLASE
AT2G30110

Predicted

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

FSW = 0.0241

Unknown

ATUBA1 UBIQUITIN ACTIVATING ENZYME/ UBIQUITIN-PROTEIN LIGASE
AT5G19180

Predicted

Phenotypic Enhancement

FSW = 0.0336

Unknown

ECR1 (E1 C-TERMINAL RELATED 1) NEDD8 ACTIVATING ENZYME/ PROTEIN HETERODIMERIZATION/ SMALL PROTEIN ACTIVATING ENZYME
AT2G22310

Predicted

Phenotypic Enhancement

FSW = 0.0325

Unknown

ATUBP4 (ARABIDOPSIS THALIANA UBIQUITIN-SPECIFIC PROTEASE 4) UBIQUITIN-SPECIFIC PROTEASE
AT4G04955

Predicted

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FSW = 0.0471

Unknown

ATALN (ARABIDOPSIS ALLANTOINASE) ALLANTOINASE/ HYDROLASE
AT3G18860

Predicted

Phenotypic Suppression

FSW = 0.0250

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT5G27970Predicted

Phenotypic Enhancement

FSW = 0.0177

Unknown

BINDING
AT5G45600

Predicted

Phenotypic Enhancement

FSW = 0.0208

Unknown

GAS41 PROTEIN BINDING
AT1G08630

Predicted

interologs mapping

FSW = 0.0909

Unknown

THA1 (THREONINE ALDOLASE 1) ALDEHYDE-LYASE/ THREONINE ALDOLASE
AT3G03110

Predicted

two hybrid

interaction prediction

FSW = 0.0122

Unknown

XPO1B BINDING / PROTEIN TRANSPORTER

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Fasta sequences:

Proteins

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454