Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G20410 - ( activating signal cointegrator-related )
65 Proteins interacs with AT2G20410Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G01280 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3542
| Unknown | VDAC1 (VOLTAGE DEPENDENT ANION CHANNEL 1) VOLTAGE-GATED ANION CHANNEL |
AT1G21720 | Predictedtwo hybrid | FSW = 0.0121
| Unknown | PBC1 (PROTEASOME BETA SUBUNIT C1) PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT1G72730 | PredictedSynthetic LethalitySynthetic LethalitySynthetic RescuePhenotypic Suppression | FSW = 0.1882
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR 4A PUTATIVE / EIF-4A PUTATIVE |
AT3G08710 | PredictedSynthetic Rescue | FSW = 0.0109
| Unknown | ATH9 (THIOREDOXIN H-TYPE 9) |
AT1G14010 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.5656
| Unknown | EMP24/GP25L/P24 FAMILY PROTEIN |
AT3G59280 | PredictedAffinity Capture-MS | FSW = 0.0805
| Unknown | TXR1 (THAXTOMIN A RESISTANT 1) |
AT2G04940 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2081
| Unknown | SCRAMBLASE-RELATED |
AT1G74560 | Predictedtwo hybrid | FSW = 0.0235
| Unknown | NRP1 (NAP1-RELATED PROTEIN 1) DNA BINDING / CHROMATIN BINDING / HISTONE BINDING |
AT3G09820 | PredictedAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MStwo hybridAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternCo-purificationSynthetic RescueProtein-peptidesynthetic growth defectSynthetic Lethality | FSW = 0.7666
| Unknown | ADK1 (ADENOSINE KINASE 1) ADENOSINE KINASE/ COPPER ION BINDING |
AT1G48850 | PredictedAffinity Capture-MS | FSW = 0.0563
| Unknown | EMB1144 (EMBRYO DEFECTIVE 1144) CHORISMATE SYNTHASE |
AT1G07790 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1205
| Unknown | HTB1 DNA BINDING |
AT3G54660 | PredictedAffinity Capture-Westernco-fractionationCo-fractionationAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSco-fractionationAffinity Capture-MSAffinity Capture-WesternColocalization | FSW = 0.1462
| Unknown | GR (GLUTATHIONE REDUCTASE) ATP BINDING / GLUTATHIONE-DISULFIDE REDUCTASE |
AT5G15450 | PredictedAffinity Capture-MS | FSW = 0.1200
| Unknown | CLPB3 (CASEIN LYTIC PROTEINASE B3) ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING |
AT5G49030 | PredictedAffinity Capture-MS | FSW = 0.1477
| Unknown | OVA2 (OVULE ABORTION 2) ATP BINDING / AMINOACYL-TRNA LIGASE/ CATALYTIC/ ISOLEUCINE-TRNA LIGASE/ NUCLEOTIDE BINDING |
AT1G18870 | PredictedAffinity Capture-MS | FSW = 0.3606
| Unknown | ICS2 (ISOCHORISMATE SYNTHASE 2) ISOCHORISMATE SYNTHASE |
AT4G08690 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.5743
| Unknown | SEC14 CYTOSOLIC FACTOR FAMILY PROTEIN / PHOSPHOGLYCERIDE TRANSFER FAMILY PROTEIN |
AT4G04720 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3079
| Unknown | CPK21 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT3G25800 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1908
| Unknown | PP2AA2 (PROTEIN PHOSPHATASE 2A SUBUNIT A2) PROTEIN PHOSPHATASE TYPE 2A REGULATOR |
AT1G63110 | PredictedAffinity Capture-MS | FSW = 0.2953
| Unknown | CELL DIVISION CYCLE PROTEIN-RELATED |
AT5G45380 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.5500
| Unknown | SODIUMSOLUTE SYMPORTER FAMILY PROTEIN |
