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AT2G18020 - ( EMB2296 (embryo defective 2296) structural constituent of ribosome )

61 Proteins interacs with AT2G18020

Locus	Method	FSW	Cellular Compartment Classification (C3)	Description
AT1G78300	Experimental	FSW = 0.0017	Class A: vacuole plasma membrane nucleus Class B: plastid peroxisome cytosol cytoskeleton Class D: cytosol (p = 0.67)	GRF2 (GENERAL REGULATORY FACTOR 2) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING
AT3G49910	Predicted Affinity Capture-MS	FSW = 0.3916	Class C: vacuole plastid plasma membrane nucleus	60S RIBOSOMAL PROTEIN L26 (RPL26A)
AT4G31700	Predicted Affinity Capture-MS	FSW = 0.4644	Class C: vacuole plastid plasma membrane nucleus	RPS6 (RIBOSOMAL PROTEIN S6) STRUCTURAL CONSTITUENT OF RIBOSOME
AT3G09630	Predicted Affinity Capture-MS	FSW = 0.3503	Class C: vacuole plastid plasma membrane nucleus	60S RIBOSOMAL PROTEIN L4/L1 (RPL4A)
AT2G42740	Predicted Affinity Capture-MS	FSW = 0.6270	Class C: vacuole plastid plasma membrane nucleus	RPL16A STRUCTURAL CONSTITUENT OF RIBOSOME
AT3G09200	Predicted Affinity Capture-MS	FSW = 0.3610	Class C: vacuole plastid plasma membrane nucleus	60S ACIDIC RIBOSOMAL PROTEIN P0 (RPP0B)
AT2G17360	Predicted Affinity Capture-MS	FSW = 0.2513	Class C: vacuole plastid plasma membrane	40S RIBOSOMAL PROTEIN S4 (RPS4A)
AT2G47610	Predicted Affinity Capture-MS	FSW = 0.4443	Class C: vacuole plastid nucleus	60S RIBOSOMAL PROTEIN L7A (RPL7AA)
AT1G33140	Predicted Affinity Capture-MS	FSW = 0.4852	Class C: vacuole plastid	PGY2 (PIGGYBACK2) STRUCTURAL CONSTITUENT OF RIBOSOME
AT3G04920	Predicted Affinity Capture-MS	FSW = 0.5526	Class C: vacuole plasma membrane nucleus	40S RIBOSOMAL PROTEIN S24 (RPS24A)
AT3G49010	Predicted Affinity Capture-MS	FSW = 0.4650	Class C: vacuole plasma membrane nucleus	ATBBC1 (ARABIDOPSIS THALIANA BREAST BASIC CONSERVED 1) STRUCTURAL CONSTITUENT OF RIBOSOME
AT1G67430	Predicted Affinity Capture-MS	FSW = 0.5504	Class C: vacuole plasma membrane nucleus	60S RIBOSOMAL PROTEIN L17 (RPL17B)
AT4G36130	Predicted Enriched domain pair Gene fusion method Phylogenetic profile method	FSW = 0.0481	Class C: vacuole plasma membrane	60S RIBOSOMAL PROTEIN L8 (RPL8C)
AT2G37270	Predicted Affinity Capture-MS	FSW = 0.3892	Class C: vacuole plasma membrane	ATRPS5B (RIBOSOMAL PROTEIN 5B) STRUCTURAL CONSTITUENT OF RIBOSOME
AT1G07770	Predicted Affinity Capture-MS	FSW = 0.4515	Class C: vacuole plasma membrane	RPS15A (RIBOSOMAL PROTEIN S15A) STRUCTURAL CONSTITUENT OF RIBOSOME
AT2G34480	Predicted Affinity Capture-MS	FSW = 0.4165	Class C: vacuole plasma membrane	60S RIBOSOMAL PROTEIN L18A (RPL18AB)
AT3G22630	Predicted Affinity Capture-MS	FSW = 0.0238	Class C: vacuole plasma membrane	PBD1 (20S PROTEASOME BETA SUBUNIT D1) PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT5G27850	Predicted Affinity Capture-MS	FSW = 0.2511	Class C: vacuole plasma membrane	60S RIBOSOMAL PROTEIN L18 (RPL18C)
