Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G18770 - ( signal recognition particle binding )

15 Proteins interacs with AT2G18770
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT1G76490

Predicted

two hybrid

interaction prediction

FSW = 0.1231

Unknown

HMG1 (HYDROXY METHYLGLUTARYL COA REDUCTASE 1) HYDROXYMETHYLGLUTARYL-COA REDUCTASE
AT1G07420

Predicted

two hybrid

interaction prediction

FSW = 0.1934

Unknown

SMO2-1 (STEROL 4-ALPHA-METHYL-OXIDASE 2-1) 4-ALPHA-METHYL-DELTA7-STEROL-4ALPHA-METHYL OXIDASE/ C-4 METHYLSTEROL OXIDASE
AT1G29310

Predicted

two hybrid

FSW = 0.0824

Unknown

P-P-BOND-HYDROLYSIS-DRIVEN PROTEIN TRANSMEMBRANE TRANSPORTER
AT3G51460

Predicted

two hybrid

interaction prediction

FSW = 0.0898

Unknown

RHD4 (ROOT HAIR DEFECTIVE4) PHOSPHATIDYLINOSITOL-45-BISPHOSPHATE 5-PHOSPHATASE/ PHOSPHATIDYLINOSITOL-4-PHOSPHATE PHOSPHATASE
AT3G55360

Predicted

two hybrid

interaction prediction

FSW = 0.1190

Unknown

CER10 3-OXO-5-ALPHA-STEROID 4-DEHYDROGENASE/ FATTY ACID ELONGASE/ TRANS-2-ENOYL-COA REDUCTASE (NADPH)
AT5G05670

Predicted

Gene fusion method

Phylogenetic profile method

Co-expression

FSW = 0.5602

Unknown

SIGNAL RECOGNITION PARTICLE BINDING
AT4G30600

Predicted

Affinity Capture-Western

Affinity Capture-MS

interologs mapping

interaction prediction

FSW = 0.1062

Unknown

SIGNAL RECOGNITION PARTICLE RECEPTOR ALPHA SUBUNIT FAMILY PROTEIN
AT4G39830

Predicted

two hybrid

interaction prediction

FSW = 0.0842

Unknown

L-ASCORBATE OXIDASE PUTATIVE
AT2G34980

Predicted

two hybrid

interaction prediction

FSW = 0.1543

Unknown

SETH1 PHOSPHATIDYLINOSITOL N-ACETYLGLUCOSAMINYLTRANSFERASE/ TRANSFERASE
AT2G22425

Predicted

two hybrid

FSW = 0.1423

Unknown

PEPTIDASE
AT1G14290

Predicted

two hybrid

FSW = 0.2582

Unknown

SBH2 (SPHINGOID BASE HYDROXYLASE 2) CATALYTIC/ SPHINGOSINE HYDROXYLASE
AT1G08750

Predicted

two hybrid

interaction prediction

FSW = 0.1934

Unknown

GPI-ANCHOR TRANSAMIDASE PUTATIVE
AT4G40042

Predicted

interaction prediction

FSW = 0.2165

Unknown

PEPTIDASE
AT1G69640

Predicted

interaction prediction

FSW = 0.2243

Unknown

SBH1 (SPHINGOID BASE HYDROXYLASE 1) CATALYTIC/ SPHINGOSINE HYDROXYLASE
AT1G78720

Predicted

interaction prediction

FSW = 0.1103

Unknown

PROTEIN TRANSPORT PROTEIN SEC61 PUTATIVE

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454