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AT2G20580 - ( RPN1A (26S PROTEASOME REGULATORY SUBUNIT S2 1A) binding / enzyme regulator )

108 Proteins interacs with AT2G20580

Locus	Method	FSW	Cellular Compartment Classification (C3)	Description
AT3G48750	Experimental Affinity Capture-MS affinity technology	FSW = 0.0343	Class A: plasma membrane Class B: nucleus cytosol Class D: cytosol (p = 0.67)	CDC2 (CELL DIVISION CONTROL 2) CYCLIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN BINDING / PROTEIN KINASE
AT2G25490	Experimental biochemical	FSW = 0.1546	Class D: cytosol (p = 0.67)	EBF1 (EIN3-BINDING F BOX PROTEIN 1) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT5G35750	Experimental	FSW = 0.0105	Unknown	AHK2 (ARABIDOPSIS HISTIDINE KINASE 2) CYTOKININ RECEPTOR/ OSMOSENSOR/ PROTEIN HISTIDINE KINASE
AT4G26080	Experimental interaction detection method Affinity Capture-MS	FSW = 0.0092	Unknown	ABI1 (ABA INSENSITIVE 1) CALCIUM ION BINDING / PROTEIN SERINE/THREONINE PHOSPHATASE
AT3G01280	Predicted two hybrid Affinity Capture-Western two hybrid Affinity Capture-Western two hybrid Co-purification far western blotting	FSW = 0.0350	Class C: plasma membrane	VDAC1 (VOLTAGE DEPENDENT ANION CHANNEL 1) VOLTAGE-GATED ANION CHANNEL
AT2G01250	Predicted Affinity Capture-MS	FSW = 0.0513	Class C: plasma membrane	60S RIBOSOMAL PROTEIN L7 (RPL7B)
AT3G12580	Predicted two hybrid	FSW = 0.0326	Class C: plasma membrane	HSP70 (HEAT SHOCK PROTEIN 70) ATP BINDING
AT3G22630	Predicted Affinity Capture-MS Co-expression	FSW = 0.2409	Class C: plasma membrane	PBD1 (20S PROTEASOME BETA SUBUNIT D1) PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT1G22780	Predicted Affinity Capture-MS	FSW = 0.0303	Class C: plasma membrane	PFL (POINTED FIRST LEAVES) RNA BINDING / NUCLEIC ACID BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME
AT5G56030	Predicted synthetic growth defect interologs mapping	FSW = 0.0443	Class C: plasma membrane	HSP81-2 (HEAT SHOCK PROTEIN 81-2) ATP BINDING
AT5G60390	Predicted Affinity Capture-MS	FSW = 0.0808	Class C: plasma membrane	ELONGATION FACTOR 1-ALPHA / EF-1-ALPHA
AT1G45000	Predicted Co-purification Affinity Capture-MS Affinity Capture-MS Co-purification Co-expression	FSW = 0.3153	Class C: plasma membrane	26S PROTEASOME REGULATORY COMPLEX SUBUNIT P42D PUTATIVE
AT2G21540	Predicted Affinity Capture-MS	FSW = 0.0361	Class C: plasma membrane	SFH3 (SEC14-LIKE 3) PHOSPHATIDYLINOSITOL TRANSPORTER
AT5G52640	Predicted synthetic growth defect Affinity Capture-MS interologs mapping	FSW = 0.0218	Class C: plasma membrane	ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING
AT2G47000	Predicted interologs mapping	FSW = 0.0085	Class C: plasma membrane	ABCB4 (ATP BINDING CASSETTE SUBFAMILY B4) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES / XENOBIOTIC-TRANSPORTING ATPASE
AT1G02520	Predicted interologs mapping	FSW = 0.0124	Class C: plasma membrane	PGP11 (P-GLYCOPROTEIN 11) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES
