Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G18000 - ( TAF14 (TBP-associated factor 14) )

58 Proteins interacs with AT2G18000
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT5G58470

Experimental

two hybrid

FSW = 0.1237

Unknown

TAF15B (TBP-ASSOCIATED FACTOR 15B) BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING / ZINC ION BINDING
AT1G17440

Experimental

two hybrid

FSW = 0.2766

Unknown

EER4 (ENHANCED ETHYLENE RESPONSE 4) DNA BINDING / TRANSCRIPTION INITIATION FACTOR
AT1G02680

Experimental

two hybrid

FSW = 0.1313

Unknown

TAF13 (TBP-ASSOCIATED FACTOR 13) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR
AT5G25150

Experimental

two hybrid

FSW = 0.1155

Unknown

TAF5 (TBP-ASSOCIATED FACTOR 5) NUCLEOTIDE BINDING / TRANSCRIPTION REGULATOR
AT1G27720

Experimental

two hybrid

FSW = 0.1833

Unknown

TAF4B (TBP-ASSOCIATED FACTOR 4B) TRANSCRIPTION INITIATION FACTOR
AT5G45600

Experimental

two hybrid

FSW = 0.4861

Unknown

GAS41 PROTEIN BINDING
AT5G43130

Experimental

two hybrid

FSW = 0.2469

Unknown

TAF4 (TBP-ASSOCIATED FACTOR 4) TRANSCRIPTION INITIATION FACTOR
AT1G32750

Experimental

FSW = 0.1064

Unknown

HAF01 DNA BINDING / HISTONE ACETYLTRANSFERASE
AT4G34340

Experimental

two hybrid

FSW = 0.2319

Unknown

TAF8 (TBP-ASSOCIATED FACTOR 8) DNA BINDING
AT3G10070

Experimental

two hybrid

FSW = 0.1313

Unknown

TAF12 (TBP-ASSOCIATED FACTOR 12) DNA BINDING / TRANSCRIPTION INITIATION FACTOR
AT1G49240

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0567

Unknown

ACT8 (ACTIN 8) COPPER ION BINDING / STRUCTURAL CONSTITUENT OF CYTOSKELETON
AT5G22330

Predicted

Affinity Capture-MS

FSW = 0.1067

Unknown

RIN1 (RESISTANCE TO PSEUDOMONAS SYRINGAE PV MACULICOLA INTERACTOR 1) PROTEIN BINDING
AT1G12520

Predicted

Synthetic Lethality

FSW = 0.1180

Unknown

ATCCS (COPPER CHAPERONE FOR SOD1) SUPEROXIDE DISMUTASE/ SUPEROXIDE DISMUTASE COPPER CHAPERONE
AT3G49830

Predicted

Affinity Capture-MS

FSW = 0.0530

Unknown

DNA HELICASE-RELATED
AT1G11890

Predicted

Synthetic Lethality

FSW = 0.1218

Unknown

SEC22 TRANSPORTER
AT3G12810

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

FSW = 0.4066

Unknown

PIE1 (PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING
AT3G44530

Predicted

synthetic growth defect

FSW = 0.1431

Unknown

HIRA (ARABIDOPSIS HOMOLOG OF HISTONE CHAPERONE HIRA) NUCLEOTIDE BINDING / PROTEIN BINDING
AT1G02740

Predicted

Affinity Capture-MS

Affinity Capture-MS

Synthetic Lethality

FSW = 0.3274

Unknown

CHROMATIN BINDING
AT2G47210

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

two hybrid

FSW = 0.1998

Unknown

MYB FAMILY TRANSCRIPTION FACTOR
AT1G06230

Predicted

Affinity Capture-MS

Affinity Capture-Western

interologs mapping

FSW = 0.1820

Unknown

GTE4 (GLOBAL TRANSCRIPTION FACTOR GROUP E 4) DNA BINDING
AT2G22290

Predicted

Synthetic Lethality

FSW = 0.0456

Unknown

ATRABH1D (ARABIDOPSIS RAB GTPASE HOMOLOG H1D) GTP BINDING
AT3G47690

Predicted

Synthetic Lethality

FSW = 0.2730

Unknown

ATEB1A MICROTUBULE BINDING
AT3G25980

Predicted

Synthetic Lethality

Synthetic Lethality

FSW = 0.0853

Unknown

MITOTIC SPINDLE CHECKPOINT PROTEIN PUTATIVE (MAD2)
AT2G17930

Predicted

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

FSW = 0.1380

Unknown

BINDING / INOSITOL OR PHOSPHATIDYLINOSITOL KINASE/ PHOSPHOTRANSFERASE ALCOHOL GROUP AS ACCEPTOR
AT5G13680

Predicted

Affinity Capture-MS

FSW = 0.1845

Unknown

ABO1 (ABA-OVERLY SENSITIVE 1) TRANSCRIPTION ELONGATION REGULATOR
AT5G09740

Predicted

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

Synthetic Lethality

FSW = 0.3159

Unknown

HAM2 (HISTONE ACETYLTRANSFERASE OF THE MYST FAMILY 2) H3/H4 HISTONE ACETYLTRANSFERASE/ HISTONE ACETYLTRANSFERASE/ NUCLEIC ACID BINDING / ZINC ION BINDING
AT1G54390

