Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G20890 - ( PSB29 )

7 Proteins interacs with AT2G20890
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT5G19620

Experimental

co-fractionation

Co-fractionation

FSW = 0.0937

Class A:

plastid

Class B:

unclear

Class D:

plastid (p = 0.78)

nucleus (p = 0.78)

mitochondrion (p = 0.82)

 OEP80 (OUTER ENVELOPE PROTEIN OF 80 KDA)
AT1G35670

Experimental

two hybrid

FSW = 0.0696

Class B:

plastid

plasma membrane

nucleus

cytosol

Class D:

plastid (p = 0.78)

 ATCDPK2 (CALCIUM-DEPENDENT PROTEIN KINASE 2) CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE
AT2G26300

Experimental

pull down

two hybrid

Reconstituted Complex

Affinity Capture-Western

fluorescence acceptor donor pair

coimmunoprecipitation

FSW = 0.0186

Class B:

plastid

plasma membrane

 GP ALPHA 1 (G PROTEIN ALPHA SUBUNIT 1) GTP BINDING / GTPASE/ CHANNEL REGULATOR/ SIGNAL TRANSDUCER
AT4G09570

Experimental

two hybrid

FSW = 0.0461

Class B:

plastid

nucleus

cytosol

Class D:

plastid (p = 0.78)

 CPK4 CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE
AT2G28900

Predicted

Shared biological function

Co-expression

FSW = 0.1131

Class C:

plastid

 ATOEP16-1 (OUTER PLASTID ENVELOPE PROTEIN 16-1) P-P-BOND-HYDROLYSIS-DRIVEN PROTEIN TRANSMEMBRANE TRANSPORTER/ PROTEIN TRANSPORTER
AT5G52440

Predicted

Shared biological function

Co-expression

FSW = 0.2158

Class C:

plastid

 HCF106 PROTON MOTIVE FORCE DEPENDENT PROTEIN TRANSMEMBRANE TRANSPORTER
AT5G03940

Predicted

Shared biological function

Co-expression

FSW = 0.0704

Class C:

plastid

 CPSRP54 (CHLOROPLAST SIGNAL RECOGNITION PARTICLE 54 KDA SUBUNIT) 7S RNA BINDING / GTP BINDING / MRNA BINDING / SIGNAL SEQUENCE BINDING

Downloads

Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

Learn more

How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

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