Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G19480 - ( NAP12 (NUCLEOSOME ASSEMBLY PROTEIN 12) DNA binding )
42 Proteins interacs with AT2G19480Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G19050 | Experimentaltwo hybrid | FSW = 0.0178
| Class B:plasma membranenucleusClass D:nucleus (p = 0.78) | ARR7 (RESPONSE REGULATOR 7) TRANSCRIPTION REGULATOR/ TWO-COMPONENT RESPONSE REGULATOR |
AT1G07660 | PredictedAffinity Capture-Western | FSW = 0.0590
| Class C:plasma membrane | HISTONE H4 |
AT3G04840 | PredictedAffinity Capture-MS | FSW = 0.0102
| Class C:plasma membrane | 40S RIBOSOMAL PROTEIN S3A (RPS3AA) |
AT1G20090 | PredictedSynthetic Rescue | FSW = 0.0302
| Class C:plasma membrane | ROP2 (RHO-RELATED PROTEIN FROM PLANTS 2) GTP BINDING |
AT1G06390 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.0091
| Class C:plasma membrane | GSK1 (GSK3/SHAGGY-LIKE PROTEIN KINASE 1) GLYCOGEN SYNTHASE KINASE 3/ KINASE |
AT3G01310 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0340
| Class C:plasma membrane | ACID PHOSPHATASE/ OXIDOREDUCTASE/ TRANSITION METAL ION BINDING |
AT4G37910 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0060
| Unknown | MTHSC70-1 (MITOCHONDRIAL HEAT SHOCK PROTEIN 70-1) ATP BINDING |
AT1G44170 | PredictedAffinity Capture-MS | FSW = 0.0217
| Unknown | ALDH3H1 (ALDEHYDE DEHYDROGENASE 3H1) 3-CHLOROALLYL ALDEHYDE DEHYDROGENASE/ ALDEHYDE DEHYDROGENASE (NAD) |
AT1G07790 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1110
| Unknown | HTB1 DNA BINDING |
AT1G18500 | PredictedAffinity Capture-MS | FSW = 0.0373
| Unknown | MAML-4 (METHYLTHIOALKYLMALATE SYNTHASE-LIKE 4) 2-ISOPROPYLMALATE SYNTHASE |
AT5G53480 | Predictedtwo hybrid | FSW = 0.0146
| Unknown | IMPORTIN BETA-2 PUTATIVE |
AT1G17590 | PredictedAffinity Capture-MS | FSW = 0.0326
| Unknown | NF-YA8 (NUCLEAR FACTOR Y SUBUNIT A8) TRANSCRIPTION FACTOR |
AT4G10670 | PredictedAffinity Capture-MS | FSW = 0.1161
| Unknown | GTC2 |
AT2G41630 | PredictedReconstituted Complex | FSW = 0.0267
| Unknown | TFIIB (TRANSCRIPTION FACTOR II B) RNA POLYMERASE II TRANSCRIPTION FACTOR/ PROTEIN BINDING / TRANSCRIPTION REGULATOR/ TRANSLATION INITIATION FACTOR/ ZINC ION BINDING |
AT2G24500 | PredictedAffinity Capture-MSAffinity Capture-MSPhenotypic Enhancement | FSW = 0.0085
| Unknown | FZF TRANSCRIPTION FACTOR |
AT1G55520 | PredictedAffinity Capture-MS | FSW = 0.0528
| Unknown | TBP2 (TATA BINDING PROTEIN 2) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ TATA-BINDING PROTEIN BINDING |
AT1G43700 | Predictedtwo hybrid | FSW = 0.0178
| Unknown | VIP1 (VIRE2-INTERACTING PROTEIN 1) PROTEIN BINDING / TRANSCRIPTION FACTOR |
AT3G28730 | PredictedAffinity Capture-MS | FSW = 0.0534
| Unknown | ATHMG (ARABIDOPSIS THALIANA HIGH MOBILITY GROUP) TRANSCRIPTION FACTOR |
AT5G14800 | PredictedAffinity Capture-MS | FSW = 0.0270
| Unknown | P5CR (PYRROLINE-5- CARBOXYLATE (P5C) REDUCTASE) PYRROLINE-5-CARBOXYLATE REDUCTASE |
