Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G18040 - ( PIN1AT (PEPTIDYLPROLYL CIS/TRANS ISOMERASE NIMA-INTERACTING 1) peptidyl-prolyl cis-trans isomerase )
54 Proteins interacs with AT2G18040Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G25070 | Experimentalpull down | FSW = 0.0172
| Class A:plasma membraneClass B:vacuole | RIN4 (RPM1 INTERACTING PROTEIN 4) PROTEIN BINDING |
AT4G24540 | Experimentalpull down | FSW = 0.0259
| Class B:plasma membranenucleuscytosol | AGL24 (AGAMOUS-LIKE 24) PROTEIN BINDING / PROTEIN HETERODIMERIZATION/ PROTEIN HOMODIMERIZATION/ SEQUENCE-SPECIFIC DNA BINDING / TRANSCRIPTION FACTOR |
AT2G45660 | Experimentalpull downinteraction detection method | FSW = 0.0194
| Class D:mitochondrion (p = 0.82) | AGL20 (AGAMOUS-LIKE 20) TRANSCRIPTION FACTOR |
AT4G32620 | Experimental | FSW = 0.0164
| Unknown | NUCLEIC ACID BINDING |
AT2G30470 | Experimental | FSW = 0.0166
| Unknown | HSI2 (HIGH-LEVEL EXPRESSION OF SUGAR-INDUCIBLE GENE 2) TRANSCRIPTION FACTOR/ TRANSCRIPTION REPRESSOR |
AT1G53850 | PredictedAffinity Capture-MS | FSW = 0.0163
| Class C:plasma membrane | PAE1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT4G38740 | Predictedinterologs mappingSynthetic Lethality | FSW = 0.0292
| Class C:plasma membrane | ROC1 (ROTAMASE CYP 1) PEPTIDYL-PROLYL CIS-TRANS ISOMERASE |
AT2G16600 | Predictedinterologs mappingSynthetic Lethality | FSW = 0.0278
| Class C:plasma membrane | ROC3 PEPTIDYL-PROLYL CIS-TRANS ISOMERASE |
AT3G48750 | PredictedAffinity Capture-MSin vivo | FSW = 0.0603
| Class C:plasma membrane | CDC2 (CELL DIVISION CONTROL 2) CYCLIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN BINDING / PROTEIN KINASE |
AT3G50000 | PredictedAffinity Capture-MSin vitro | FSW = 0.0345
| Class C:plasma membrane | CKA2 (CASEIN KINASE II ALPHA CHAIN 2) KINASE |
AT2G20580 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0096
| Class C:plasma membrane | RPN1A (26S PROTEASOME REGULATORY SUBUNIT S2 1A) BINDING / ENZYME REGULATOR |
AT5G19330 | PredictedReconstituted Complexin vitroin vivo | FSW = 0.0184
| Class C:plasma membrane | ARMADILLO/BETA-CATENIN REPEAT FAMILY PROTEIN / BTB/POZ DOMAIN-CONTAINING PROTEIN |
AT4G12610 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.1202
| Unknown | TRANSCRIPTION INITIATION FACTOR IIF ALPHA SUBUNIT (TFIIF-ALPHA) FAMILY PROTEIN |
AT1G67120 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0159
| Unknown | ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / TRANSCRIPTION FACTOR BINDING |
AT4G35800 | Predictedtwo hybridtwo hybridSynthetic LethalitySynthetic LethalityReconstituted ComplexReconstituted Complexin vitroin vitrofar western blottingbiochemicalAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinterologs mappinginteraction prediction | FSW = 0.1293
| Unknown | NRPB1 (RNA POLYMERASE II LARGE SUBUNIT) DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
AT5G63110 | PredictedAffinity Capture-WesternSynthetic Rescueinterologs mapping | FSW = 0.0277
