Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Find locus: show subcellular location show Ontology

Export PPI as  



AtPIN will be upgraded. Please send your suggestions here

AT2G18390 - ( TTN5 (TITAN 5) GTP binding / GTPase )

16 Proteins interacs with AT2G18390
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT3G08580

Predicted

in vivo

in vitro

FSW = 0.0312

Unknown

AAC1 (ADP/ATP CARRIER 1) ATPADP ANTIPORTER/ BINDING
AT3G49870

Predicted

Phylogenetic profile method

FSW = 0.6400

Unknown

ATARLA1C (ADP-RIBOSYLATION FACTOR-LIKE A1C) GTP BINDING
AT5G67560

Predicted

Phylogenetic profile method

FSW = 0.3267

Unknown

ATARLA1D (ADP-RIBOSYLATION FACTOR-LIKE A1D) GTP BINDING
AT2G24765

Predicted

Phylogenetic profile method

FSW = 0.3303

Unknown

ARF3 (ADP-RIBOSYLATION FACTOR 3) PROTEIN BINDING
AT2G42500

Predicted

Co-purification

FSW = 0.0346

Unknown

PP2A-4 HYDROLASE/ PROTEIN SERINE/THREONINE PHOSPHATASE
AT1G24180

Predicted

two hybrid

two hybrid

FSW = 0.0351

Unknown

IAR4 OXIDOREDUCTASE ACTING ON THE ALDEHYDE OR OXO GROUP OF DONORS DISULFIDE AS ACCEPTOR / PYRUVATE DEHYDROGENASE (ACETYL-TRANSFERRING)
AT3G55750

Predicted

two hybrid

FSW = 0.1062

Unknown

60S RIBOSOMAL PROTEIN L35A (RPL35AD)
AT1G69960

Predicted

Co-purification

FSW = 0.1385

Unknown

PP2A (SERINE/THREONINE PROTEIN PHOSPHATASE 2A) PROTEIN SERINE/THREONINE PHOSPHATASE
AT1G07070

Predicted

two hybrid

two hybrid

FSW = 0.0900

Unknown

60S RIBOSOMAL PROTEIN L35A (RPL35AA)
AT4G15930

Predicted

two hybrid

FSW = 0.0114

Unknown

MICROTUBULE MOTOR
AT3G09880

Predicted

Co-purification

FSW = 0.0529

Unknown

ATB BETA PROTEIN PHOSPHATASE TYPE 2A REGULATOR
AT3G60740

Predicted

in vivo

in vitro

Co-purification

interologs mapping

FSW = 0.1015

Unknown

TTN1 (TITAN 1) TUBULIN BINDING
AT5G37680

Predicted

Phylogenetic profile method

FSW = 0.3793

Unknown

ATARLA1A (ADP-RIBOSYLATION FACTOR-LIKE A1A) GTP BINDING
AT5G52210

Predicted

Phylogenetic profile method

FSW = 0.0985

Unknown

ATGB1 (ARABIDOPSIS THALIANA GTP-BINDING PROTEIN 1) GTP BINDING
AT1G02430

Predicted

Phylogenetic profile method

FSW = 0.3267

Unknown

ATARFD1B (ADP-RIBOSYLATION FACTOR D1B) GTP BINDING
AT3G49860

Predicted

Phylogenetic profile method

FSW = 0.3938

Unknown

ATARLA1B (ADP-RIBOSYLATION FACTOR-LIKE A1B) GTP BINDING

Downloads

Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

Learn more

How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454