Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G17930 - ( binding / inositol or phosphatidylinositol kinase/ phosphotransferase alcohol group as acceptor )
31 Proteins interacs with AT2G17930Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G22330 | PredictedAffinity Capture-Western | FSW = 0.1083
| Unknown | RIN1 (RESISTANCE TO PSEUDOMONAS SYRINGAE PV MACULICOLA INTERACTOR 1) PROTEIN BINDING |
AT4G04350 | Predictedinteraction prediction | FSW = 0.0196
| Unknown | EMB2369 (EMBRYO DEFECTIVE 2369) ATP BINDING / AMINOACYL-TRNA LIGASE/ LEUCINE-TRNA LIGASE/ NUCLEOTIDE BINDING |
AT3G54610 | PredictedAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSinterologs mappinginteraction prediction | FSW = 0.2125
| Unknown | GCN5 DNA BINDING / H3 HISTONE ACETYLTRANSFERASE/ HISTONE ACETYLTRANSFERASE |
AT3G06010 | Predictedsynthetic growth defectCo-expression | FSW = 0.2124
| Unknown | ATCHR12 ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING |
AT1G06960 | Predictedtwo hybridinteraction prediction | FSW = 0.0045
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN U2B PUTATIVE / SPLICEOSOMAL PROTEIN PUTATIVE |
AT1G18450 | Predictedco-fractionationCo-fractionationAffinity Capture-Western | FSW = 0.1115
| Unknown | ATARP4 STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT4G31720 | PredictedAffinity Capture-MSCo-purificationinterologs mappinginteraction prediction | FSW = 0.1259
| Unknown | TAFII15 (TBP-ASSOCIATED FACTOR II 15) RNA POLYMERASE II TRANSCRIPTION FACTOR/ TRANSCRIPTION FACTOR |
AT1G02740 | PredictedAffinity Capture-MS | FSW = 0.1815
| Unknown | CHROMATIN BINDING |
AT3G06720 | Predictedinteraction prediction | FSW = 0.0375
| Unknown | IMPA-1 (IMPORTIN ALPHA ISOFORM 1) BINDING / PROTEIN TRANSPORTER |
AT5G25150 | PredictedAffinity Capture-MSinterologs mappinginteraction prediction | FSW = 0.1633
| Unknown | TAF5 (TBP-ASSOCIATED FACTOR 5) NUCLEOTIDE BINDING / TRANSCRIPTION REGULATOR |
AT1G55520 | PredictedAffinity Capture-MS | FSW = 0.1231
| Unknown | TBP2 (TATA BINDING PROTEIN 2) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ TATA-BINDING PROTEIN BINDING |
AT2G13370 | PredictedAffinity Capture-MS | FSW = 0.1688
| Unknown | CHR5 (CHROMATIN REMODELING 5) ATP BINDING / DNA BINDING / CHROMATIN BINDING / HELICASE/ NUCLEIC ACID BINDING |
AT2G47210 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-Western | FSW = 0.1524
| Unknown | MYB FAMILY TRANSCRIPTION FACTOR |
AT4G16420 | Predictedco-fractionationCo-fractionationinterologs mappinginteraction predictionCo-expression | FSW = 0.0722
| Unknown | ADA2B (HOMOLOG OF YEAST ADA2 2B) DNA BINDING / TRANSCRIPTION COACTIVATOR/ TRANSCRIPTION FACTOR |
AT4G26840 | PredictedAffinity Capture-MS | FSW = 0.0106
| Unknown | SUMO1 (SMALL UBIQUITIN-LIKE MODIFIER 1) PROTEIN BINDING / PROTEIN TAG |
AT2G46810 | PredictedAffinity Capture-WesternAffinity Capture-Western | FSW = 0.0256
| Unknown | BASIC HELIX-LOOP-HELIX (BHLH) FAMILY PROTEIN |
AT2G18000 | PredictedAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-Western | FSW = 0.1380
| Unknown | TAF14 (TBP-ASSOCIATED FACTOR 14) |
AT2G10440 | PredictedAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-Westerninteraction prediction | FSW = 0.3636
| Unknown | UNKNOWN PROTEIN |
AT1G54140 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternCo-purificationinteraction predictionCo-expression | FSW = 0.1592
| Unknown | TAFII21 (TATA BINDING PROTEIN ASSOCIATED FACTOR 21KDA SUBUNIT) DNA BINDING / TRANSCRIPTION INITIATION FACTOR |
AT1G04950 | PredictedAffinity Capture-MSAffinity Capture-MSinterologs mappinginteraction prediction | FSW = 0.2130
| Unknown | TAF6 (TBP-ASSOCIATED FACTOR 6) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ TRANSCRIPTION INITIATION FACTOR |
AT3G07740 | PredictedAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Western | FSW = 0.2946
| Unknown | ADA2A (HOMOLOG OF YEAST ADA2 2A) DNA BINDING / TRANSCRIPTION FACTOR |
AT5G10790 | PredictedAffinity Capture-MSAffinity Capture-Western | FSW = 0.2311
| Unknown | UBP22 (UBIQUITIN-SPECIFIC PROTEASE 22) UBIQUITIN THIOLESTERASE/ UBIQUITIN-SPECIFIC PROTEASE/ ZINC ION BINDING |
AT1G52740 | PredictedAffinity Capture-MS | FSW = 0.1456
| Unknown | HTA9 (HISTONE H2A PROTEIN 9) DNA BINDING |
AT5G09740 | PredictedCo-purificationCo-purificationAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternCo-purificationinteraction prediction | FSW = 0.1431
| Unknown | HAM2 (HISTONE ACETYLTRANSFERASE OF THE MYST FAMILY 2) H3/H4 HISTONE ACETYLTRANSFERASE/ HISTONE ACETYLTRANSFERASE/ NUCLEIC ACID BINDING / ZINC ION BINDING |
AT1G07990 | PredictedAffinity Capture-MS | FSW = 0.0490
| Unknown | SIT4 PHOSPHATASE-ASSOCIATED FAMILY PROTEIN |
AT1G02690 | PredictedAffinity Capture-MS | FSW = 0.0308
| Unknown | IMPA-6 (IMPORTIN ALPHA ISOFORM 6) BINDING / PROTEIN TRANSPORTER |
AT1G08880 | PredictedAffinity Capture-MSAffinity Capture-Western | FSW = 0.0866
| Unknown | H2AXA DNA BINDING |
AT1G54390 | Predictedinteraction predictionAffinity Capture-WesternAffinity Capture-Westerntwo hybrid | FSW = 0.1521
| Unknown | PHD FINGER PROTEIN-RELATED |
AT2G07690 | Predictedinterologs mapping | FSW = 0.0107
| Unknown | MINICHROMOSOME MAINTENANCE FAMILY PROTEIN / MCM FAMILY PROTEIN |
AT4G37280 | Predictedinteraction prediction | FSW = 0.0741
| Unknown | MRG FAMILY PROTEIN |
AT2G28360 | Predictedinteraction prediction | FSW = 0.0245
| Unknown | INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN ENDOMEMBRANE SYSTEM EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S SIT4 PHOSPHATASE-ASSOCIATED PROTEIN (INTERPROIPR007587) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS SIT4 PHOSPHATASE-ASSOCIATED FAMILY PROTEIN (TAIRAT1G079901) HAS 1431 BLAST HITS TO 1107 PROTEINS IN 182 SPECIES ARCHAE - 2 BACTERIA - 108 METAZOA - 552 FUNGI - 305 PLANTS - 89 VIRUSES - 18 OTHER EUKARYOTES - 357 (SOURCE NCBI BLINK) |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454