AT3G46900 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4492
| Unknown | COPT2 COPPER ION TRANSMEMBRANE TRANSPORTER/ HIGH AFFINITY COPPER ION TRANSMEMBRANE TRANSPORTER |
AT4G14340 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3817
| Unknown | CKI1 (CASEIN KINASE I) KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT5G59960 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.6458
| Unknown | UNKNOWN PROTEIN |
AT2G40290 | PredictedSynthetic Rescue | FSW = 0.0440
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 1 PUTATIVE / EIF-2A PUTATIVE / EIF-2-ALPHA PUTATIVE |
AT1G30810 | PredictedAffinity Capture-MS | FSW = 0.5952
| Unknown | TRANSCRIPTION FACTOR |
AT3G08980 | PredictedAffinity Capture-MS | FSW = 0.5429
| Unknown | SIGNAL PEPTIDASE I FAMILY PROTEIN |
AT3G55605 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2238
| Unknown | MITOCHONDRIAL GLYCOPROTEIN FAMILY PROTEIN / MAM33 FAMILY PROTEIN |
AT4G07820 | PredictedSynthetic Lethalityco-fractionationCo-fractionationSynthetic Lethality | FSW = 0.1893
| Unknown | PATHOGENESIS-RELATED PROTEIN PUTATIVE |
AT2G38960 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSSynthetic Lethality | FSW = 0.3634
| Unknown | AERO2 (ARABIDOPSIS ENDOPLASMIC RETICULUM OXIDOREDUCTINS 2) FAD BINDING / ELECTRON CARRIER/ OXIDOREDUCTASE ACTING ON SULFUR GROUP OF DONORS DISULFIDE AS ACCEPTOR / PROTEIN BINDING |
AT3G08730 | PredictedSynthetic LethalitySynthetic Rescue | FSW = 0.0244
| Unknown | PK1 (PROTEIN-SERINE KINASE 1) KINASE/ PROTEIN BINDING / PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT5G41480 | Predictedtwo hybrid | FSW = 0.0049
| Unknown | GLA1 (GLOBULAR ARREST1) DIHYDROFOLATE SYNTHASE |
AT4G17190 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1771
| Unknown | FPS2 (FARNESYL DIPHOSPHATE SYNTHASE 2) DIMETHYLALLYLTRANSTRANSFERASE/ GERANYLTRANSTRANSFERASE |
AT1G02730 | PredictedAffinity Capture-WesternAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MStwo hybrid | FSW = 0.2303
| Unknown | ATCSLD5 14-BETA-D-XYLAN SYNTHASE/ CELLULOSE SYNTHASE |
AT1G05830 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3413
| Unknown | ATX2 (ARABIDOPSIS TRITHORAX-LIKE PROTEIN 2) DNA BINDING / HISTONE METHYLTRANSFERASE(H3-K4 SPECIFIC) |
AT1G06790 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4180
| Unknown | RNA POLYMERASE RPB7 N-TERMINAL DOMAIN-CONTAINING PROTEIN |
AT1G06830 | Predictedtwo hybrid | FSW = 0.0271
| Unknown | GLUTAREDOXIN FAMILY PROTEIN |
AT1G10350 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3919
| Unknown | DNAJ HEAT SHOCK PROTEIN PUTATIVE |
AT1G10940 | Predictedtwo hybrid | FSW = 0.2678
| Unknown | SNRK24 (SNF1-RELATED PROTEIN KINASE 24) KINASE |
AT1G21370 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2000
| Unknown | UNKNOWN PROTEIN |
AT1G23300 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MStwo hybrid | FSW = 0.0275
| Unknown | MATE EFFLUX FAMILY PROTEIN |
AT1G34580 | PredictedReconstituted Complex | FSW = 0.0171
| Unknown | MONOSACCHARIDE TRANSPORTER PUTATIVE |
AT1G63660 | Predictedtwo hybrid | FSW = 0.0516
| Unknown | GMP SYNTHASE (GLUTAMINE-HYDROLYZING) PUTATIVE / GLUTAMINE AMIDOTRANSFERASE PUTATIVE |
AT1G74250 | PredictedAffinity Capture-MS | FSW = 0.4295
| Unknown | DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN |
AT1G80710 | Predictedtwo hybrid | FSW = 0.0277