AT3G57990	Predicted Synthetic Lethality	FSW = 0.0068	Class C: vacuole	UNKNOWN PROTEIN
AT1G34030	Predicted Affinity Capture-MS	FSW = 0.2700	Class C: vacuole	40S RIBOSOMAL PROTEIN S18 (RPS18B)
AT1G66580	Predicted Affinity Capture-MS	FSW = 0.5486	Class C: vacuole	60S RIBOSOMAL PROTEIN L10 (RPL10C)
AT4G14800	Predicted Affinity Capture-MS	FSW = 0.0186	Class C: vacuole	PBD2 (20S PROTEASOME BETA SUBUNIT 2) PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT2G09990	Predicted Affinity Capture-MS	FSW = 0.5532	Class C: plastid plasma membrane	40S RIBOSOMAL PROTEIN S16 (RPS16A)
AT3G13580	Predicted Affinity Capture-MS	FSW = 0.5336	Class C: plastid	60S RIBOSOMAL PROTEIN L7 (RPL7D)
AT3G58510	Predicted Affinity Capture-MS	FSW = 0.2049	Class C: plasma membrane nucleus	DEAD BOX RNA HELICASE PUTATIVE (RH11)
AT2G27710	Predicted Affinity Capture-MS	FSW = 0.4542	Class C: plasma membrane nucleus	60S ACIDIC RIBOSOMAL PROTEIN P2 (RPP2B)
AT3G11510	Predicted Affinity Capture-MS	FSW = 0.5486	Class C: plasma membrane nucleus	40S RIBOSOMAL PROTEIN S14 (RPS14B)
AT2G37190	Predicted Affinity Capture-MS	FSW = 0.5317	Class C: plasma membrane nucleus	60S RIBOSOMAL PROTEIN L12 (RPL12A)
AT4G00100	Predicted Affinity Capture-MS	FSW = 0.4068	Class C: plasma membrane nucleus	ATRPS13A (ARABIDOPSIS THALIANA RIBOSOMAL PROTEIN S13A) STRUCTURAL CONSTITUENT OF RIBOSOME
AT4G34670	Predicted Affinity Capture-MS	FSW = 0.4810	Class C: plasma membrane nucleus	40S RIBOSOMAL PROTEIN S3A (RPS3AB)
AT3G51190	Predicted Enriched domain pair Phylogenetic profile method	FSW = 0.0923	Class C: plasma membrane	STRUCTURAL CONSTITUENT OF RIBOSOME
AT5G52640	Predicted synthetic growth defect	FSW = 0.0124	Class C: plasma membrane	ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING
AT1G70600	Predicted Affinity Capture-MS	FSW = 0.5157	Class C: plasma membrane	STRUCTURAL CONSTITUENT OF RIBOSOME
AT1G76810	Predicted Affinity Capture-MS	FSW = 0.2911	Class C: plasma membrane	EUKARYOTIC TRANSLATION INITIATION FACTOR 2 FAMILY PROTEIN / EIF-2 FAMILY PROTEIN
AT2G37600	Predicted Affinity Capture-MS	FSW = 0.5294	Class C: plasma membrane	60S RIBOSOMAL PROTEIN L36 (RPL36A)
AT1G74270	Predicted Affinity Capture-MS	FSW = 0.3076	Class C: plasma membrane	60S RIBOSOMAL PROTEIN L35A (RPL35AC)
AT3G53870	Predicted biochemical Affinity Capture-MS	FSW = 0.3627	Class C: plasma membrane	40S RIBOSOMAL PROTEIN S3 (RPS3B)
AT4G15000	Predicted Affinity Capture-MS	FSW = 0.4580	Class C: plasma membrane	60S RIBOSOMAL PROTEIN L27 (RPL27C)
AT5G22440	Predicted Affinity Capture-MS	FSW = 0.5503	Class C: nucleus	60S RIBOSOMAL PROTEIN L10A (RPL10AC)
AT4G17390	Predicted Affinity Capture-MS	FSW = 0.6028	Class C: nucleus	60S RIBOSOMAL PROTEIN L15 (RPL15B)
