Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G18390 - ( TTN5 (TITAN 5) GTP binding / GTPase )
16 Proteins interacs with AT2G18390Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G08580 | Predictedin vivoin vitro | FSW = 0.0312
| Unknown | AAC1 (ADP/ATP CARRIER 1) ATPADP ANTIPORTER/ BINDING |
AT3G49870 | PredictedPhylogenetic profile method | FSW = 0.6400
| Unknown | ATARLA1C (ADP-RIBOSYLATION FACTOR-LIKE A1C) GTP BINDING |
AT5G67560 | PredictedPhylogenetic profile method | FSW = 0.3267
| Unknown | ATARLA1D (ADP-RIBOSYLATION FACTOR-LIKE A1D) GTP BINDING |
AT2G24765 | PredictedPhylogenetic profile method | FSW = 0.3303
| Unknown | ARF3 (ADP-RIBOSYLATION FACTOR 3) PROTEIN BINDING |
AT2G42500 | PredictedCo-purification | FSW = 0.0346
| Unknown | PP2A-4 HYDROLASE/ PROTEIN SERINE/THREONINE PHOSPHATASE |
AT1G24180 | Predictedtwo hybridtwo hybrid | FSW = 0.0351
| Unknown | IAR4 OXIDOREDUCTASE ACTING ON THE ALDEHYDE OR OXO GROUP OF DONORS DISULFIDE AS ACCEPTOR / PYRUVATE DEHYDROGENASE (ACETYL-TRANSFERRING) |
AT3G55750 | Predictedtwo hybrid | FSW = 0.1062
| Unknown | 60S RIBOSOMAL PROTEIN L35A (RPL35AD) |
AT1G69960 | PredictedCo-purification | FSW = 0.1385
| Unknown | PP2A (SERINE/THREONINE PROTEIN PHOSPHATASE 2A) PROTEIN SERINE/THREONINE PHOSPHATASE |
AT1G07070 | Predictedtwo hybridtwo hybrid | FSW = 0.0900
| Unknown | 60S RIBOSOMAL PROTEIN L35A (RPL35AA) |
AT4G15930 | Predictedtwo hybrid | FSW = 0.0114
| Unknown | MICROTUBULE MOTOR |
AT3G09880 | PredictedCo-purification | FSW = 0.0529
| Unknown | ATB BETA PROTEIN PHOSPHATASE TYPE 2A REGULATOR |
AT3G60740 | Predictedin vivoin vitroCo-purificationinterologs mapping | FSW = 0.1015
| Unknown | TTN1 (TITAN 1) TUBULIN BINDING |
AT5G37680 | PredictedPhylogenetic profile method | FSW = 0.3793
| Unknown | ATARLA1A (ADP-RIBOSYLATION FACTOR-LIKE A1A) GTP BINDING |
AT5G52210 | PredictedPhylogenetic profile method | FSW = 0.0985
| Unknown | ATGB1 (ARABIDOPSIS THALIANA GTP-BINDING PROTEIN 1) GTP BINDING |
AT1G02430 | PredictedPhylogenetic profile method | FSW = 0.3267
| Unknown | ATARFD1B (ADP-RIBOSYLATION FACTOR D1B) GTP BINDING |
AT3G49860 | PredictedPhylogenetic profile method | FSW = 0.3938
| Unknown | ATARLA1B (ADP-RIBOSYLATION FACTOR-LIKE A1B) GTP BINDING |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454