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT1G18550 | PredictedAffinity Capture-MS | FSW = 0.2167
| Unknown | ATP BINDING / MICROTUBULE MOTOR |
AT1G59580 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0738
| Unknown | ATMPK2 (ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE HOMOLOG 2) MAP KINASE/ KINASE/ PROTEIN KINASE |
AT2G13620 | PredictedSynthetic RescueSynthetic Rescue | FSW = 0.0762
| Unknown | ATCHX15 MONOVALENT CATIONPROTON ANTIPORTER/ SODIUMHYDROGEN ANTIPORTER |
AT2G29680 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4747
| Unknown | CDC6 (CELL DIVISION CONTROL 6) |
AT2G31060 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.6484
| Unknown | ELONGATION FACTOR FAMILY PROTEIN |
AT3G05760 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4990
| Unknown | NUCLEIC ACID BINDING / ZINC ION BINDING |
AT3G52590 | PredictedAffinity Capture-MS | FSW = 0.3396
| Unknown | UBQ1 (UBIQUITIN EXTENSION PROTEIN 1) PROTEIN BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME |
AT3G53880 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-purification | FSW = 0.5825
| Unknown | ALDO/KETO REDUCTASE FAMILY PROTEIN |
AT3G54630 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2529
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 11 PLANT STRUCTURES EXPRESSED DURING 6 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S KINETOCHORE PROTEIN NDC80 (INTERPROIPR005550) HAS 19800 BLAST HITS TO 12108 PROTEINS IN 845 SPECIES ARCHAE - 345 BACTERIA - 1709 METAZOA - 11031 FUNGI - 1499 PLANTS - 797 VIRUSES - 39 OTHER EUKARYOTES - 4380 (SOURCE NCBI BLINK) |
AT4G00810 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3835
| Unknown | 60S ACIDIC RIBOSOMAL PROTEIN P1 (RPP1B) |
AT4G29910 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4718
| Unknown | ORC5 (ORIGIN RECOGNITION COMPLEX PROTEIN 5) PROTEIN BINDING |
AT4G31770 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.5081
| Unknown | CALCINEURIN-LIKE PHOSPHOESTERASE FAMILY PROTEIN |
AT4G31985 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2842
| Unknown | 60S RIBOSOMAL PROTEIN L39 (RPL39C) |
AT4G37490 | PredictedSynthetic LethalitySynthetic LethalitySynthetic Rescue | FSW = 0.1309
| Unknown | CYCB11 (CYCLIN B11) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT5G16960 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.4634
| Unknown | NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE |
AT5G49970 | PredictedAffinity Capture-MS | FSW = 0.1801
| Unknown | ATPPOX (A THALIANA PYRIDOXIN (PYRODOXAMINE) 5-PHOSPHATE OXIDASE) PYRIDOXAMINE-PHOSPHATE OXIDASE |
AT5G59890 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3689
| Unknown | ADF4 (ACTIN DEPOLYMERIZING FACTOR 4) ACTIN BINDING |
AT2G29940 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.6773
| Unknown | PDR3 (PLEIOTROPIC DRUG RESISTANCE 3) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES |
AT3G47610 | Predictedtwo hybrid | FSW = 0.0048
| Unknown | TRANSCRIPTION REGULATOR/ ZINC ION BINDING |
AT4G36070 | PredictedAffinity Capture-MS | FSW = 0.0176
| Unknown | CPK18 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT5G06150 | PredictedAffinity Capture-MS | FSW = 0.1480
| Unknown | CYC1BAT CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454