| Unknown | HDA6 (HISTONE DEACETYLASE 6) HISTONE DEACETYLASE |
AT3G10330 | Predictedinteraction prediction | FSW = 0.0549
| Unknown | TRANSCRIPTION INITIATION FACTOR IIB-2 / GENERAL TRANSCRIPTION FACTOR TFIIB-2 (TFIIB2) |
AT5G41580 | Predictedtwo hybrid | FSW = 0.0214
| Unknown | ZINC ION BINDING |
AT3G54610 | Predictedinterologs mapping | FSW = 0.0285
| Unknown | GCN5 DNA BINDING / H3 HISTONE ACETYLTRANSFERASE/ HISTONE ACETYLTRANSFERASE |
AT1G18040 | PredictedSynthetic Rescue | FSW = 0.0649
| Unknown | CDKD13 (CYCLIN-DEPENDENT KINASE D13) KINASE/ PROTEIN KINASE |
AT1G63810 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0067
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NRAP PROTEIN (INTERPROIPR005554) HAS 268 BLAST HITS TO 263 PROTEINS IN 124 SPECIES ARCHAE - 3 BACTERIA - 0 METAZOA - 116 FUNGI - 89 PLANTS - 17 VIRUSES - 0 OTHER EUKARYOTES - 43 (SOURCE NCBI BLINK) |
AT2G41630 | Predictedtwo hybrid | FSW = 0.0617
| Unknown | TFIIB (TRANSCRIPTION FACTOR II B) RNA POLYMERASE II TRANSCRIPTION FACTOR/ PROTEIN BINDING / TRANSCRIPTION REGULATOR/ TRANSLATION INITIATION FACTOR/ ZINC ION BINDING |
AT4G38130 | PredictedAffinity Capture-Westerninterologs mappingSynthetic Rescue | FSW = 0.0415
| Unknown | HD1 (HISTONE DEACETYLASE 1) BASAL TRANSCRIPTION REPRESSOR/ HISTONE DEACETYLASE/ PROTEIN BINDING |
AT2G15430 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0565
| Unknown | NRPB3 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION |
AT4G08350 | PredictedPhenotypic EnhancementAffinity Capture-MSSynthetic Lethalityinteraction prediction | FSW = 0.0947
| Unknown | GTA2 (GLOBAL TRANSCRIPTION FACTOR GROUP A2) STRUCTURAL CONSTITUENT OF RIBOSOME / TRANSCRIPTION ELONGATION REGULATOR/ TRANSCRIPTION FACTOR |
AT2G38560 | PredictedPhenotypic Enhancement | FSW = 0.1063
| Unknown | TFIIS (TRANSCRIPT ELONGATION FACTOR IIS) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION ELONGATION FACTOR/ TRANSCRIPTION FACTOR |
AT2G34210 | PredictedAffinity Capture-MS | FSW = 0.0929
| Unknown | STRUCTURAL CONSTITUENT OF RIBOSOME / TRANSCRIPTION ELONGATION REGULATOR/ TRANSCRIPTION INITIATION FACTOR |
AT1G70320 | PredictedAffinity Capture-MS | FSW = 0.0282
| Unknown | UPL2 (UBIQUITIN-PROTEIN LIGASE 2) UBIQUITIN-PROTEIN LIGASE |
AT1G55860 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0183
| Unknown | UPL1 (UBIQUITIN-PROTEIN LIGASE 1) UBIQUITIN-PROTEIN LIGASE |
AT4G21710 | PredictedAffinity Capture-MS | FSW = 0.1339
| Unknown | NRPB2 DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
AT3G14290 | Predictedinteraction prediction | FSW = 0.0141
| Unknown | PAE2 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT2G15400 | PredictedAffinity Capture-MS | FSW = 0.0847
| Unknown | NRPE3B DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION |
AT5G03730 | PredictedPhenotypic Enhancement | FSW = 0.0187