AT5G23900	Predicted Affinity Capture-MS	FSW = 0.0110	Class C: plasma membrane	60S RIBOSOMAL PROTEIN L13 (RPL13D)
AT1G04810	Predicted Co-purification Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Co-purification	FSW = 0.4038	Class C: plasma membrane	26S PROTEASOME REGULATORY SUBUNIT PUTATIVE
AT1G53750	Predicted Reconstituted Complex in vitro Co-purification Co-purification Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS interaction prediction	FSW = 0.3513	Class C: plasma membrane	RPT1A (REGULATORY PARTICLE TRIPLE-A 1A) ATPASE
AT5G19990	Predicted Reconstituted Complex Co-purification Co-purification Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS interaction prediction	FSW = 0.2741	Class C: plasma membrane	RPT6A (REGULATORY PARTICLE TRIPLE-A ATPASE 6A) ATPASE
AT2G20140	Predicted two hybrid two hybrid in vitro Co-purification Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS interologs mapping Reconstituted Complex co-fractionation Co-fractionation Co-purification Gene neighbors method Co-expression	FSW = 0.3761	Class C: plasma membrane	26S PROTEASE REGULATORY COMPLEX SUBUNIT 4 PUTATIVE
AT2G18040	Predicted Affinity Capture-MS interaction prediction	FSW = 0.0096	Class C: plasma membrane	PIN1AT (PEPTIDYLPROLYL CIS/TRANS ISOMERASE NIMA-INTERACTING 1) PEPTIDYL-PROLYL CIS-TRANS ISOMERASE
AT4G24820	Predicted Co-purification Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Co-expression	FSW = 0.3804	Class C: plasma membrane	26S PROTEASOME REGULATORY SUBUNIT PUTATIVE (RPN7)
AT3G57290	Predicted Affinity Capture-Western	FSW = 0.0545	Class C: plasma membrane	EIF3E (EUKARYOTIC TRANSLATION INITIATION FACTOR 3E) TRANSLATION INITIATION FACTOR
AT1G09100	Predicted Co-purification Affinity Capture-MS Affinity Capture-MS Co-purification	FSW = 0.3130	Class C: plasma membrane	RPT5B (26S PROTEASOME AAA-ATPASE SUBUNIT RPT5B) ATPASE/ CALMODULIN BINDING
AT1G75990	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Co-purification	FSW = 0.3418	Class C: plasma membrane	26S PROTEASOME REGULATORY SUBUNIT S3 PUTATIVE (RPN3)
AT1G20200	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Co-purification Co-expression	FSW = 0.3677	Class C: plasma membrane	EMB2719 (EMBRYO DEFECTIVE 2719) ENZYME REGULATOR
AT4G38600	Predicted Affinity Capture-Western	FSW = 0.0684	Class C: plasma membrane	KAK (KAKTUS) UBIQUITIN-PROTEIN LIGASE
AT5G67500	Predicted Affinity Capture-MS	FSW = 0.0296	Unknown	VDAC2 (VOLTAGE DEPENDENT ANION CHANNEL 2) VOLTAGE-GATED ANION CHANNEL
AT3G51260	Predicted Affinity Capture-MS	FSW = 0.1970	Unknown	PAD1 (20S PROTEASOME ALPHA SUBUNIT PAD1) ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT2G27020	Predicted Co-purification	FSW = 0.0972	Unknown	PAG1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT1G34030	Predicted Affinity Capture-MS	FSW = 0.0345	Unknown	40S RIBOSOMAL PROTEIN S18 (RPS18B)
AT3G15180	Predicted Affinity Capture-MS in vitro	FSW = 0.0645	Unknown	PROTEASOME-RELATED
