Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G18290 - ( anaphase-promoting complex subunit 10 family / APC10 family )
34 Proteins interacs with AT2G18290Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT4G17615 | Experimental | FSW = 0.0144
| Unknown | CBL1 (CALCINEURIN B-LIKE PROTEIN 1) CALCIUM ION BINDING |
AT2G20000 | Experimental | FSW = 0.1507
| Unknown | HBT (HOBBIT) BINDING |
AT2G04660 | Experimentalinteraction detection methodtwo hybrid | FSW = 0.1416
| Unknown | APC2 UBIQUITIN PROTEIN LIGASE BINDING / UBIQUITIN-PROTEIN LIGASE |
AT1G49240 | PredictedAffinity Capture-MS | FSW = 0.0208
| Unknown | ACT8 (ACTIN 8) COPPER ION BINDING / STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT3G48750 | PredictedSynthetic Lethality | FSW = 0.0450
| Unknown | CDC2 (CELL DIVISION CONTROL 2) CYCLIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN BINDING / PROTEIN KINASE |
AT3G12110 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0185
| Unknown | ACT11 (ACTIN-11) STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT1G05570 | Predictedinteraction prediction | FSW = 0.0271
| Unknown | CALS1 (CALLOSE SYNTHASE 1) 13-BETA-GLUCAN SYNTHASE/ TRANSFERASE TRANSFERRING GLYCOSYL GROUPS |
AT2G25880 | Predictedinterologs mapping | FSW = 0.0833
| Unknown | ATAUR2 (ATAURORA2) HISTONE KINASE(H3-S10 SPECIFIC) / KINASE |
AT2G45490 | Predictedinterologs mapping | FSW = 0.0650
| Unknown | ATAUR3 (ATAURORA3) ATP BINDING / HISTONE KINASE(H3-S10 SPECIFIC) / PROTEIN KINASE |
AT1G56170 | Predictedtwo hybrid | FSW = 0.0431
| Unknown | NF-YC2 (NUCLEAR FACTOR Y SUBUNIT C2) DNA BINDING / TRANSCRIPTION ACTIVATOR/ TRANSCRIPTION FACTOR |
AT4G29510 | Predictedtwo hybrid | FSW = 0.0256
| Unknown | PRMT11 (ARGININE METHYLTRANSFERASE 11) PROTEIN-ARGININE N-METHYLTRANSFERASE |
AT5G67270 | PredictedSynthetic Lethality | FSW = 0.0729
| Unknown | ATEB1C (MICROTUBULE END BINDING PROTEIN 1) MICROTUBULE BINDING |
AT1G65470 | Predictedsynthetic growth defect | FSW = 0.0718
| Unknown | FAS1 (FASCIATA 1) HISTONE BINDING |
AT3G47690 | PredictedSynthetic Lethality | FSW = 0.0647
| Unknown | ATEB1A MICROTUBULE BINDING |
AT5G63960 | PredictedSynthetic Lethality | FSW = 0.0423
| Unknown | EMB2780 (EMBRYO DEFECTIVE 2780) DNA BINDING / DNA-DIRECTED DNA POLYMERASE/ NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
AT5G55130 | Predictedtwo hybridtwo hybrid | FSW = 0.0410
| Unknown | CNX5 (CO-FACTOR FOR NITRATE REDUCTASE AND XANTHINE DEHYDROGENASE 5) MO-MOLYBDOPTERIN COFACTOR SULFURASE |
AT1G06590 | Predictedin vivo | FSW = 0.2832
| Unknown | UNKNOWN PROTEIN |
AT3G16320 | PredictedAffinity Capture-Western | FSW = 0.1609
| Unknown | CDC27A BINDING |
AT4G21530 | PredictedAffinity Capture-Western | FSW = 0.2945
| Unknown | NUCLEOTIDE BINDING |
AT1G78770 | Predictedinteraction predictionAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.0645
| Unknown | CELL DIVISION CYCLE FAMILY PROTEIN |
AT1G52740 | Predictedsynthetic growth defect | FSW = 0.0478
| Unknown | HTA9 (HISTONE H2A PROTEIN 9) DNA BINDING |
AT2G13680 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.0179
| Unknown | CALS5 (CALLOSE SYNTHASE 5) 13-BETA-GLUCAN SYNTHASE |
AT3G02820 | PredictedSynthetic Lethality | FSW = 0.0607
| Unknown | ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN |
AT3G05870 | PredictedAffinity Capture-MSinterologs mappinginteraction prediction | FSW = 0.2375
| Unknown | APC11 PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE/ ZINC ION BINDING |
AT3G42660 | Predictedsynthetic growth defect | FSW = 0.0597
| Unknown | NUCLEOTIDE BINDING |
AT5G26680 | PredictedSynthetic LethalitySynthetic Lethalityinteraction prediction | FSW = 0.0598
| Unknown | ENDONUCLEASE PUTATIVE |
AT5G55090 | PredictedSynthetic Lethality | FSW = 0.0160
| Unknown | MAPKKK15 ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT2G39840 | PredictedSynthetic Lethality | FSW = 0.0344
| Unknown | TOPP4 PROTEIN SERINE/THREONINE PHOSPHATASE |
AT3G48150 | Predictedinteraction predictionAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MStwo hybridinterologs mapping | FSW = 0.1616
| Unknown | APC8 (ANAPHASE-PROMOTING COMPLEX SUBUNIT 8) BINDING |
AT5G41700 | PredictedSynthetic Lethality | FSW = 0.0247
| Unknown | UBC8 (UBIQUITIN CONJUGATING ENZYME 8) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT5G48640 | Predictedtwo hybrid | FSW = 0.0397
| Unknown | CYCLIN FAMILY PROTEIN |
AT5G51940 | Predictedtwo hybrid | FSW = 0.0094
| Unknown | NRPB6A DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
AT2G29400 | PredictedSynthetic Lethality | FSW = 0.0225
| Unknown | TOPP1 (TYPE ONE PROTEIN PHOSPHATASE 1) PROTEIN SERINE/THREONINE PHOSPHATASE |
AT4G24480 | Predictedtwo hybrid | FSW = 0.0239
| Unknown | SERINE/THREONINE PROTEIN KINASE PUTATIVE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454