Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G19080 - ( metaxin-related )

12 Proteins interacs with AT2G19080
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT3G20000

Experimental

two hybrid

FSW = 0.1394

Class A:

unclear

mitochondrion

Class B:

vacuole

TOM40 P-P-BOND-HYDROLYSIS-DRIVEN PROTEIN TRANSMEMBRANE TRANSPORTER/ VOLTAGE-GATED ANION CHANNEL
AT5G09420

Experimental

FSW = 0.2208

Class A:

unclear

mitochondrion

Class B:

plastid

Class D:

cytosol (p = 0.67)

ATTOC64-V (ARABIDOPSIS THALIANA TRANSLOCON AT THE OUTER MEMBRANE OF CHLOROPLASTS 64-V) AMIDASE/ BINDING / CARBON-NITROGEN LIGASE WITH GLUTAMINE AS AMIDO-N-DONOR
AT5G40930

Experimental

FSW = 0.4274

Class A:

mitochondrion

Class B:

vacuole

unclear

TOM20-4 (TRANSLOCASE OF OUTER MEMBRANE 20-4) P-P-BOND-HYDROLYSIS-DRIVEN PROTEIN TRANSMEMBRANE TRANSPORTER
AT3G54660

Experimental

two hybrid

FSW = 0.1255

Class A:

mitochondrion

Class B:

unclear

plastid

Class D:

cytosol (p = 0.67)

GR (GLUTATHIONE REDUCTASE) ATP BINDING / GLUTATHIONE-DISULFIDE REDUCTASE
AT3G20740

Experimental

FSW = 0.0776

Class B:

unclear

nucleus

mitochondrion

Class D:

cytosol (p = 0.67)

FIE (FERTILIZATION-INDEPENDENT ENDOSPERM) NUCLEOTIDE BINDING / TRANSCRIPTION FACTOR/ TRANSCRIPTION REGULATOR
AT5G47930

Predicted

two hybrid

FSW = 0.0618

Unknown

40S RIBOSOMAL PROTEIN S27 (RPS27D)
AT3G19280

Predicted

two hybrid

FSW = 0.0426

Unknown

FUT11 (FUCOSYLTRANSFERASE 11) 4-GALACTOSYL-N-ACETYLGLUCOSAMINIDE 3-ALPHA-L-FUCOSYLTRANSFERASE/ FUCOSYLTRANSFERASE/ TRANSFERASE TRANSFERRING GLYCOSYL GROUPS
AT4G08320

Predicted

two hybrid

two hybrid

FSW = 0.0213

Unknown

TETRATRICOPEPTIDE REPEAT (TPR)-CONTAINING PROTEIN
AT3G10070

Predicted

two hybrid

FSW = 0.0247

Unknown

TAF12 (TBP-ASSOCIATED FACTOR 12) DNA BINDING / TRANSCRIPTION INITIATION FACTOR
AT4G34370

Predicted

two hybrid

FSW = 0.0274

Unknown

ARI1 (ARIADNE) PROTEIN BINDING / ZINC ION BINDING
AT4G02690

Predicted

Affinity Capture-MS

FSW = 0.1324

Unknown

GLUTAMATE BINDING
AT4G15470

Predicted

Affinity Capture-MS

FSW = 0.1170

Unknown

EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S UNCHARACTERISED PROTEIN FAMILY UPF0005 (INTERPROIPR006214) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS GLUTAMATE BINDING (TAIRAT1G030701) HAS 4000 BLAST HITS TO 3999 PROTEINS IN 955 SPECIES ARCHAE - 0 BACTERIA - 1775 METAZOA - 750 FUNGI - 92 PLANTS - 143 VIRUSES - 77 OTHER EUKARYOTES - 1163 (SOURCE NCBI BLINK)

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454