AT4G14800	Predicted Affinity Capture-MS interaction prediction	FSW = 0.2483	Unknown	PBD2 (20S PROTEASOME BETA SUBUNIT 2) PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT4G31300	Predicted Affinity Capture-MS Co-expression	FSW = 0.1250	Unknown	PBA1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT3G20390	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.0274	Unknown	ENDORIBONUCLEASE L-PSP FAMILY PROTEIN
AT2G29990	Predicted Affinity Capture-MS	FSW = 0.0246	Unknown	NDA2 (ALTERNATIVE NAD(P)H DEHYDROGENASE 2) FAD BINDING / NADH DEHYDROGENASE/ OXIDOREDUCTASE
AT5G36880	Predicted Affinity Capture-MS	FSW = 0.0509	Unknown	ACETYL-COA SYNTHETASE PUTATIVE / ACETATE-COA LIGASE PUTATIVE
AT2G29690	Predicted Affinity Capture-MS	FSW = 0.0167	Unknown	ASA2 (ANTHRANILATE SYNTHASE 2) ANTHRANILATE SYNTHASE
AT1G71440	Predicted Affinity Capture-MS interaction prediction	FSW = 0.0177	Unknown	PFI (PFIFFERLING)
AT1G22170	Predicted Affinity Capture-MS	FSW = 0.0209	Unknown	PHOSPHOGLYCERATE/BISPHOSPHOGLYCERATE MUTASE FAMILY PROTEIN
AT1G22450	Predicted two hybrid two hybrid	FSW = 0.0548	Unknown	COX6B (CYTOCHROME C OXIDASE 6B) CYTOCHROME-C OXIDASE
AT3G12050	Predicted Affinity Capture-MS	FSW = 0.0476	Unknown	AHA1 DOMAIN-CONTAINING PROTEIN
AT3G05530	Predicted Affinity Capture-MS Affinity Capture-MS Co-purification Co-purification Affinity Capture-MS	FSW = 0.3052	Unknown	RPT5A (REGULATORY PARTICLE TRIPLE-A ATPASE 5A) ATPASE/ CALMODULIN BINDING
AT1G03190	Predicted Affinity Capture-MS interaction prediction	FSW = 0.0206	Unknown	UVH6 (ULTRAVIOLET HYPERSENSITIVE 6) ATP BINDING / ATP-DEPENDENT DNA HELICASE/ ATP-DEPENDENT HELICASE/ DNA BINDING / HYDROLASE ACTING ON ACID ANHYDRIDES IN PHOSPHORUS-CONTAINING ANHYDRIDES / NUCLEIC ACID BINDING
AT3G20970	Predicted Affinity Capture-MS	FSW = 0.0172	Unknown	NFU4 STRUCTURAL MOLECULE
AT1G72480	Predicted Affinity Capture-MS	FSW = 0.0382	Unknown	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN GOLGI APPARATUS EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S TRANSMEMBRANE RECEPTOR EUKARYOTA (INTERPROIPR009637) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT2G010701) HAS 422 BLAST HITS TO 420 PROTEINS IN 121 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 208 FUNGI - 101 PLANTS - 83 VIRUSES - 0 OTHER EUKARYOTES - 30 (SOURCE NCBI BLINK)
AT3G16050	Predicted Affinity Capture-MS	FSW = 0.0592	Unknown	A37 PROTEIN HETERODIMERIZATION
AT1G79750	Predicted Affinity Capture-MS	FSW = 0.0635	Unknown	ATNADP-ME4 (NADP-MALIC ENZYME 4) MALATE DEHYDROGENASE (OXALOACETATE-DECARBOXYLATING) (NADP+)/ MALIC ENZYME/ OXIDOREDUCTASE ACTING ON NADH OR NADPH NAD OR NADP AS ACCEPTOR
AT5G58290	Predicted Co-purification Co-purification Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS interaction prediction	FSW = 0.4028	Unknown	RPT3 (REGULATORY PARTICLE TRIPLE-A ATPASE 3) ATPASE
AT3G42830	Predicted Affinity Capture-MS	FSW = 0.0097	Unknown	RING-BOX PROTEIN ROC1/RBX1/HRT1 PUTATIVE
