Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G18915 - ( LKP2 (LOV KELCH PROTEIN 2) protein binding / ubiquitin-protein ligase )
31 Proteins interacs with AT2G18915| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
AT5G57360
   | Experimentaltwo hybrid | FSW = 0.3756
| Class A:nucleuscytosolClass D:nucleus (p = 0.78)cytosol (p = 0.67) | ZTL (ZEITLUPE) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
| AT1G56280
| Experimentaltwo hybrid | FSW = 0.1481
| Class A:nucleusClass B:peroxisomecytosolClass D:nucleus (p = 0.78) | ATDI19 |
| AT2G24790
| Experimentaltwo hybrid | FSW = 0.1469
| Class A:nucleusClass B:cytosolClass D:nucleus (p = 0.78) | COL3 (CONSTANS-LIKE 3) PROTEIN BINDING / TRANSCRIPTION FACTOR/ ZINC ION BINDING |
| AT5G15850
| Experimentaltwo hybrid | FSW = 0.0889
| Class A:nucleusClass B:cytosolClass D:nucleus (p = 0.78) | COL1 (CONSTANS-LIKE 1) TRANSCRIPTION FACTOR/ ZINC ION BINDING |
| AT1G22770
| Experimentalpull downReconstituted Complextwo hybridin vitro | FSW = 0.2094
| Class A:nucleusClass B:cytosolClass D:nucleus (p = 0.78) | GI (GIGANTEA) |
| AT5G15840
| Experimentaltwo hybrid | FSW = 0.0312
| Class A:nucleusClass B:cytosolClass D:nucleus (p = 0.78) | CO (CONSTANS) TRANSCRIPTION FACTOR/ TRANSCRIPTION REGULATOR/ ZINC ION BINDING |
| AT5G61380
| Experimentaltwo hybridtwo hybridReconstituted Complex | FSW = 0.1184
| Class A:nucleusClass B:cytosolClass D:nucleus (p = 0.78) | TOC1 (TIMING OF CAB EXPRESSION 1) TRANSCRIPTION REGULATOR/ TWO-COMPONENT RESPONSE REGULATOR |
| AT1G20140
| Experimentaltwo hybrid | FSW = 0.1323
| Class A:nucleusClass B:cytosolClass D:cytosol (p = 0.67) | ASK4 (ARABIDOPSIS SKP1-LIKE 4) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
| AT3G60020
| Experimentaltwo hybrid | FSW = 0.2634
| Class A:nucleusClass B:cytosolClass D:cytosol (p = 0.67) | ASK5 (ARABIDOPSIS SKP1-LIKE 5) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
| AT2G33500
| Experimentaltwo hybrid | FSW = 0.1469
| Class B:plasma membranenucleuscytosolClass D:nucleus (p = 0.78) | ZINC FINGER (B-BOX TYPE) FAMILY PROTEIN |
| AT5G24470
| Experimentaltwo hybridtwo hybridReconstituted Complex | FSW = 0.1465
| Class D:nucleus (p = 0.78) | APRR5 (ARABIDOPSIS PSEUDO-RESPONSE REGULATOR 5) TRANSCRIPTION REGULATOR/ TWO-COMPONENT RESPONSE REGULATOR |
| AT5G62430
| Experimentalpull downtwo hybridReconstituted Complex | FSW = 0.0861
| Class D:nucleus (p = 0.78) | CDF1 (CYCLING DOF FACTOR 1) DNA BINDING / PROTEIN BINDING / TRANSCRIPTION FACTOR |
| AT5G24930
| Experimentaltwo hybrid | FSW = 0.1469
| Class D:nucleus (p = 0.78) | ZINC FINGER (B-BOX TYPE) FAMILY PROTEIN |
| AT3G02380
| Experimentaltwo hybrid | FSW = 0.1714
| Class D:nucleus (p = 0.78) | COL2 (CONSTANS-LIKE 2) TRANSCRIPTION FACTOR/ ZINC ION BINDING |
| AT1G68520
| Experimentaltwo hybrid | FSW = 0.0245
| Class D:nucleus (p = 0.78) | ZINC FINGER (B-BOX TYPE) FAMILY PROTEIN |
| AT5G39660
| Experimentalpull downtwo hybridReconstituted Complex | FSW = 0.0515
| Class D:nucleus (p = 0.78) | CDF2 (CYCLING DOF FACTOR 2) DNA BINDING / PROTEIN BINDING / TRANSCRIPTION FACTOR |
| AT3G47500
| Experimentalpull downtwo hybridReconstituted Complex | FSW = 0.0515
| Class D:nucleus (p = 0.78) | CDF3 (CYCLING DOF FACTOR 3) DNA BINDING / PROTEIN BINDING / TRANSCRIPTION FACTOR |
| AT2G47890
| Experimentaltwo hybrid | FSW = 0.1176
| Class D:nucleus (p = 0.78) | ZINC FINGER (B-BOX TYPE) FAMILY PROTEIN |
| AT1G28050
| Experimentaltwo hybrid | FSW = 0.0605
| Class D:nucleus (p = 0.78) | ZINC FINGER (B-BOX TYPE) FAMILY PROTEIN |
| AT5G57660
| Experimentaltwo hybrid | FSW = 0.0515
| Unknown | ZINC FINGER (B-BOX TYPE) FAMILY PROTEIN |
| AT1G10940
| Experimentaltwo hybrid | FSW = 0.0456
| Unknown | SNRK24 (SNF1-RELATED PROTEIN KINASE 24) KINASE |
| AT5G42190
| Experimentaltwo hybrid | FSW = 0.0586
| Unknown | ASK2 (ARABIDOPSIS SKP1-LIKE 2) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
| AT4G34210
| Experimentaltwo hybrid | FSW = 0.1787
| Unknown | ASK11 (ARABIDOPSIS SKP1-LIKE 11) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
| AT2G03170
| Experimentaltwo hybrid | FSW = 0.2447
| Unknown | ASK14 (ARABIDOPSIS SKP1-LIKE 14) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
| AT2G25700
| Experimentaltwo hybrid | FSW = 0.2558
| Unknown | ASK3 (ARABIDOPSIS SKP1-LIKE 3) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
| AT3G60010
| Experimental | FSW = 0.1867
| Unknown | ASK13 (ARABIDOPSIS SKP1-LIKE 13) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
| AT2G45950
| Experimentaltwo hybrid | FSW = 0.0245
| Unknown | ASK20 (ARABIDOPSIS SKP1-LIKE 20) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
| AT1G68050
| Experimentaltwo hybrid | FSW = 0.6095
| Unknown | FKF1 (FLAVIN-BINDING KELCH REPEAT F BOX 1) SIGNAL TRANSDUCER/ TWO-COMPONENT SENSOR/ UBIQUITIN-PROTEIN LIGASE |
| AT1G75950
| Predictedtwo hybridEnriched domain pairCo-expression | FSW = 0.0879
| Class C:nucleuscytosol | SKP1 (S PHASE KINASE-ASSOCIATED PROTEIN 1) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
| AT3G04820
| Predictedtwo hybrid | FSW = 0.0205
| Unknown | PSEUDOURIDINE SYNTHASE |
| AT2G24600
| PredictedGene fusion method | FSW = 0.0314
| Unknown | ANKYRIN REPEAT FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
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