Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G19770 - ( PRF5 (PROFILIN5) actin binding / actin monomer binding )
24 Proteins interacs with AT2G19770Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G12360 | PredictedSynthetic Lethality | FSW = 0.0641
| Unknown | KEU (KEULE) PROTEIN TRANSPORTER |
AT4G04910 | PredictedSynthetic Lethality | FSW = 0.0287
| Unknown | NSF (N-ETHYLMALEIMIDE SENSITIVE FACTOR) ATP BINDING / BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
AT4G29350 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.2207
| Unknown | PFN2 (PROFILIN 2) ACTIN BINDING / PROTEIN BINDING |
AT3G12110 | Predictedinteraction predictiontwo hybridtwo hybridtwo hybridPhenotypic SuppressionSynthetic LethalityPhenotypic EnhancementAffinity Capture-WesternReconstituted ComplexSynthetic Rescuebiochemicalinterologs mappingEnriched domain pairCo-expression | FSW = 0.0247
| Unknown | ACT11 (ACTIN-11) STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT1G11680 | PredictedSynthetic Lethality | FSW = 0.0266
| Unknown | CYP51G1 (CYTOCHROME P450 51G1) OXYGEN BINDING / STEROL 14-DEMETHYLASE |
AT5G45970 | PredictedPhenotypic Suppression | FSW = 0.0315
| Unknown | ARAC2 (ARABIDOPSIS RAC-LIKE 2) GTP BINDING |
AT2G19760 | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.3841
| Unknown | PRF1 (PROFILIN 1) ACTIN BINDING |
AT3G09900 | Predictedinteraction prediction | FSW = 0.0581
| Unknown | ATRABE1E (ARABIDOPSIS RAB GTPASE HOMOLOG E1E) GTP BINDING |
AT1G20970 | Predictedinteraction prediction | FSW = 0.1191
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN PLASMA MEMBRANE VACUOLE EXPRESSED IN GUARD CELL CULTURED CELL BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS PPI1 (PROTON PUMP INTERACTOR 1) PROTEIN BINDING (TAIRAT4G275001) HAS 53409 BLAST HITS TO 33585 PROTEINS IN 1572 SPECIES ARCHAE - 464 BACTERIA - 7066 METAZOA - 25076 FUNGI - 5173 PLANTS - 1740 VIRUSES - 257 OTHER EUKARYOTES - 13633 (SOURCE NCBI BLINK) |
AT2G17800 | PredictedPhenotypic Suppression | FSW = 0.0329
| Unknown | ARAC1 GTP BINDING |
AT4G29340 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.2759
| Unknown | PRF4 (PROFILIN 4) ACTIN BINDING |
AT1G31810 | PredictedPhenotypic Enhancement | FSW = 0.1071
| Unknown | ACTIN BINDING |
AT1G13180 | Predictedtwo hybridtwo hybridEnriched domain pairCo-expression | FSW = 0.0299
| Unknown | DIS1 (DISTORTED TRICHOMES 1) ATP BINDING / ACTIN BINDING / PROTEIN BINDING / STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT4G28820 | Predictedtwo hybridtwo hybrid | FSW = 0.0395
| Unknown | ZINC FINGER (HIT TYPE) FAMILY PROTEIN |
AT5G06150 | PredictedPhenotypic SuppressionPhenotypic Suppression | FSW = 0.0184
| Unknown | CYC1BAT CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT3G27000 | PredictedSynthetic Lethality | FSW = 0.0298
| Unknown | ARP2 (ACTIN RELATED PROTEIN 2) PROTEIN BINDING / STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT3G56640 | PredictedSynthetic Lethality | FSW = 0.0729
| Unknown | EXOCYST COMPLEX SUBUNIT SEC15-LIKE FAMILY PROTEIN |
AT3G60860 | PredictedSynthetic Lethality | FSW = 0.0165
| Unknown | GUANINE NUCLEOTIDE EXCHANGE FAMILY PROTEIN |
AT4G34490 | Predictedinteraction predictioninterologs mappingAffinity Capture-Westerntwo hybridSynthetic Rescue | FSW = 0.0855
| Unknown | ATCAP1 (ARABIDOPSIS THALIANA CYCLASE ASSOCIATED PROTEIN 1) ACTIN BINDING |
AT5G07760 | Predictedtwo hybridinterologs mappingtwo hybrid | FSW = 0.0584
| Unknown | FORMIN HOMOLOGY 2 DOMAIN-CONTAINING PROTEIN / FH2 DOMAIN-CONTAINING PROTEIN |
AT5G09350 | PredictedSynthetic Lethality | FSW = 0.1763
| Unknown | PI-4KBETA2 (PHOSPHATIDYLINOSITOL 4-OH KINASE BETA2) BINDING / INOSITOL OR PHOSPHATIDYLINOSITOL KINASE/ PHOSPHOTRANSFERASE ALCOHOL GROUP AS ACCEPTOR |
AT5G19610 | Predictedinterologs mapping | FSW = 0.0312
| Unknown | SEC7 DOMAIN-CONTAINING PROTEIN |
AT4G38470 | PredictedPhenotypic Enhancement | FSW = 0.0324
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT5G07780 | Predictedinteraction prediction | FSW = 0.0315
| Unknown | FORMIN HOMOLOGY 2 DOMAIN-CONTAINING PROTEIN / FH2 DOMAIN-CONTAINING PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454