Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G18000 - ( TAF14 (TBP-associated factor 14) )
58 Proteins interacs with AT2G18000Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G58470 | Experimentaltwo hybrid | FSW = 0.1237
| Unknown | TAF15B (TBP-ASSOCIATED FACTOR 15B) BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING / ZINC ION BINDING |
AT1G17440 | Experimentaltwo hybrid | FSW = 0.2766
| Unknown | EER4 (ENHANCED ETHYLENE RESPONSE 4) DNA BINDING / TRANSCRIPTION INITIATION FACTOR |
AT1G02680 | Experimentaltwo hybrid | FSW = 0.1313
| Unknown | TAF13 (TBP-ASSOCIATED FACTOR 13) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR |
AT5G25150 | Experimentaltwo hybrid | FSW = 0.1155
| Unknown | TAF5 (TBP-ASSOCIATED FACTOR 5) NUCLEOTIDE BINDING / TRANSCRIPTION REGULATOR |
AT1G27720 | Experimentaltwo hybrid | FSW = 0.1833
| Unknown | TAF4B (TBP-ASSOCIATED FACTOR 4B) TRANSCRIPTION INITIATION FACTOR |
AT5G45600 | Experimentaltwo hybrid | FSW = 0.4861
| Unknown | GAS41 PROTEIN BINDING |
AT5G43130 | Experimentaltwo hybrid | FSW = 0.2469
| Unknown | TAF4 (TBP-ASSOCIATED FACTOR 4) TRANSCRIPTION INITIATION FACTOR |
AT1G32750 | Experimental | FSW = 0.1064
| Unknown | HAF01 DNA BINDING / HISTONE ACETYLTRANSFERASE |
AT4G34340 | Experimentaltwo hybrid | FSW = 0.2319
| Unknown | TAF8 (TBP-ASSOCIATED FACTOR 8) DNA BINDING |
AT3G10070 | Experimentaltwo hybrid | FSW = 0.1313
| Unknown | TAF12 (TBP-ASSOCIATED FACTOR 12) DNA BINDING / TRANSCRIPTION INITIATION FACTOR |
AT1G49240 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0567
| Unknown | ACT8 (ACTIN 8) COPPER ION BINDING / STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT5G22330 | PredictedAffinity Capture-MS | FSW = 0.1067
| Unknown | RIN1 (RESISTANCE TO PSEUDOMONAS SYRINGAE PV MACULICOLA INTERACTOR 1) PROTEIN BINDING |
AT1G12520 | PredictedSynthetic Lethality | FSW = 0.1180
| Unknown | ATCCS (COPPER CHAPERONE FOR SOD1) SUPEROXIDE DISMUTASE/ SUPEROXIDE DISMUTASE COPPER CHAPERONE |
AT3G49830 | PredictedAffinity Capture-MS | FSW = 0.0530
| Unknown | DNA HELICASE-RELATED |
AT1G11890 | PredictedSynthetic Lethality | FSW = 0.1218
| Unknown | SEC22 TRANSPORTER |
AT3G12810 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Western | FSW = 0.4066
| Unknown | PIE1 (PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING |
AT3G44530 | Predictedsynthetic growth defect | FSW = 0.1431
| Unknown | HIRA (ARABIDOPSIS HOMOLOG OF HISTONE CHAPERONE HIRA) NUCLEOTIDE BINDING / PROTEIN BINDING |
AT1G02740 | PredictedAffinity Capture-MSAffinity Capture-MSSynthetic Lethality | FSW = 0.3274
| Unknown | CHROMATIN BINDING |
AT2G47210 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Westerntwo hybrid | FSW = 0.1998
| Unknown | MYB FAMILY TRANSCRIPTION FACTOR |
AT1G06230 | PredictedAffinity Capture-MSAffinity Capture-Westerninterologs mapping | FSW = 0.1820
| Unknown | GTE4 (GLOBAL TRANSCRIPTION FACTOR GROUP E 4) DNA BINDING |
AT2G22290 | PredictedSynthetic Lethality | FSW = 0.0456
| Unknown | ATRABH1D (ARABIDOPSIS RAB GTPASE HOMOLOG H1D) GTP BINDING |
AT3G47690 | PredictedSynthetic Lethality | FSW = 0.2730
| Unknown | ATEB1A MICROTUBULE BINDING |
AT3G25980 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.0853
| Unknown | MITOTIC SPINDLE CHECKPOINT PROTEIN PUTATIVE (MAD2) |
AT2G17930 | PredictedAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-Western | FSW = 0.1380
| Unknown | BINDING / INOSITOL OR PHOSPHATIDYLINOSITOL KINASE/ PHOSPHOTRANSFERASE ALCOHOL GROUP AS ACCEPTOR |
AT5G13680 | PredictedAffinity Capture-MS | FSW = 0.1845
| Unknown | ABO1 (ABA-OVERLY SENSITIVE 1) TRANSCRIPTION ELONGATION REGULATOR |
AT5G09740 | PredictedAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternSynthetic Lethality | FSW = 0.3159
| Unknown | HAM2 (HISTONE ACETYLTRANSFERASE OF THE MYST FAMILY 2) H3/H4 HISTONE ACETYLTRANSFERASE/ HISTONE ACETYLTRANSFERASE/ NUCLEIC ACID BINDING / ZINC ION BINDING |
