Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Find locus: show subcellular location show Ontology

Export PPI as  



AtPIN will be upgraded. Please send your suggestions here

AT2G20140 - ( 26S protease regulatory complex subunit 4 putative )

41 Proteins interacs with AT2G20140
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT3G22630

Predicted

Affinity Capture-MS

FSW = 0.3071

Class C:

plasma membrane

PBD1 (20S PROTEASOME BETA SUBUNIT D1) PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT5G09810

Predicted

two hybrid

FSW = 0.0165

Class C:

plasma membrane

ACT7 (ACTIN 7) STRUCTURAL CONSTITUENT OF CYTOSKELETON
AT3G53230

Predicted

in vivo

in vitro

FSW = 0.0245

Class C:

plasma membrane

CELL DIVISION CYCLE PROTEIN 48 PUTATIVE / CDC48 PUTATIVE
AT1G45000

Predicted

Affinity Capture-MS

Phylogenetic profile method

Co-expression

FSW = 0.6215

Class C:

plasma membrane

26S PROTEASOME REGULATORY COMPLEX SUBUNIT P42D PUTATIVE
AT1G04810

Predicted

Affinity Capture-MS

FSW = 0.5426

Class C:

plasma membrane

26S PROTEASOME REGULATORY SUBUNIT PUTATIVE
AT2G20580

Predicted

two hybrid

two hybrid

in vitro

Co-purification

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interologs mapping

Reconstituted Complex

co-fractionation

Co-fractionation

Co-purification

Gene neighbors method

Co-expression

FSW = 0.3761

Class C:

plasma membrane

RPN1A (26S PROTEASOME REGULATORY SUBUNIT S2 1A) BINDING / ENZYME REGULATOR
AT1G53750

Predicted

in vitro

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

Phylogenetic profile method

FSW = 0.3948

Class C:

plasma membrane

RPT1A (REGULATORY PARTICLE TRIPLE-A 1A) ATPASE
AT5G19990

Predicted

Affinity Capture-MS

Affinity Capture-MS

Phylogenetic profile method

FSW = 0.3062

Class C:

plasma membrane

RPT6A (REGULATORY PARTICLE TRIPLE-A ATPASE 6A) ATPASE
AT4G24820

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.5671

Class C:

plasma membrane

26S PROTEASOME REGULATORY SUBUNIT PUTATIVE (RPN7)
AT3G57290

Predicted

Synthetic Lethality

interologs mapping

Affinity Capture-Western

Phenotypic Enhancement

FSW = 0.1290

Class C:

plasma membrane

EIF3E (EUKARYOTIC TRANSLATION INITIATION FACTOR 3E) TRANSLATION INITIATION FACTOR
AT1G09100

Predicted

Affinity Capture-MS

Phylogenetic profile method

Co-expression

FSW = 0.6213

Class C:

plasma membrane

RPT5B (26S PROTEASOME AAA-ATPASE SUBUNIT RPT5B) ATPASE/ CALMODULIN BINDING
AT1G20200

Predicted

Affinity Capture-MS

FSW = 0.4384

Class C:

plasma membrane

EMB2719 (EMBRYO DEFECTIVE 2719) ENZYME REGULATOR
AT3G51260

Predicted

in vitro

two hybrid

Co-expression

FSW = 0.2322

Unknown

PAD1 (20S PROTEASOME ALPHA SUBUNIT PAD1) ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT3G15180

Predicted

Affinity Capture-MS

in vitro

FSW = 0.1466

Unknown

PROTEASOME-RELATED
AT4G14800

Predicted

interaction prediction

FSW = 0.2485

Unknown

PBD2 (20S PROTEASOME BETA SUBUNIT 2) PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT2G06510

