Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G20140 - ( 26S protease regulatory complex subunit 4 putative )
41 Proteins interacs with AT2G20140| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
AT3G22630
   | PredictedAffinity Capture-MS | FSW = 0.3071
| Class C:plasma membrane | PBD1 (20S PROTEASOME BETA SUBUNIT D1) PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
| AT5G09810
| Predictedtwo hybrid | FSW = 0.0165
| Class C:plasma membrane | ACT7 (ACTIN 7) STRUCTURAL CONSTITUENT OF CYTOSKELETON |
| AT3G53230
| Predictedin vivoin vitro | FSW = 0.0245
| Class C:plasma membrane | CELL DIVISION CYCLE PROTEIN 48 PUTATIVE / CDC48 PUTATIVE |
| AT1G45000
| PredictedAffinity Capture-MSPhylogenetic profile methodCo-expression | FSW = 0.6215
| Class C:plasma membrane | 26S PROTEASOME REGULATORY COMPLEX SUBUNIT P42D PUTATIVE |
| AT1G04810
| PredictedAffinity Capture-MS | FSW = 0.5426
| Class C:plasma membrane | 26S PROTEASOME REGULATORY SUBUNIT PUTATIVE |
| AT2G20580
| Predictedtwo hybridtwo hybridin vitroCo-purificationAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinterologs mappingReconstituted Complexco-fractionationCo-fractionationCo-purificationGene neighbors methodCo-expression | FSW = 0.3761
| Class C:plasma membrane | RPN1A (26S PROTEASOME REGULATORY SUBUNIT S2 1A) BINDING / ENZYME REGULATOR |
| AT1G53750
| Predictedin vitroAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionPhylogenetic profile method | FSW = 0.3948
| Class C:plasma membrane | RPT1A (REGULATORY PARTICLE TRIPLE-A 1A) ATPASE |
| AT5G19990
| PredictedAffinity Capture-MSAffinity Capture-MSPhylogenetic profile method | FSW = 0.3062
| Class C:plasma membrane | RPT6A (REGULATORY PARTICLE TRIPLE-A ATPASE 6A) ATPASE |
| AT4G24820
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.5671
| Class C:plasma membrane | 26S PROTEASOME REGULATORY SUBUNIT PUTATIVE (RPN7) |
| AT3G57290
| PredictedSynthetic Lethalityinterologs mappingAffinity Capture-WesternPhenotypic Enhancement | FSW = 0.1290
| Class C:plasma membrane | EIF3E (EUKARYOTIC TRANSLATION INITIATION FACTOR 3E) TRANSLATION INITIATION FACTOR |
| AT1G09100
| PredictedAffinity Capture-MSPhylogenetic profile methodCo-expression | FSW = 0.6213
| Class C:plasma membrane | RPT5B (26S PROTEASOME AAA-ATPASE SUBUNIT RPT5B) ATPASE/ CALMODULIN BINDING |
| AT1G20200
| PredictedAffinity Capture-MS | FSW = 0.4384
| Class C:plasma membrane | EMB2719 (EMBRYO DEFECTIVE 2719) ENZYME REGULATOR |
| AT3G51260
| Predictedin vitrotwo hybridCo-expression | FSW = 0.2322
| Unknown | PAD1 (20S PROTEASOME ALPHA SUBUNIT PAD1) ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
| AT3G15180
| PredictedAffinity Capture-MSin vitro | FSW = 0.1466
| Unknown | PROTEASOME-RELATED |
| AT4G14800
| Predictedinteraction prediction | FSW = 0.2485
| Unknown | PBD2 (20S PROTEASOME BETA SUBUNIT 2) PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
| AT2G06510
| PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0214
| Unknown | RPA1A (REPLICATION PROTEIN A 1A) DNA BINDING / NUCLEIC ACID BINDING |
| AT3G05530
| PredictedPhylogenetic profile method | FSW = 0.4917
| Unknown | RPT5A (REGULATORY PARTICLE TRIPLE-A ATPASE 5A) ATPASE/ CALMODULIN BINDING |
| AT1G16190
| PredictedAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.2836
| Unknown | DNA REPAIR PROTEIN RAD23 PUTATIVE |
| AT5G58290