AT1G13160 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Westerntwo hybrid | FSW = 0.0257
| Unknown | SDA1 FAMILY PROTEIN |
AT1G52740 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.0667
| Unknown | HTA9 (HISTONE H2A PROTEIN 9) DNA BINDING |
AT5G41880 | PredictedAffinity Capture-MS | FSW = 0.0257
| Unknown | POLA3 DNA PRIMASE |
AT5G14520 | PredictedAffinity Capture-MS | FSW = 0.0130
| Unknown | PESCADILLO-RELATED |
AT5G13780 | PredictedAffinity Capture-MS | FSW = 0.0161
| Unknown | GCN5-RELATED N-ACETYLTRANSFERASE PUTATIVE |
AT4G26070 | PredictedAffinity Capture-MS | FSW = 0.0280
| Unknown | MEK1 (MAP KINASE/ ERK KINASE 1) MAP KINASE KINASE/ KINASE/ PROTEIN BINDING |
AT2G40730 | PredictedAffinity Capture-MS | FSW = 0.0229
| Unknown | HEAT REPEAT-CONTAINING PROTEIN |
AT2G39770 | PredictedAffinity Capture-MS | FSW = 0.0083
| Unknown | CYT1 (CYTOKINESIS DEFECTIVE 1) MANNOSE-1-PHOSPHATE GUANYLYLTRANSFERASE/ NUCLEOTIDYLTRANSFERASE |
AT5G02530 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.0619
| Unknown | RNA AND EXPORT FACTOR-BINDING PROTEIN PUTATIVE |
AT1G52380 | PredictedAffinity Capture-MS | FSW = 0.0296
| Unknown | RAN-BINDING PROTEIN 1 DOMAIN-CONTAINING PROTEIN / RANBP1 DOMAIN-CONTAINING PROTEIN |
AT1G52160 | PredictedAffinity Capture-MS | FSW = 0.0444
| Unknown | TRZ3 (TRNASE Z 3) 3-TRNA PROCESSING ENDORIBONUCLEASE/ CATALYTIC |
AT1G26170 | PredictedReconstituted ComplexAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSReconstituted Complexsynthetic growth defect | FSW = 0.2008
| Unknown | BINDING / PROTEIN TRANSPORTER |
AT1G09200 | PredictedAffinity Capture-MSAffinity Capture-Western | FSW = 0.1179
| Unknown | HISTONE H3 |
AT1G08880 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternReconstituted Complex | FSW = 0.0686
| Unknown | H2AXA DNA BINDING |
AT1G04130 | PredictedAffinity Capture-MS | FSW = 0.0162
| Unknown | TETRATRICOPEPTIDE REPEAT (TPR)-CONTAINING PROTEIN |
AT5G53770 | PredictedAffinity Capture-MS | FSW = 0.0146
| Unknown | NUCLEOTIDYLTRANSFERASE FAMILY PROTEIN |
AT4G11920 | PredictedAffinity Capture-MS | FSW = 0.0227
| Unknown | CCS52A2 SIGNAL TRANSDUCER |
AT1G17130 | PredictedAffinity Capture-MS | FSW = 0.0073
| Unknown | CELL CYCLE CONTROL PROTEIN-RELATED |
AT5G50320 | PredictedSynthetic Lethality | FSW = 0.0769
| Unknown | ELO3 (ELONGATA 3) HISTONE ACETYLTRANSFERASE |
AT5G13680 | PredictedSynthetic Lethality | FSW = 0.0331
| Unknown | ABO1 (ABA-OVERLY SENSITIVE 1) TRANSCRIPTION ELONGATION REGULATOR |
AT1G49540 | PredictedSynthetic Lethality | FSW = 0.0372
| Unknown | NUCLEOTIDE BINDING |
AT1G07140 | Predictedtwo hybrid | FSW = 0.0198
| Unknown | SIRANBP RAN GTPASE BINDING |
AT4G25120 | Predictedtwo hybrid | FSW = 0.0293
| Unknown | ATP BINDING / ATP-DEPENDENT DNA HELICASE/ DNA BINDING / HYDROLASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454