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0214

Unknown

RPA1A (REPLICATION PROTEIN A 1A) DNA BINDING / NUCLEIC ACID BINDING
AT3G05530

Predicted

Phylogenetic profile method

FSW = 0.4917

Unknown

RPT5A (REGULATORY PARTICLE TRIPLE-A ATPASE 5A) ATPASE/ CALMODULIN BINDING
AT1G16190

Predicted

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

FSW = 0.2836

Unknown

DNA REPAIR PROTEIN RAD23 PUTATIVE
AT5G58290

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

co-fractionation

Co-fractionation

Co-purification

interaction prediction

Phylogenetic profile method

Co-expression

FSW = 0.4600

Unknown

RPT3 (REGULATORY PARTICLE TRIPLE-A ATPASE 3) ATPASE
AT5G57950

Predicted

two hybrid

two hybrid

FSW = 0.1481

Unknown

26S PROTEASOME REGULATORY SUBUNIT PUTATIVE
AT4G19006

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.5217

Unknown

26S PROTEASOME REGULATORY SUBUNIT PUTATIVE (RPN9)
AT5G05780

Predicted

in vitro

Affinity Capture-MS

Co-expression

FSW = 0.2695

Unknown

RPN8A (RP NON-ATPASE SUBUNIT 8A)
AT1G65650

Predicted

synthetic growth defect

FSW = 0.1875

Unknown

UCH2 UBIQUITIN THIOLESTERASE/ UBIQUITIN-SPECIFIC PROTEASE
AT2G46290

Predicted

Colocalization

FSW = 0.0663

Unknown

EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT 2 PUTATIVE / EIF-3 BETA PUTATIVE / EIF3I PUTATIVE
AT3G21280

Predicted

Synthetic Lethality

FSW = 0.1825

Unknown

UBP7 (UBIQUITIN-SPECIFIC PROTEASE 7) UBIQUITIN THIOLESTERASE/ UBIQUITIN-SPECIFIC PROTEASE
AT4G38630

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

Affinity Capture-MS

interaction prediction

FSW = 0.2250

Unknown

RPN10 (REGULATORY PARTICLE NON-ATPASE 10) PEPTIDE RECEPTOR
AT5G09900

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

Affinity Capture-MS

interaction prediction

FSW = 0.4322

Unknown

EMB2107 (EMBRYO DEFECTIVE 2107)
AT1G64750

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.3784

Unknown

ATDSS1(I) (ARABIDOPSIS THALIANA DELETION OF SUV3 SUPRESSOR 1(I))
AT5G51140

Predicted

Affinity Capture-MS

FSW = 0.0278

Unknown

PSEUDOURIDINE SYNTHASE FAMILY PROTEIN
AT5G23540

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

FSW = 0.5091

Unknown

26S PROTEASOME REGULATORY SUBUNIT PUTATIVE
AT1G51710

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

FSW = 0.2646

Unknown

UBP6 (UBIQUITIN-SPECIFIC PROTEASE 6) CALMODULIN BINDING / UBIQUITIN-SPECIFIC PROTEASE
AT1G64520

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

FSW = 0.5207

Unknown

RPN12A (REGULATORY PARTICLE NON-ATPASE 12A) PEPTIDASE
AT3G11270

Predicted

Affinity Capture-MS

FSW = 0.4914

Unknown

MEE34 (MATERNAL EFFECT EMBRYO ARREST 34)
AT1G29150

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

FSW = 0.3286

Unknown

ATS9 (ARABIDOPSIS NON-ATPASE SUBUNIT 9)
AT3G02820

Predicted

Synthetic Lethality

FSW = 0.0313

Unknown

ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN
AT4G29040

Predicted

Gene fusion method

Phylogenetic profile method

Co-expression

FSW = 0.6757

Unknown

RPT2A (REGULATORY PARTICLE AAA-ATPASE 2A) ATPASE
AT5G43010

Predicted

Phylogenetic profile method

FSW = 0.4585

Unknown

RPT4A ATPASE
AT1G53780

Predicted

Phylogenetic profile method

FSW = 0.3234

Unknown

ATP BINDING / ATPASE/ HYDROLASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PEPTIDYL-PROLYL CIS-TRANS ISOMERASE
AT5G20000

Predicted

Phylogenetic profile method

FSW = 0.2092

Unknown

26S PROTEASOME AAA-ATPASE SUBUNIT PUTATIVE
AT5G51980

Predicted

Gene fusion method

FSW = 0.1546

Unknown

WD-40 REPEAT FAMILY PROTEIN / ZFWD2 PROTEIN (ZFWD2) PUTATIVE
AT4G34110

Predicted

Gene fusion method

FSW = 0.0376

Unknown

PAB2 (POLY(A) BINDING 2) RNA BINDING / TRANSLATION INITIATION FACTOR

Downloads

Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

Learn more

How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454