Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G20800 - ( NDB4 (NAD(P)H dehydrogenase B4) NADH dehydrogenase )
25 Proteins interacs with AT2G20800Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT2G29990 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.0375
| Class C:unclearperoxisomemitochondrion | NDA2 (ALTERNATIVE NAD(P)H DEHYDROGENASE 2) FAD BINDING / NADH DEHYDROGENASE/ OXIDOREDUCTASE |
AT4G05020 | PredictedGene fusion methodPhylogenetic profile methodCo-expression | FSW = 0.3963
| Class C:unclearmitochondrion | NDB2 (NAD(P)H DEHYDROGENASE B2) FAD BINDING / DISULFIDE OXIDOREDUCTASE/ OXIDOREDUCTASE |
AT4G28220 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.1667
| Class C:peroxisomemitochondrion | NDB1 (NAD(P)H DEHYDROGENASE B1) NADH DEHYDROGENASE/ DISULFIDE OXIDOREDUCTASE |
AT1G07180 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.0481
| Class C:peroxisomemitochondrion | NDA1 (ALTERNATIVE NAD(P)H DEHYDROGENASE 1) NADH DEHYDROGENASE |
AT3G47520 | PredictedPhenotypic Enhancement | FSW = 0.0447
| Class C:mitochondrion | MDH (MALATE DEHYDROGENASE) L-MALATE DEHYDROGENASE/ BINDING / CATALYTIC/ MALATE DEHYDROGENASE/ OXIDOREDUCTASE/ OXIDOREDUCTASE ACTING ON THE CH-OH GROUP OF DONORS NAD OR NADP AS ACCEPTOR |
AT2G21170 | Predictedsynthetic growth defect | FSW = 0.0889
| Class C:mitochondrion | TIM (TRIOSEPHOSPHATE ISOMERASE) CATALYTIC/ TRIOSE-PHOSPHATE ISOMERASE |
AT3G29800 | Predictedtwo hybrid | FSW = 0.1212
| Class C:mitochondrion | AAA-TYPE ATPASE FAMILY |
AT3G10370 | PredictedPhenotypic Enhancement | FSW = 0.0485
| Class C:mitochondrion | SDP6 (SUGAR-DEPENDENT 6) GLYCEROL-3-PHOSPHATE DEHYDROGENASE |
AT1G55920 | PredictedPhenotypic Enhancement | FSW = 0.0571
| Unknown | ATSERAT21 (SERINE ACETYLTRANSFERASE 21) SERINE O-ACETYLTRANSFERASE |
AT3G54670 | PredictedSynthetic Rescue | FSW = 0.0433
| Unknown | TTN8 (TITAN8) ATP BINDING / TRANSPORTER |
AT3G13560 | PredictedAffinity Capture-Westerntwo hybrid | FSW = 0.0314
| Unknown | GLYCOSYL HYDROLASE FAMILY 17 PROTEIN |
AT1G55690 | Predictedtwo hybrid | FSW = 0.0226
| Unknown | SEC14 CYTOSOLIC FACTOR FAMILY PROTEIN / PHOSPHOGLYCERIDE TRANSFER FAMILY PROTEIN |
AT3G19930 | PredictedPhenotypic Enhancementinterologs mappingPhenotypic Enhancement | FSW = 0.1369
| Unknown | STP4 (SUGAR TRANSPORTER 4) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ MONOSACCHARIDE TRANSMEMBRANE TRANSPORTER/ SUCROSEHYDROGEN SYMPORTER/ SUGARHYDROGEN SYMPORTER |
AT2G34450 | Predictedtwo hybrid | FSW = 0.1004
| Unknown | HIGH MOBILITY GROUP (HMG1/2) FAMILY PROTEIN |
AT1G73690 | PredictedSynthetic Rescue | FSW = 0.0949
| Unknown | CDKD11 (CYCLIN-DEPENDENT KINASE D11) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT3G13790 | Predictedtwo hybrid | FSW = 0.0315
| Unknown | ATBFRUCT1 BETA-FRUCTOFURANOSIDASE/ HYDROLASE HYDROLYZING O-GLYCOSYL COMPOUNDS |
AT1G76920 | PredictedPhenotypic Enhancement | FSW = 0.0660
| Unknown | F-BOX FAMILY PROTEIN (FBX3) |
AT4G26510 | Predictedinterologs mapping | FSW = 0.0424
| Unknown | ATP BINDING / KINASE/ PHOSPHOTRANSFERASE ALCOHOL GROUP AS ACCEPTOR / URACIL PHOSPHORIBOSYLTRANSFERASE |
AT5G52200 | PredictedPhenotypic Enhancement | FSW = 0.1543
| Unknown | UNKNOWN PROTEIN |
AT5G19090 | Predictedtwo hybrid | FSW = 0.0318
| Unknown | HEAVY-METAL-ASSOCIATED DOMAIN-CONTAINING PROTEIN |
AT5G55080 | PredictedAffinity Capture-MS | FSW = 0.0163
| Unknown | ATRAN4 (RAS-RELATED NUCLEAR PROTEIN 4) GTP BINDING / GTPASE/ PROTEIN BINDING |
AT2G16950 | PredictedAffinity Capture-MS | FSW = 0.0129
| Unknown | TRN1 (TRANSPORTIN 1) PROTEIN TRANSPORTER |
AT1G53880 | PredictedAffinity Capture-MS | FSW = 0.0270
| Unknown | GTP BINDING / TRANSLATION INITIATION FACTOR |
AT1G50370 | PredictedAffinity Capture-MS | FSW = 0.0091
| Unknown | SERINE/THREONINE PROTEIN PHOSPHATASE PUTATIVE |
AT4G21490 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.0593
| Unknown | NDB3 NADH DEHYDROGENASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454