AT5G38470	Predicted Reconstituted Complex two hybrid two hybrid Affinity Capture-MS Affinity Capture-Western Reconstituted Complex	FSW = 0.1107	Unknown	DNA REPAIR PROTEIN RAD23 PUTATIVE
AT1G16190	Predicted two hybrid Reconstituted Complex interologs mapping Reconstituted Complex Affinity Capture-Western Affinity Capture-MS two hybrid interaction prediction	FSW = 0.1589	Unknown	DNA REPAIR PROTEIN RAD23 PUTATIVE
AT5G20570	Predicted Affinity Capture-MS interaction prediction	FSW = 0.0096	Unknown	RBX1 (RING-BOX 1) PROTEIN BINDING
AT4G26840	Predicted Affinity Capture-MS	FSW = 0.0342	Unknown	SUMO1 (SMALL UBIQUITIN-LIKE MODIFIER 1) PROTEIN BINDING / PROTEIN TAG
AT4G19006	Predicted Co-purification Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS	FSW = 0.3823	Unknown	26S PROTEASOME REGULATORY SUBUNIT PUTATIVE (RPN9)
AT5G07590	Predicted Affinity Capture-MS	FSW = 0.0177	Unknown	WD-40 REPEAT PROTEIN FAMILY
AT3G17205	Predicted Reconstituted Complex	FSW = 0.0327	Unknown	UPL6 (UBIQUITIN PROTEIN LIGASE 6) UBIQUITIN-PROTEIN LIGASE
AT4G06599	Predicted two hybrid	FSW = 0.0191	Unknown	UBIQUITIN FAMILY PROTEIN
AT1G29150	Predicted Co-purification Co-purification Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Co-expression	FSW = 0.2618	Unknown	ATS9 (ARABIDOPSIS NON-ATPASE SUBUNIT 9)
AT1G30580	Predicted Affinity Capture-MS	FSW = 0.0199	Unknown	GTP BINDING
AT1G51710	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS	FSW = 0.2059	Unknown	UBP6 (UBIQUITIN-SPECIFIC PROTEASE 6) CALMODULIN BINDING / UBIQUITIN-SPECIFIC PROTEASE
AT1G54290	Predicted two hybrid interaction prediction	FSW = 0.0420	Unknown	EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 PUTATIVE
AT1G64520	Predicted Co-purification Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Co-expression	FSW = 0.4493	Unknown	RPN12A (REGULATORY PARTICLE NON-ATPASE 12A) PEPTIDASE
AT1G10520	Predicted Affinity Capture-MS	FSW = 0.1641	Unknown	DNA POLYMERASE LAMBDA (POLL)
AT1G16280	Predicted Affinity Capture-MS Affinity Capture-MS interaction prediction	FSW = 0.0245	Unknown	DEAD/DEAH BOX HELICASE PUTATIVE
AT1G20920	Predicted Affinity Capture-MS	FSW = 0.0295	Unknown	DEAD BOX RNA HELICASE PUTATIVE
AT1G24706	Predicted Affinity Capture-MS far western blotting	FSW = 0.0393	Unknown	UNKNOWN PROTEIN
AT1G49490	Predicted Affinity Capture-MS	FSW = 0.0124	Unknown	LEUCINE-RICH REPEAT FAMILY PROTEIN / EXTENSIN FAMILY PROTEIN
AT1G60780	Predicted Affinity Capture-MS interaction prediction	FSW = 0.0199	Unknown	HAP13 (HAPLESS 13) PROTEIN BINDING
AT1G62880	Predicted Affinity Capture-MS	FSW = 0.0311	Unknown	CORNICHON FAMILY PROTEIN
AT2G03430	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS	FSW = 0.3035	Unknown	ANKYRIN REPEAT FAMILY PROTEIN
AT2G17190	Predicted Synthetic Rescue Affinity Capture-Western interaction prediction	FSW = 0.0992	Unknown	UBIQUITIN FAMILY PROTEIN
AT2G39770	Predicted Affinity Capture-MS	FSW = 0.0766	Unknown	CYT1 (CYTOKINESIS DEFECTIVE 1) MANNOSE-1-PHOSPHATE GUANYLYLTRANSFERASE/ NUCLEOTIDYLTRANSFERASE
