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AT2G18790 - ( PHYB (PHYTOCHROME B) G-protein coupled photoreceptor/ protein histidine kinase/ red or far-red light photoreceptor/ signal transducer )

29 Proteins interacs with AT2G18790

Locus	Method	FSW	Cellular Compartment Classification (C3)	Description
AT1G75950	Experimental	FSW = 0.0091	Class A: nucleus cytosol Class B: plasma membrane Class D: cytosol (p = 0.67)	SKP1 (S PHASE KINASE-ASSOCIATED PROTEIN 1) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT1G09570	Experimental Phenotypic Enhancement Phenotypic Enhancement Phenotypic Suppression synthetic growth defect	FSW = 0.4949	Class A: nucleus cytosol Class D: plastid (p = 0.78) cytosol (p = 0.67)	PHYA (PHYTOCHROME A) G-PROTEIN COUPLED PHOTORECEPTOR/ PROTEIN HISTIDINE KINASE/ RED OR FAR-RED LIGHT PHOTORECEPTOR/ SIGNAL TRANSDUCER
AT5G57360	Experimental two hybrid two hybrid Reconstituted Complex in vitro	FSW = 0.0607	Class A: nucleus cytosol Class D: nucleus (p = 0.78) cytosol (p = 0.67)	ZTL (ZEITLUPE) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT2G32950	Experimental two hybrid two hybrid coimmunoprecipitation	FSW = 0.0963	Class A: nucleus cytosol Class D: nucleus (p = 0.78)	COP1 (CONSTITUTIVE PHOTOMORPHOGENIC 1) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT5G63310	Experimental Reconstituted Complex Affinity Capture-Western in vitro	FSW = 0.0352	Class A: nucleus Class B: unclear plastid cytosol Class D: plastid (p = 0.78) cytosol (p = 0.67)	NDPK2 (NUCLEOSIDE DIPHOSPHATE KINASE 2) ATP BINDING / NUCLEOSIDE DIPHOSPHATE KINASE/ PROTEIN BINDING
AT5G35840	Experimental molecular sieving Affinity Capture-Western coimmunoprecipitation affinity technology	FSW = 0.2353	Class A: nucleus Class B: cytosol Class D: plastid (p = 0.78) nucleus (p = 0.78) cytosol (p = 0.67)	PHYC (PHYTOCHROME DEFECTIVE C) PROTEIN HISTIDINE KINASE
AT5G49230	Experimental Phenotypic Suppression	FSW = 0.0969	Class A: nucleus Class B: cytosol Class D: plastid (p = 0.78) nucleus (p = 0.78)	HRB1 (HYPERSENSITIVE TO RED AND BLUE) PROTEIN BINDING
AT4G17230	Experimental synthetic growth defect	FSW = 0.0256	Class A: nucleus Class B: cytosol Class D: plastid (p = 0.78) cytosol (p = 0.67)	SCL13 (SCARECROW-LIKE 13) TRANSCRIPTION FACTOR
AT4G16250	Experimental affinity technology Affinity Capture-Western molecular sieving Affinity Capture-Western coimmunoprecipitation	FSW = 0.1328	Class A: nucleus Class B: cytosol Class D: plastid (p = 0.78) cytosol (p = 0.67)	PHYD (PHYTOCHROME DEFECTIVE D) G-PROTEIN COUPLED PHOTORECEPTOR/ RED OR FAR-RED LIGHT PHOTORECEPTOR/ SIGNAL TRANSDUCER
AT4G18130	Experimental molecular sieving Affinity Capture-Western affinity technology coimmunoprecipitation	FSW = 0.1558	Class A: nucleus Class B: cytosol Class D: plastid (p = 0.78) cytosol (p = 0.67)	PHYE (PHYTOCHROME DEFECTIVE E) G-PROTEIN COUPLED PHOTORECEPTOR/ PROTEIN HISTIDINE KINASE/ SIGNAL TRANSDUCER
AT1G09530	Experimental in vitro in vitro two hybrid two hybrid in vitro two hybrid in vitro in vitro in vitro two hybrid in vitro Reconstituted Complex Reconstituted Complex Reconstituted Complex Reconstituted Complex Reconstituted Complex Reconstituted Complex Reconstituted Complex Reconstituted Complex pull down interaction detection method pull down pull down pull down pull down interaction detection method two hybrid Phenotypic Suppression Affinity Capture-Western two hybrid	FSW = 0.3125	Class A: nucleus Class B: cytosol Class D: nucleus (p = 0.78)	PIF3 (PHYTOCHROME INTERACTING FACTOR 3) DNA BINDING / PROTEIN BINDING / TRANSCRIPTION FACTOR/ TRANSCRIPTION REGULATOR
AT1G02340	Experimental	FSW = 0.2408	Class A: nucleus Class B: cytosol Class D: nucleus (p = 0.78)	HFR1 (LONG HYPOCOTYL IN FAR-RED) DNA BINDING / PROTEIN BINDING / TRANSCRIPTION FACTOR
AT1G43700	Experimental	FSW = 0.0250	Class A: nucleus Class B: cytosol Class D: nucleus (p = 0.78)	VIP1 (VIRE2-INTERACTING PROTEIN 1) PROTEIN BINDING / TRANSCRIPTION FACTOR