| Unknown | CTR1 (CONSTITUTIVE TRIPLE RESPONSE 1) KINASE/ PROTEIN BINDING / PROTEIN SERINE/THREONINE KINASE/ PROTEIN SERINE/THREONINE/TYROSINE KINASE |
AT1G02970 | Predictedin vitroin vitro | FSW = 0.0270
| Unknown | WEE1 (ARABIDOPSIS WEE1 KINASE HOMOLOG) KINASE/ PROTEIN KINASE |
AT2G20000 | Predictedin vitroAffinity Capture-MSin vitro | FSW = 0.0119
| Unknown | HBT (HOBBIT) BINDING |
AT3G16320 | Predictedin vitroin vitroAffinity Capture-MS | FSW = 0.0117
| Unknown | CDC27A BINDING |
AT5G06150 | Predictedin vitro | FSW = 0.0052
| Unknown | CYC1BAT CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT5G67380 | PredictedAffinity Capture-MSReconstituted ComplexAffinity Capture-Western | FSW = 0.0149
| Unknown | CKA1 (CASEIN KINASE ALPHA 1) KINASE |
AT3G13700 | Predictedtwo hybrid | FSW = 0.0122
| Unknown | RNA-BINDING PROTEIN PUTATIVE |
AT3G21215 | Predictedtwo hybrid | FSW = 0.0177
| Unknown | RNA-BINDING PROTEIN PUTATIVE |
AT3G52115 | Predictedtwo hybrid | FSW = 0.0180
| Unknown | ATGR1 (ARABIDOPSIS THALIANA GAMMA RESPONSE GENE 1) |
AT1G74310 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0159
| Unknown | ATHSP101 (ARABIDOPSIS THALIANA HEAT SHOCK PROTEIN 101) ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING |
AT2G15790 | Predictedinterologs mappingAffinity Capture-MSinteraction prediction | FSW = 0.0429
| Unknown | SQN (SQUINT) PEPTIDYL-PROLYL CIS-TRANS ISOMERASE |
AT5G58003 | Predictedinterologs mappinginterologs mapping | FSW = 0.1594
| Unknown | CPL4 (C-TERMINAL DOMAIN PHOSPHATASE-LIKE 4) PHOSPHOPROTEIN PHOSPHATASE |
AT5G63670 | PredictedPhenotypic Enhancement | FSW = 0.1088
| Unknown | SPT42 (SPT4 HOMOLOG 2) POSITIVE TRANSCRIPTION ELONGATION FACTOR/ ZINC ION BINDING |
AT3G19940 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0023
| Unknown | SUGAR TRANSPORTER PUTATIVE |
AT3G25230 | PredictedSynthetic Lethality | FSW = 0.0056
| Unknown | ROF1 (ROTAMASE FKBP 1) FK506 BINDING / CALMODULIN BINDING / PEPTIDYL-PROLYL CIS-TRANS ISOMERASE |
AT5G10270 | PredictedPhenotypic SuppressionPhenotypic EnhancementDosage Growth Defect | FSW = 0.0484
| Unknown | CDKC1 (CYCLIN-DEPENDENT KINASE C1) KINASE |
AT5G46180 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0112
| Unknown | DELTA-OAT ORNITHINE-OXO-ACID TRANSAMINASE |
AT5G63610 | PredictedSynthetic Rescue | FSW = 0.0772
| Unknown | CDKE1 (CYCLIN-DEPENDENT KINASE E1) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT1G20320 | Predictedinterologs mappinginterologs mapping | FSW = 0.1265
| Unknown | NLI INTERACTING FACTOR (NIF) FAMILY PROTEIN |
AT5G25380 | Predictedin vitro | FSW = 0.0725
| Unknown | CYCA21 (CYCLIN A21) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT1G77460 | Predictedin vitroin vivo | FSW = 0.0255
| Unknown | BINDING |
AT2G35940 | Predictedtwo hybrid | FSW = 0.0148
| Unknown | BLH1 (BEL1-LIKE HOMEODOMAIN 1) DNA BINDING / PROTEIN HETERODIMERIZATION/ PROTEIN HOMODIMERIZATION/ TRANSCRIPTION FACTOR |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454