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

FSW = 0.1901

Unknown

PHD FINGER PROTEIN-RELATED
AT1G52740

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.3374

Unknown

HTA9 (HISTONE H2A PROTEIN 9) DNA BINDING
AT3G06740

Predicted

interologs mapping

FSW = 0.0159

Unknown

ZINC FINGER (GATA TYPE) FAMILY PROTEIN
AT5G26680

Predicted

synthetic growth defect

FSW = 0.1868

Unknown

ENDONUCLEASE PUTATIVE
AT5G13780

Predicted

synthetic growth defect

FSW = 0.1575

Unknown

GCN5-RELATED N-ACETYLTRANSFERASE PUTATIVE
AT4G25120Predicted

synthetic growth defect

FSW = 0.0955

Unknown

ATP BINDING / ATP-DEPENDENT DNA HELICASE/ DNA BINDING / HYDROLASE
AT3G58560

Predicted

synthetic growth defect

FSW = 0.1613

Unknown

ENDONUCLEASE/EXONUCLEASE/PHOSPHATASE FAMILY PROTEIN
AT3G42660

Predicted

synthetic growth defect

FSW = 0.2512

Unknown

NUCLEOTIDE BINDING
AT3G07120

Predicted

synthetic growth defect

FSW = 0.1623

Unknown

ZINC FINGER (C3HC4-TYPE RING FINGER) FAMILY PROTEIN
AT2G44580

Predicted

synthetic growth defect

FSW = 0.2307

Unknown

PROTEIN BINDING / ZINC ION BINDING
AT1G80410

Predicted

synthetic growth defect

FSW = 0.1402

Unknown

EMB2753 (EMBRYO DEFECTIVE 2753) BINDING
AT1G15920

Predicted

synthetic growth defect

FSW = 0.1558

Unknown

CCR4-NOT TRANSCRIPTION COMPLEX PROTEIN PUTATIVE
AT1G04730Predicted

synthetic growth defect

FSW = 0.1960

Unknown

AAA-TYPE ATPASE FAMILY PROTEIN
AT5G53770

Predicted

Synthetic Lethality

FSW = 0.1043

Unknown

NUCLEOTIDYLTRANSFERASE FAMILY PROTEIN
AT1G66740

Predicted

Synthetic Lethality

Synthetic Lethality

FSW = 0.1874

Unknown

SGA2
AT1G55255Predicted

Synthetic Lethality

Synthetic Lethality

FSW = 0.1556

Unknown

SGA2
AT1G14400

Predicted

Synthetic Lethality

FSW = 0.1485

Unknown

UBC1 (UBIQUITIN CARRIER PROTEIN 1) UBIQUITIN-PROTEIN LIGASE
AT1G54140

Predicted

Synthetic Lethality

FSW = 0.1830

Unknown

TAFII21 (TATA BINDING PROTEIN ASSOCIATED FACTOR 21KDA SUBUNIT) DNA BINDING / TRANSCRIPTION INITIATION FACTOR
AT5G67320

Predicted

Synthetic Lethality

FSW = 0.1279

Unknown

HOS15 (HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 15)
AT5G61150

Predicted

Synthetic Lethality

FSW = 0.1780

Unknown

VIP4 (VERNALIZATION INDEPENDENCE 4) PROTEIN BINDING
AT5G49510

Predicted

Synthetic Lethality

FSW = 0.1522

Unknown

PDF3 (PREFOLDIN 3) UNFOLDED PROTEIN BINDING
AT5G23290

Predicted

Synthetic Lethality

FSW = 0.1532

Unknown

PDF5 (PREFOLDIN 5) UNFOLDED PROTEIN BINDING
AT4G30890

Predicted

Synthetic Lethality

FSW = 0.1100

Unknown

UBP24 (UBIQUITIN-SPECIFIC PROTEASE 24) UBIQUITIN THIOLESTERASE/ UBIQUITIN-SPECIFIC PROTEASE
AT3G49660

Predicted

Synthetic Lethality

FSW = 0.1131

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT3G22590

Predicted

Synthetic Lethality

FSW = 0.1701

Unknown

RNA POL II ACCESSORY FACTOR CDC73 FAMILY PROTEIN
AT3G22480

Predicted

Synthetic Lethality

FSW = 0.1220

Unknown

PREFOLDIN-RELATED KE2 FAMILY PROTEIN
AT3G21060

Predicted

Synthetic Lethality

FSW = 0.1928

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT2G44150

Predicted

Synthetic Lethality

FSW = 0.2305

Unknown

ASHH3 (HISTONE-LYSINE N-METHYLTRANSFERASE ASHH3) HISTONE-LYSINE N-METHYLTRANSFERASE
AT1G61040

Predicted

Synthetic Lethality

FSW = 0.2100

Unknown

VIP5 (VERNALIZATION INDEPENDENCE 5) DNA BINDING
AT1G10450

Predicted

Synthetic Lethality

FSW = 0.2339

Unknown

SNL6 (SIN3-LIKE 6)
AT1G08780

Predicted

Synthetic Lethality

FSW = 0.1542

Unknown

AIP3 (ABI3-INTERACTING PROTEIN 3) UNFOLDED PROTEIN BINDING
AT1G13580

Predicted

two hybrid

FSW = 0.0050

Unknown

LAG13 (LAG1 LONGEVITY ASSURANCE HOMOLOG 3)

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Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454