AT2G20180	Experimental Reconstituted Complex pull down coimmunoprecipitation in vitro	FSW = 0.0611	Class A: nucleus Class B: cytosol Class D: nucleus (p = 0.78)	PIL5 (PHYTOCHROME INTERACTING FACTOR 3-LIKE 5) DNA BINDING / PHYTOCHROME BINDING / TRANSCRIPTION FACTOR
AT1G04400	Experimental Affinity Capture-Western fluorescence acceptor donor pair coimmunoprecipitation affinity technology	FSW = 0.1448	Class A: nucleus Class B: cytosol Class D: cytosol (p = 0.67)	CRY2 (CRYPTOCHROME 2) BLUE LIGHT PHOTORECEPTOR/ PROTEIN HOMODIMERIZATION
AT2G02950	Experimental two hybrid pull down Phenotypic Suppression two hybrid Reconstituted Complex in vitro	FSW = 0.0992	Class A: cytosol Class B: nucleus Class D: plastid (p = 0.78) nucleus (p = 0.78)	PKS1 (PHYTOCHROME KINASE SUBSTRATE 1) PROTEIN BINDING
AT3G19980	Experimental in vitro	FSW = 0.0069	Class B: unclear nucleus cytosol Class D: cytosol (p = 0.67)	ATFYPP3 (FLOWER-SPECIFIC PHYTOCHROME-ASSOCIATED PROTEIN PHOSPHATASE 3) PROTEIN BINDING / PROTEIN SERINE/THREONINE KINASE/ PROTEIN SERINE/THREONINE PHOSPHATASE
AT1G22280	Experimental Reconstituted Complex in vitro	FSW = 0.0552	Class B: plasma membrane nucleus cytosol Class D: plastid (p = 0.78) nucleus (p = 0.78)	PROTEIN PHOSPHATASE 2C PUTATIVE / PP2C PUTATIVE
AT5G02810	Experimental Phenotypic Suppression	FSW = 0.0994	Class B: nucleus mitochondrion cytosol Class D: nucleus (p = 0.78)	PRR7 (PSEUDO-RESPONSE REGULATOR 7) TRANSCRIPTION REGULATOR/ TWO-COMPONENT RESPONSE REGULATOR
AT1G04240	Experimental pull down Reconstituted Complex in vitro	FSW = 0.0298	Class D: plastid (p = 0.78) nucleus (p = 0.78)	SHY2 (SHORT HYPOCOTYL 2) TRANSCRIPTION FACTOR
AT5G59560	Experimental Phenotypic Enhancement	FSW = 0.0256	Class D: nucleus (p = 0.78)	SRR1 (SENSITIVITY TO RED LIGHT REDUCED 1)
AT1G10470	Experimental two hybrid affinity technology Affinity Capture-Western Reconstituted Complex coimmunoprecipitation in vitro	FSW = 0.0357	Class D: nucleus (p = 0.78)	ARR4 (RESPONSE REGULATOR 4) PROTEIN BINDING / TRANSCRIPTION REGULATOR/ TWO-COMPONENT RESPONSE REGULATOR
AT2G25930	Experimental two hybrid Phenotypic Enhancement Reconstituted Complex interologs mapping in vitro two hybrid	FSW = 0.1587	Class D: nucleus (p = 0.78)	ELF3 (EARLY FLOWERING 3) PROTEIN C-TERMINUS BINDING / TRANSCRIPTION FACTOR
AT2G43010	Experimental in vitro Reconstituted Complex Reconstituted Complex Reconstituted Complex in vitro coimmunoprecipitation	FSW = 0.3062	Class D: nucleus (p = 0.78)	PIF4 (PHYTOCHROME INTERACTING FACTOR 4) DNA BINDING / PROTEIN BINDING / TRANSCRIPTION FACTOR
AT2G42810	Experimental two hybrid	FSW = 0.0496	Class D: cytosol (p = 0.67)	PP52 (PROTEIN PHOSPHATASE 52) PHOSPHOPROTEIN PHOSPHATASE/ PROTEIN BINDING / PROTEIN SERINE/THREONINE PHOSPHATASE
AT3G59060	Experimental in vitro Reconstituted Complex Phenotypic Suppression Phenotypic Suppression biochemical Reconstituted Complex two hybrid two hybrid coimmunoprecipitation	FSW = 0.1947	Unknown	PIL6 (PHYTOCHROME INTERACTING FACTOR 3-LIKE 6) DNA BINDING / TRANSCRIPTION FACTOR
AT3G62090	Experimental coimmunoprecipitation	FSW = 0.0275	Unknown	PIL2 (PHYTOCHROME INTERACTING FACTOR 3-LIKE 2) PROTEIN BINDING / TRANSCRIPTION FACTOR
AT5G61270	Experimental interaction detection method Reconstituted Complex coimmunoprecipitation in vitro	FSW = 0.0923	Unknown	PIF7 (PHYTOCHROME-INTERACTING FACTOR7) DNA BINDING / DOUBLE-STRANDED DNA BINDING / TRANSCRIPTION FACTOR
AT1G76500	Experimental Phenotypic Suppression	FSW = 0.1000	Unknown	SOB3 (SUPPRESSOR OF PHYB-4#3) DNA BINDING

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from

Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment

Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment

Class C: Same as Class A but the PPI is predicted

Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB

Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

Welcome to AtPIN

AtPIN will be upgraded. Please send your suggestions here

AT2G18790 - ( PHYB (PHYTOCHROME B) G-protein coupled photoreceptor/ protein histidine kinase/ red or far-red light photoreceptor/ signal transducer )

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Fasta sequences:

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