Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G17630 - ( phosphoserine aminotransferase putative )
14 Proteins interacs with AT2G17630Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT2G33210 | Predictedpull down | FSW = 0.0109
| Class C:plastid | HSP60-2 (HEAT SHOCK PROTEIN 60-2) ATP BINDING |
AT4G35630 | PredictedPhylogenetic profile method | FSW = 0.0856
| Class C:plastid | PSAT O-PHOSPHO-L-SERINE2-OXOGLUTARATE AMINOTRANSFERASE |
ATCG00830 | Predictedpull down | FSW = 0.0175
| Class C:plastid | ENCODES A CHLOROPLAST RIBOSOMAL PROTEIN L2 A CONSTITUENT OF THE LARGE SUBUNIT OF THE RIBOSOMAL COMPLEX |
AT4G37910 | Predictedpull down | FSW = 0.0257
| Unknown | MTHSC70-1 (MITOCHONDRIAL HEAT SHOCK PROTEIN 70-1) ATP BINDING |
AT3G04520 | Predictedinterologs mapping | FSW = 0.1113
| Unknown | THA2 (THREONINE ALDOLASE 2) THREONINE ALDOLASE |
AT2G30110 | PredictedAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.0241
| Unknown | ATUBA1 UBIQUITIN ACTIVATING ENZYME/ UBIQUITIN-PROTEIN LIGASE |
AT5G19180 | PredictedPhenotypic Enhancement | FSW = 0.0336
| Unknown | ECR1 (E1 C-TERMINAL RELATED 1) NEDD8 ACTIVATING ENZYME/ PROTEIN HETERODIMERIZATION/ SMALL PROTEIN ACTIVATING ENZYME |
AT2G22310 | PredictedPhenotypic Enhancement | FSW = 0.0325
| Unknown | ATUBP4 (ARABIDOPSIS THALIANA UBIQUITIN-SPECIFIC PROTEASE 4) UBIQUITIN-SPECIFIC PROTEASE |
AT4G04955 | Predictedpull down | FSW = 0.0471
| Unknown | ATALN (ARABIDOPSIS ALLANTOINASE) ALLANTOINASE/ HYDROLASE |
AT3G18860 | PredictedPhenotypic Suppression | FSW = 0.0250
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT5G27970 | PredictedPhenotypic Enhancement | FSW = 0.0177
| Unknown | BINDING |
AT5G45600 | PredictedPhenotypic Enhancement | FSW = 0.0208
| Unknown | GAS41 PROTEIN BINDING |
AT1G08630 | Predictedinterologs mapping | FSW = 0.0909
| Unknown | THA1 (THREONINE ALDOLASE 1) ALDEHYDE-LYASE/ THREONINE ALDOLASE |
AT3G03110 | Predictedtwo hybridinteraction prediction | FSW = 0.0122
| Unknown | XPO1B BINDING / PROTEIN TRANSPORTER |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454