AT2G43360	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.0343	Unknown	BIO2 (BIOTIN AUXOTROPH 2) BIOTIN SYNTHASE
AT3G11270	Predicted Co-purification Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS	FSW = 0.3620	Unknown	MEE34 (MATERNAL EFFECT EMBRYO ARREST 34)
AT3G12670	Predicted Affinity Capture-MS	FSW = 0.0981	Unknown	EMB2742 (EMBRYO DEFECTIVE 2742) CTP SYNTHASE/ CATALYTIC
AT3G13235	Predicted Affinity Capture-Western	FSW = 0.0626	Unknown	UBIQUITIN FAMILY PROTEIN
AT3G13970	Predicted Affinity Capture-MS interaction prediction	FSW = 0.0923	Unknown	APG12B (AUTOPHAGY 12 B)
AT3G45590	Predicted Affinity Capture-MS	FSW = 0.0107	Unknown	ATSEN1 (SPLICING ENDONUCLEASE 1) NUCLEASE/ NUCLEIC ACID BINDING / TRNA-INTRON ENDONUCLEASE
AT3G57550	Predicted Affinity Capture-MS	FSW = 0.0191	Unknown	AGK2 (GUANYLATE KINASE) GUANYLATE KINASE
AT4G29040	Predicted Affinity Capture-MS Co-purification Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Co-purification	FSW = 0.3339	Unknown	RPT2A (REGULATORY PARTICLE AAA-ATPASE 2A) ATPASE
AT4G35620	Predicted Affinity Capture-Western two hybrid Affinity Capture-Western two hybrid Co-purification far western blotting	FSW = 0.0467	Unknown	CYCB22 (CYCLIN B22) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR
AT4G38630	Predicted Reconstituted Complex Co-purification Co-purification Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-Western Reconstituted Complex Affinity Capture-MS Affinity Capture-MS Synthetic Lethality Affinity Capture-Western Co-expression	FSW = 0.2486	Unknown	RPN10 (REGULATORY PARTICLE NON-ATPASE 10) PEPTIDE RECEPTOR
AT4G39520	Predicted Affinity Capture-MS interaction prediction	FSW = 0.0085	Unknown	GTP-BINDING PROTEIN PUTATIVE
AT5G02880	Predicted Affinity Capture-Western	FSW = 0.0723	Unknown	UPL4 UBIQUITIN-PROTEIN LIGASE
AT5G09900	Predicted Co-purification Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-Western interaction prediction Co-expression	FSW = 0.3641	Unknown	EMB2107 (EMBRYO DEFECTIVE 2107)
AT5G23540	Predicted Co-purification Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS interologs mapping Colocalization co-fractionation Co-fractionation Affinity Capture-Western Co-expression	FSW = 0.4009	Unknown	26S PROTEASOME REGULATORY SUBUNIT PUTATIVE
AT5G26110	Predicted Affinity Capture-MS interaction prediction Co-expression	FSW = 0.0584	Unknown	ATP BINDING / CATALYTIC/ PROTEIN KINASE
AT5G40440	Predicted Affinity Capture-MS interaction prediction	FSW = 0.0140	Unknown	ATMKK3 (ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE KINASE 3) MAP KINASE KINASE
AT5G41190	Predicted Affinity Capture-MS	FSW = 0.0465	Unknown	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NIN ONE BINDING (NOB1) ZN-RIBBON LIKE (INTERPROIPR014881) D-SITE 20S PRE-RRNA NUCLEASE (INTERPROIPR017117) HAS 855 BLAST HITS TO 653 PROTEINS IN 196 SPECIES ARCHAE - 53 BACTERIA - 16 METAZOA - 335 FUNGI - 168 PLANTS - 29 VIRUSES - 10 OTHER EUKARYOTES - 244 (SOURCE NCBI BLINK)