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSco-fractionationCo-fractionationCo-purificationinteraction predictionPhylogenetic profile methodCo-expression | FSW = 0.4600
| Unknown | RPT3 (REGULATORY PARTICLE TRIPLE-A ATPASE 3) ATPASE |
| AT5G57950
| Predictedtwo hybridtwo hybrid | FSW = 0.1481
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT PUTATIVE |
| AT4G19006
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.5217
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT PUTATIVE (RPN9) |
| AT5G05780
| Predictedin vitroAffinity Capture-MSCo-expression | FSW = 0.2695
| Unknown | RPN8A (RP NON-ATPASE SUBUNIT 8A) |
| AT1G65650
| Predictedsynthetic growth defect | FSW = 0.1875
| Unknown | UCH2 UBIQUITIN THIOLESTERASE/ UBIQUITIN-SPECIFIC PROTEASE |
| AT2G46290
| PredictedColocalization | FSW = 0.0663
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT 2 PUTATIVE / EIF-3 BETA PUTATIVE / EIF3I PUTATIVE |
| AT3G21280
| PredictedSynthetic Lethality | FSW = 0.1825
| Unknown | UBP7 (UBIQUITIN-SPECIFIC PROTEASE 7) UBIQUITIN THIOLESTERASE/ UBIQUITIN-SPECIFIC PROTEASE |
| AT4G38630
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MSinteraction prediction | FSW = 0.2250
| Unknown | RPN10 (REGULATORY PARTICLE NON-ATPASE 10) PEPTIDE RECEPTOR |
| AT5G09900
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MSinteraction prediction | FSW = 0.4322
| Unknown | EMB2107 (EMBRYO DEFECTIVE 2107) |
| AT1G64750
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3784
| Unknown | ATDSS1(I) (ARABIDOPSIS THALIANA DELETION OF SUV3 SUPRESSOR 1(I)) |
| AT5G51140
| PredictedAffinity Capture-MS | FSW = 0.0278
| Unknown | PSEUDOURIDINE SYNTHASE FAMILY PROTEIN |
| AT5G23540
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.5091
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT PUTATIVE |
| AT1G51710
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.2646
| Unknown | UBP6 (UBIQUITIN-SPECIFIC PROTEASE 6) CALMODULIN BINDING / UBIQUITIN-SPECIFIC PROTEASE |
| AT1G64520
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.5207
| Unknown | RPN12A (REGULATORY PARTICLE NON-ATPASE 12A) PEPTIDASE |
| AT3G11270
| PredictedAffinity Capture-MS | FSW = 0.4914
| Unknown | MEE34 (MATERNAL EFFECT EMBRYO ARREST 34) |
| AT1G29150
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.3286
| Unknown | ATS9 (ARABIDOPSIS NON-ATPASE SUBUNIT 9) |
| AT3G02820
| PredictedSynthetic Lethality | FSW = 0.0313
| Unknown | ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN |
| AT4G29040
| PredictedGene fusion methodPhylogenetic profile methodCo-expression | FSW = 0.6757
| Unknown | RPT2A (REGULATORY PARTICLE AAA-ATPASE 2A) ATPASE |
| AT5G43010
| PredictedPhylogenetic profile method | FSW = 0.4585
| Unknown | RPT4A ATPASE |
| AT1G53780
| PredictedPhylogenetic profile method | FSW = 0.3234
| Unknown | ATP BINDING / ATPASE/ HYDROLASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PEPTIDYL-PROLYL CIS-TRANS ISOMERASE |
| AT5G20000
| PredictedPhylogenetic profile method | FSW = 0.2092
| Unknown | 26S PROTEASOME AAA-ATPASE SUBUNIT PUTATIVE |
| AT5G51980
| PredictedGene fusion method | FSW = 0.1546
| Unknown | WD-40 REPEAT FAMILY PROTEIN / ZFWD2 PROTEIN (ZFWD2) PUTATIVE |
| AT4G34110
| PredictedGene fusion method | FSW = 0.0376
| Unknown | PAB2 (POLY(A) BINDING 2) RNA BINDING / TRANSLATION INITIATION FACTOR |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
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