Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G20160 - ( MEO (MEIDOS) protein binding / ubiquitin-protein ligase )

19 Proteins interacs with AT2G20160
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT1G75950

Experimental

FSW = 0.2722

Unknown

SKP1 (S PHASE KINASE-ASSOCIATED PROTEIN 1) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT4G33430

Experimental

FSW = 0.3048

Unknown

BAK1 (BRI1-ASSOCIATED RECEPTOR KINASE) KINASE/ PROTEIN BINDING / PROTEIN HETERODIMERIZATION/ PROTEIN SERINE/THREONINE KINASE
AT1G30950

Experimental

FSW = 0.4737

Unknown

UFO (UNUSUAL FLORAL ORGANS) TRANSCRIPTION FACTOR BINDING / UBIQUITIN-PROTEIN LIGASE
AT4G12560

Experimental

two hybrid

FSW = 0.7200

Unknown

F-BOX FAMILY PROTEIN
AT1G20140

Predicted

Enriched domain pair

Phylogenetic profile method

FSW = 0.3955

Unknown

ASK4 (ARABIDOPSIS SKP1-LIKE 4) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT3G60020

Predicted

Enriched domain pair

Phylogenetic profile method

Co-expression

FSW = 0.8222

Unknown

ASK5 (ARABIDOPSIS SKP1-LIKE 5) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT3G60010

Predicted

Enriched domain pair

Phylogenetic profile method

Co-expression

FSW = 0.6557

Unknown

ASK13 (ARABIDOPSIS SKP1-LIKE 13) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT2G03160

Predicted

Enriched domain pair

Phylogenetic profile method

Co-expression

FSW = 0.6349

Unknown

ASK19 (ARABIDOPSIS SKP1-LIKE 19) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT2G03190

Predicted

Enriched domain pair

Phylogenetic profile method

Co-expression

FSW = 0.8745

Unknown

ASK16 (ARABIDOPSIS SKP1-LIKE 16) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT5G42190

Predicted

Enriched domain pair

Phylogenetic profile method

Co-expression

FSW = 0.1851

Unknown

ASK2 (ARABIDOPSIS SKP1-LIKE 2) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT3G21860

Predicted

Enriched domain pair

Phylogenetic profile method

Co-expression

FSW = 0.8975

Unknown

ASK10 (ARABIDOPSIS SKP1-LIKE 10) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT2G03170

Predicted

Enriched domain pair

Phylogenetic profile method

Co-expression

FSW = 0.7273

Unknown

ASK14 (ARABIDOPSIS SKP1-LIKE 14) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT3G25650

Predicted

Enriched domain pair

Phylogenetic profile method

Co-expression

FSW = 0.9031

Unknown

ASK15 (ARABIDOPSIS SKP1-LIKE 15) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT3G21850

Predicted

Enriched domain pair

Phylogenetic profile method

Co-expression

FSW = 0.8333

Unknown

ASK9 (ARABIDOPSIS SKP1-LIKE 9) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT1G10230

Predicted

Enriched domain pair

Phylogenetic profile method

Co-expression

FSW = 0.8511

Unknown

ASK18 (ARABIDOPSIS SKP1-LIKE 18) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT3G21830

Predicted

Enriched domain pair

Phylogenetic profile method

Co-expression

FSW = 0.8927

Unknown

ASK8 (ARABIDOPSIS SKP1-LIKE 8) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT4G34210

Predicted

Enriched domain pair

Phylogenetic profile method

FSW = 0.5215

Unknown

ASK11 (ARABIDOPSIS SKP1-LIKE 11) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT2G25700

Predicted

Enriched domain pair

Phylogenetic profile method

FSW = 0.6249

Unknown

ASK3 (ARABIDOPSIS SKP1-LIKE 3) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT4G34470

Predicted

Enriched domain pair

Phylogenetic profile method

FSW = 0.7414

Unknown

ASK12 (ARABIDOPSIS SKP1-LIKE 12) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454