AT5G52820	Predicted Affinity Capture-MS	FSW = 0.0080	Unknown	WD-40 REPEAT FAMILY PROTEIN / NOTCHLESS PROTEIN PUTATIVE
AT5G67380	Predicted Affinity Capture-MS	FSW = 0.0171	Unknown	CKA1 (CASEIN KINASE ALPHA 1) KINASE
AT2G32730	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Co-purification Affinity Capture-MS Co-purification	FSW = 0.3158	Unknown	26S PROTEASOME REGULATORY SUBUNIT PUTATIVE
AT5G43010	Predicted Affinity Capture-MS Affinity Capture-MS Co-purification Co-purification Affinity Capture-MS	FSW = 0.3012	Unknown	RPT4A ATPASE
AT5G64830	Predicted Affinity Capture-MS	FSW = 0.0093	Unknown	PROGRAMMED CELL DEATH 2 C-TERMINAL DOMAIN-CONTAINING PROTEIN
AT1G65650	Predicted synthetic growth defect Affinity Capture-Western	FSW = 0.0783	Unknown	UCH2 UBIQUITIN THIOLESTERASE/ UBIQUITIN-SPECIFIC PROTEASE
AT2G46290	Predicted Affinity Capture-Western interologs mapping	FSW = 0.0399	Unknown	EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT 2 PUTATIVE / EIF-3 BETA PUTATIVE / EIF3I PUTATIVE
AT3G21280	Predicted synthetic growth defect Reconstituted Complex	FSW = 0.0820	Unknown	UBP7 (UBIQUITIN-SPECIFIC PROTEASE 7) UBIQUITIN THIOLESTERASE/ UBIQUITIN-SPECIFIC PROTEASE
AT1G64750	Predicted Affinity Capture-MS Affinity Capture-MS Synthetic Lethality	FSW = 0.2535	Unknown	ATDSS1(I) (ARABIDOPSIS THALIANA DELETION OF SUV3 SUPRESSOR 1(I))
AT3G49660	Predicted Affinity Capture-MS interaction prediction	FSW = 0.0281	Unknown	TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT1G54210	Predicted Affinity Capture-MS	FSW = 0.0917	Unknown	ATG12A (AUTOPHAGY 12 A) PROTEIN BINDING
AT1G12040	Predicted Affinity Capture-MS	FSW = 0.0140	Unknown	LRX1 (LEUCINE-RICH REPEAT/EXTENSIN 1) HISTIDINE PHOSPHOTRANSFER KINASE/ PROTEIN BINDING / STRUCTURAL CONSTITUENT OF CELL WALL
AT1G10730	Predicted Affinity Capture-MS	FSW = 0.0157	Unknown	CLATHRIN ADAPTOR COMPLEXES MEDIUM SUBUNIT FAMILY PROTEIN
AT1G30820	Predicted Affinity Capture-MS	FSW = 0.1416	Unknown	CTP SYNTHASE PUTATIVE / UTP--AMMONIA LIGASE PUTATIVE
AT3G19020	Predicted interaction prediction	FSW = 0.0189	Unknown	LEUCINE-RICH REPEAT FAMILY PROTEIN / EXTENSIN FAMILY PROTEIN
AT4G28088	Predicted interaction prediction	FSW = 0.0191	Unknown	HYDROPHOBIC PROTEIN PUTATIVE / LOW TEMPERATURE AND SALT RESPONSIVE PROTEIN PUTATIVE
AT4G28470	Predicted Phylogenetic profile method	FSW = 0.1152	Unknown	RPN1B (26S PROTEASOME REGULATORY SUBUNIT S2 1B) BINDING / ENZYME REGULATOR

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from

Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment

Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment

Class C: Same as Class A but the PPI is predicted

Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB

Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

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AT2G20580 - ( RPN1A (26S PROTEASOME REGULATORY SUBUNIT S2 1A) binding / enzyme regulator )

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