Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G17870 - ( cold-shock DNA-binding family protein )

18 Proteins interacs with AT2G17870
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT1G43170

Predicted

Affinity Capture-MS

FSW = 0.0131

Unknown

ARP1 (ARABIDOPSIS RIBOSOMAL PROTEIN 1) STRUCTURAL CONSTITUENT OF RIBOSOME
AT5G02450

Predicted

Affinity Capture-MS

FSW = 0.0426

Unknown

60S RIBOSOMAL PROTEIN L36 (RPL36C)
AT2G32080

Predicted

Affinity Capture-MS

FSW = 0.0410

Unknown

PUR ALPHA-1 NUCLEIC ACID BINDING
AT5G61170

Predicted

Affinity Capture-MS

FSW = 0.0443

Unknown

40S RIBOSOMAL PROTEIN S19 (RPS19C)
AT3G58660

Predicted

Affinity Capture-MS

FSW = 0.0582

Unknown

60S RIBOSOMAL PROTEIN-RELATED
AT4G00830

Predicted

Affinity Capture-MS

FSW = 0.0504

Unknown

RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN
AT1G16870

Predicted

Affinity Capture-MS

FSW = 0.1088

Unknown

MITOCHONDRIAL 28S RIBOSOMAL PROTEIN S29-RELATED
AT5G18380

Predicted

Affinity Capture-MS

FSW = 0.0139

Unknown

40S RIBOSOMAL PROTEIN S16 (RPS16C)
AT3G55750

Predicted

Affinity Capture-MS

FSW = 0.0482

Unknown

60S RIBOSOMAL PROTEIN L35A (RPL35AD)
AT3G22660

Predicted

Affinity Capture-MS

FSW = 0.0850

Unknown

RRNA PROCESSING PROTEIN-RELATED
AT5G56710

Predicted

Affinity Capture-MS

FSW = 0.0357

Unknown

60S RIBOSOMAL PROTEIN L31 (RPL31C)
AT1G58050

Predicted

Affinity Capture-MS

FSW = 0.0586

Unknown

HELICASE DOMAIN-CONTAINING PROTEIN
AT3G15460

Predicted

Affinity Capture-MS

FSW = 0.0556

Unknown

BRIX DOMAIN-CONTAINING PROTEIN
AT3G28900

Predicted

Affinity Capture-MS

FSW = 0.0410

Unknown

60S RIBOSOMAL PROTEIN L34 (RPL34C)
AT3G55280

Predicted

Affinity Capture-MS

FSW = 0.0476

Unknown

RPL23AB (RIBOSOMAL PROTEIN L23AB) RNA BINDING / NUCLEOTIDE BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME
AT5G10810

Predicted

Affinity Capture-MS

FSW = 0.0423

Unknown

ATER
AT5G46190

Predicted

Affinity Capture-MS

FSW = 0.0169

Unknown

KH DOMAIN-CONTAINING PROTEIN
AT5G67540

Predicted

Affinity Capture-MS

FSW = 0.0119

Unknown

GLYCOSYL HYDROLASE FAMILY PROTEIN 43

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Fasta sequences:

Proteins

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454