AT1G54390 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Western | FSW = 0.1901
| Unknown | PHD FINGER PROTEIN-RELATED |
AT1G52740 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3374
| Unknown | HTA9 (HISTONE H2A PROTEIN 9) DNA BINDING |
AT3G06740 | Predictedinterologs mapping | FSW = 0.0159
| Unknown | ZINC FINGER (GATA TYPE) FAMILY PROTEIN |
AT5G26680 | Predictedsynthetic growth defect | FSW = 0.1868
| Unknown | ENDONUCLEASE PUTATIVE |
AT5G13780 | Predictedsynthetic growth defect | FSW = 0.1575
| Unknown | GCN5-RELATED N-ACETYLTRANSFERASE PUTATIVE |
AT4G25120 | Predictedsynthetic growth defect | FSW = 0.0955
| Unknown | ATP BINDING / ATP-DEPENDENT DNA HELICASE/ DNA BINDING / HYDROLASE |
AT3G58560 | Predictedsynthetic growth defect | FSW = 0.1613
| Unknown | ENDONUCLEASE/EXONUCLEASE/PHOSPHATASE FAMILY PROTEIN |
AT3G42660 | Predictedsynthetic growth defect | FSW = 0.2512
| Unknown | NUCLEOTIDE BINDING |
AT3G07120 | Predictedsynthetic growth defect | FSW = 0.1623
| Unknown | ZINC FINGER (C3HC4-TYPE RING FINGER) FAMILY PROTEIN |
AT2G44580 | Predictedsynthetic growth defect | FSW = 0.2307
| Unknown | PROTEIN BINDING / ZINC ION BINDING |
AT1G80410 | Predictedsynthetic growth defect | FSW = 0.1402
| Unknown | EMB2753 (EMBRYO DEFECTIVE 2753) BINDING |
AT1G15920 | Predictedsynthetic growth defect | FSW = 0.1558
| Unknown | CCR4-NOT TRANSCRIPTION COMPLEX PROTEIN PUTATIVE |
AT1G04730 | Predictedsynthetic growth defect | FSW = 0.1960
| Unknown | AAA-TYPE ATPASE FAMILY PROTEIN |
AT5G53770 | PredictedSynthetic Lethality | FSW = 0.1043
| Unknown | NUCLEOTIDYLTRANSFERASE FAMILY PROTEIN |
AT1G66740 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.1874
| Unknown | SGA2 |
AT1G55255 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.1556
| Unknown | SGA2 |
AT1G14400 | PredictedSynthetic Lethality | FSW = 0.1485
| Unknown | UBC1 (UBIQUITIN CARRIER PROTEIN 1) UBIQUITIN-PROTEIN LIGASE |
AT1G54140 | PredictedSynthetic Lethality | FSW = 0.1830
| Unknown | TAFII21 (TATA BINDING PROTEIN ASSOCIATED FACTOR 21KDA SUBUNIT) DNA BINDING / TRANSCRIPTION INITIATION FACTOR |
AT5G67320 | PredictedSynthetic Lethality | FSW = 0.1279
| Unknown | HOS15 (HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 15) |
AT5G61150 | PredictedSynthetic Lethality | FSW = 0.1780
| Unknown | VIP4 (VERNALIZATION INDEPENDENCE 4) PROTEIN BINDING |
AT5G49510 | PredictedSynthetic Lethality | FSW = 0.1522
| Unknown | PDF3 (PREFOLDIN 3) UNFOLDED PROTEIN BINDING |
AT5G23290 | PredictedSynthetic Lethality | FSW = 0.1532
| Unknown | PDF5 (PREFOLDIN 5) UNFOLDED PROTEIN BINDING |
AT4G30890 | PredictedSynthetic Lethality | FSW = 0.1100
| Unknown | UBP24 (UBIQUITIN-SPECIFIC PROTEASE 24) UBIQUITIN THIOLESTERASE/ UBIQUITIN-SPECIFIC PROTEASE |
AT3G49660 | PredictedSynthetic Lethality | FSW = 0.1131
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT3G22590 | PredictedSynthetic Lethality | FSW = 0.1701
| Unknown | RNA POL II ACCESSORY FACTOR CDC73 FAMILY PROTEIN |
AT3G22480 | PredictedSynthetic Lethality | FSW = 0.1220
| Unknown | PREFOLDIN-RELATED KE2 FAMILY PROTEIN |
AT3G21060 | PredictedSynthetic Lethality | FSW = 0.1928
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT2G44150 | PredictedSynthetic Lethality | FSW = 0.2305
| Unknown | ASHH3 (HISTONE-LYSINE N-METHYLTRANSFERASE ASHH3) HISTONE-LYSINE N-METHYLTRANSFERASE |
AT1G61040 | PredictedSynthetic Lethality | FSW = 0.2100
| Unknown | VIP5 (VERNALIZATION INDEPENDENCE 5) DNA BINDING |
AT1G10450 | PredictedSynthetic Lethality | FSW = 0.2339
| Unknown | SNL6 (SIN3-LIKE 6) |
AT1G08780 | PredictedSynthetic Lethality | FSW = 0.1542
| Unknown | AIP3 (ABI3-INTERACTING PROTEIN 3) UNFOLDED PROTEIN BINDING |
AT1G13580 | Predictedtwo hybrid | FSW = 0.0050
| Unknown | LAG13 (LAG1 LONGEVITY ASSURANCE HOMOLOG 3) |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454