Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G19220 - ( unknown protein )
23 Proteins interacs with AT2G19220Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G76040 | PredictedAffinity Capture-MS | FSW = 0.0557
| Unknown | CPK29 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
AT1G64190 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2436
| Unknown | 6-PHOSPHOGLUCONATE DEHYDROGENASE FAMILY PROTEIN |
AT5G56350 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0734
| Unknown | PYRUVATE KINASE PUTATIVE |
AT5G41060 | PredictedAffinity Capture-MS | FSW = 0.0324
| Unknown | ZINC FINGER (DHHC TYPE) FAMILY PROTEIN |
AT1G04750 | PredictedPhenotypic Enhancement | FSW = 0.0671
| Unknown | VAMP721 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 721) |
AT4G21680 | PredictedPhenotypic Enhancement | FSW = 0.0500
| Unknown | PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN |
AT4G34430 | PredictedAffinity Capture-MS | FSW = 0.0314
| Unknown | CHB3 DNA BINDING / TRANSCRIPTION FACTOR/ ZINC ION BINDING |
AT1G06960 | PredictedAffinity Capture-Western | FSW = 0.0885
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN U2B PUTATIVE / SPLICEOSOMAL PROTEIN PUTATIVE |
AT1G07820 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3077
| Unknown | HISTONE H4 |
AT2G16740 | PredictedSynthetic Lethality | FSW = 0.0077
| Unknown | UBC29 (UBIQUITIN-CONJUGATING ENZYME 29) UBIQUITIN-PROTEIN LIGASE |
AT2G20290 | PredictedAffinity Capture-MS | FSW = 0.0545
| Unknown | XIG MOTOR/ PROTEIN BINDING |
AT3G01100 | PredictedAffinity Capture-MSAffinity Capture-MStwo hybridAffinity Capture-MSReconstituted Complexco-fractionationCo-fractionation | FSW = 0.4338
| Unknown | HYP1 (HYPOTHETICAL PROTEIN 1) |
AT3G22290 | PredictedAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MSReconstituted ComplexCo-purification | FSW = 0.0749
| Unknown | UNKNOWN PROTEIN |
AT5G01770 | PredictedReconstituted ComplexSynthetic Rescue | FSW = 0.1664
| Unknown | RAPTOR2 (RAPTOR2) BINDING / NUCLEOTIDE BINDING |
AT5G17860 | PredictedAffinity Capture-WesternAffinity Capture-WesternReconstituted ComplexAffinity Capture-MSReconstituted ComplexCo-purification | FSW = 0.2124
| Unknown | CAX7 (CALCIUM EXCHANGER 7) CALCIUMSODIUM ANTIPORTER/ CATIONCATION ANTIPORTER |
AT5G45620 | PredictedAffinity Capture-Western | FSW = 0.0916
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT PUTATIVE (RPN9) |
AT5G47080 | PredictedAffinity Capture-MSAffinity Capture-MSCo-purificationCo-purificationCo-purificationAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternReconstituted ComplexCo-purification | FSW = 0.2101
| Unknown | CKB1 PROTEIN KINASE REGULATOR |
AT5G49560 | PredictedPhenotypic Enhancement | FSW = 0.0430
| Unknown | UNKNOWN PROTEIN |
AT5G15750 | PredictedAffinity Capture-MS | FSW = 0.0140
| Unknown | RNA-BINDING S4 DOMAIN-CONTAINING PROTEIN |
AT5G44830 | PredictedPhenotypic Enhancement | FSW = 0.0708
| Unknown | GLYCOSIDE HYDROLASE FAMILY 28 PROTEIN / POLYGALACTURONASE (PECTINASE) FAMILY PROTEIN |
AT3G11310 | PredictedPhylogenetic profile method | FSW = 0.2222
| Unknown | UNKNOWN PROTEIN |
AT5G05800 | PredictedPhylogenetic profile method | FSW = 0.2222
| Unknown | UNKNOWN PROTEIN |
AT4G02210 | PredictedGene fusion method | FSW = 0.1538
| Unknown | UNKNOWN PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454