Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G20530 - ( ATPHB6 (PROHIBITIN 6) )

10 Proteins interacs with AT2G20530
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT5G40770

Experimental

biochemical

FSW = 0.6480

Class A:

vacuole

mitochondrion

Class B:

unclear

plasma membrane

nucleus

cytosol

Class D:

plastid (p = 0.78)

mitochondrion (p = 0.82)

cytosol (p = 0.67)

 ATPHB3 (PROHIBITIN 3)
AT1G07510

Experimental

Affinity Capture-MS

FSW = 0.2824

Class A:

mitochondrion

Class B:

vacuole

unclear

plastid

Class D:

plastid (p = 0.78)

mitochondrion (p = 0.82)

cytosol (p = 0.67)

 FTSH10 (FTSH PROTEASE 10) ATP BINDING / ATPASE/ METALLOENDOPEPTIDASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / ZINC ION BINDING
AT5G66510

Experimental

FSW = 0.1661

Class A:

mitochondrion

Class B:

vacuole

Class D:

plastid (p = 0.78)

mitochondrion (p = 0.82)

cytosol (p = 0.67)

 GAMMA CA3 (GAMMA CARBONIC ANHYDRASE 3) CARBONATE DEHYDRATASE
AT1G03860

Predicted

Gene fusion method

Phylogenetic profile method

FSW = 0.6286

Class C:

vacuole

mitochondrion

 ATPHB2 (PROHIBITIN 2)
AT4G28510

Predicted

Phylogenetic profile method

FSW = 0.6909

Class C:

vacuole

mitochondrion

 ATPHB1 (PROHIBITIN 1)
AT3G27280

Predicted

Phylogenetic profile method

FSW = 0.4650

Class C:

vacuole

mitochondrion

 ATPHB4 (PROHIBITIN 4)
AT5G44140

Predicted

Phylogenetic profile method

FSW = 0.7020

Class C:

vacuole

mitochondrion

 ATPHB7 (PROHIBITIN 7)
AT1G69840

Predicted

Gene fusion method

FSW = 0.1955

Class C:

vacuole

 BAND 7 FAMILY PROTEIN
AT5G62740

Predicted

Gene fusion method

FSW = 0.3037

Class C:

vacuole

 BAND 7 FAMILY PROTEIN
AT5G14300

Predicted

Phylogenetic profile method

FSW = 0.4605

Class C:

mitochondrion

 ATPHB5 (PROHIBITIN 5)

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

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