AT1G74060	Predicted Affinity Capture-MS	FSW = 0.4154	Class C: nucleus	60S RIBOSOMAL PROTEIN L6 (RPL6B)
AT4G25630	Predicted Affinity Capture-MS	FSW = 0.1683	Class C: nucleus	FIB2 (FIBRILLARIN 2) SNORNA BINDING
AT3G16810	Predicted Affinity Capture-MS	FSW = 0.1971	Class C: nucleus	APUM24 (ARABIDOPSIS PUMILIO 24) RNA BINDING / BINDING
AT5G55920	Predicted Affinity Capture-MS	FSW = 0.1626	Class C: nucleus	NUCLEOLAR PROTEIN PUTATIVE
AT3G55620	Predicted Affinity Capture-MS	FSW = 0.1687	Class C: nucleus	EMB1624 (EMBRYO DEFECTIVE 1624) RIBOSOME BINDING / TRANSLATION INITIATION FACTOR
AT5G58420	Predicted Affinity Capture-MS	FSW = 0.5848	Class C: nucleus	40S RIBOSOMAL PROTEIN S4 (RPS4D)
AT5G59240	Predicted Affinity Capture-MS	FSW = 0.4644	Unknown	40S RIBOSOMAL PROTEIN S8 (RPS8B)
AT5G09500	Predicted Affinity Capture-MS	FSW = 0.3428	Unknown	40S RIBOSOMAL PROTEIN S15 (RPS15C)
AT1G61580	Predicted Affinity Capture-MS	FSW = 0.4728	Unknown	RPL3B (R-PROTEIN L3 B) STRUCTURAL CONSTITUENT OF RIBOSOME
AT4G30800	Predicted Affinity Capture-MS	FSW = 0.2680	Unknown	40S RIBOSOMAL PROTEIN S11 (RPS11B)
AT5G56710	Predicted Affinity Capture-MS	FSW = 0.4285	Unknown	60S RIBOSOMAL PROTEIN L31 (RPL31C)
AT1G10490	Predicted Affinity Capture-MS	FSW = 0.2722	Unknown	UNKNOWN PROTEIN
AT3G18740	Predicted Affinity Capture-MS	FSW = 0.5020	Unknown	60S RIBOSOMAL PROTEIN L30 (RPL30C)
AT4G19210	Predicted Affinity Capture-MS	FSW = 0.3057	Unknown	ATRLI2 TRANSPORTER
AT4G21110	Predicted Affinity Capture-MS	FSW = 0.0222	Unknown	G10 FAMILY PROTEIN
AT5G14520	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.1486	Unknown	PESCADILLO-RELATED
AT3G24830	Predicted Affinity Capture-MS	FSW = 0.5260	Unknown	60S RIBOSOMAL PROTEIN L13A (RPL13AB)
AT3G55280	Predicted Affinity Capture-MS	FSW = 0.5004	Unknown	RPL23AB (RIBOSOMAL PROTEIN L23AB) RNA BINDING / NUCLEOTIDE BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME
AT5G65900	Predicted Affinity Capture-MS	FSW = 0.2561	Unknown	DEAD/DEAH BOX HELICASE PUTATIVE
AT3G13640	Predicted Affinity Capture-MS	FSW = 0.1076	Unknown	ATRLI1 TRANSPORTER
AT3G61240	Predicted two hybrid	FSW = 0.0166	Unknown	DEAD/DEAH BOX HELICASE PUTATIVE (RH12)

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from

Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment

Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment

Class C: Same as Class A but the PPI is predicted

Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB

Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

Welcome to AtPIN

AtPIN will be upgraded. Please send your suggestions here

AT2G18020 - ( EMB2296 (embryo defective 2296) structural constituent of ribosome )

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Fasta sequences:

Quick help

FSW

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PEP

How to cite