Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G19570 - ( CDA1 (CYTIDINE DEAMINASE 1) cytidine deaminase )

8 Proteins interacs with AT2G19570
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT1G11250

Predicted

Affinity Capture-MS

FSW = 0.0421

Unknown

SYP125 (SYNTAXIN OF PLANTS 125) SNAP RECEPTOR
AT3G16050

Predicted

Affinity Capture-MS

FSW = 0.0213

Unknown

A37 PROTEIN HETERODIMERIZATION
AT3G17630

Predicted

Affinity Capture-MS

FSW = 0.0661

Unknown

ATCHX19 (CATION/H+ EXCHANGER 19) MONOVALENT CATIONPROTON ANTIPORTER/ SODIUMHYDROGEN ANTIPORTER
AT5G16980

Predicted

Affinity Capture-MS

FSW = 0.0147

Unknown

NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE
AT4G24040

Predicted

Shared biological function

Co-expression

FSW = 0.0203

Unknown

TRE1 (TREHALASE 1) ALPHAALPHA-TREHALASE/ TREHALASE
AT4G29640

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.0803

Unknown

CYTIDINE DEAMINASE PUTATIVE / CYTIDINE AMINOHYDROLASE PUTATIVE
AT4G29650

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.2382

Unknown

CYTIDINE DEAMINASE 4 (CDA4) (DESH) / CYTIDINE AMINOHYDROLASE
AT4G29600

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.1131

Unknown

CYTIDINE DEAMINASE PUTATIVE / CYTIDINE AMINOHYDROLASE PUTATIVE

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454