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AT2G20360 - ( binding / catalytic/ coenzyme binding )

6 Proteins interacs with AT2G20360

Locus	Method	FSW	Cellular Compartment Classification (C3)	Description
AT3G47930	Experimental biochemical	FSW = 0.1125	Class A: mitochondrion Class B: unclear plasma membrane Class D: plastid (p = 0.78) mitochondrion (p = 0.82)	ATGLDH (L-GALACTONO-14-LACTONE DEHYDOROGENASE) L-GULONO-14-LACTONE DEHYDROGENASE/ GALACTONOLACTONE DEHYDROGENASE
AT5G66510	Experimental	FSW = 0.0750	Class A: mitochondrion Class B: plasma membrane Class D: plastid (p = 0.78) mitochondrion (p = 0.82)	GAMMA CA3 (GAMMA CARBONIC ANHYDRASE 3) CARBONATE DEHYDRATASE
AT4G14960	Predicted two hybrid	FSW = 0.0367	Class C: plasma membrane	TUA6 STRUCTURAL CONSTITUENT OF CYTOSKELETON
AT1G04820	Predicted two hybrid two hybrid	FSW = 0.0285	Class C: plasma membrane	TUA4 STRUCTURAL CONSTITUENT OF CYTOSKELETON
AT5G24670	Predicted two hybrid	FSW = 0.0395	Unknown	CATALYTIC/ HYDROLASE/ ZINC ION BINDING
AT5G44740	Predicted two hybrid two hybrid	FSW = 0.0317	Unknown	POLH (Y-FAMILT DNA POLYMERASE H) DNA-DIRECTED DNA POLYMERASE

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from

Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment

Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment

Class C: Same as Class A but the PPI is predicted

Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB

Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

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AT2G20360 - ( binding / catalytic/ coenzyme binding )

Class A:

Class B:

Class D: