Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Welcome to AtPIN
AtPIN will be upgraded. Please send your suggestions here
AT2G21890 - ( CAD3 (CINNAMYL ALCOHOL DEHYDROGENASE HOMOLOG 3) binding / catalytic/ oxidoreductase/ zinc ion binding )
28 Proteins interacs with AT2G21890Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT2G37270 | PredictedAffinity Capture-Western | FSW = 0.0812
| Unknown | ATRPS5B (RIBOSOMAL PROTEIN 5B) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT3G62870 | Predictedsynthetic growth defect | FSW = 0.0187
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
AT5G01410 | PredictedSynthetic Lethalitysynthetic growth defect | FSW = 0.1258
| Unknown | RSR4 (REDUCED SUGAR RESPONSE 4) PROTEIN HETERODIMERIZATION/ PROTEIN HOMODIMERIZATION |
AT1G16030 | PredictedSynthetic LethalityPhenotypic Enhancement | FSW = 0.0877
| Unknown | HSP70B (HEAT SHOCK PROTEIN 70B) ATP BINDING |
AT4G34230 | PredictedPhylogenetic profile method | FSW = 0.3537
| Unknown | ATCAD5 (CINNAMYL ALCOHOL DEHYDROGENASE 5) CINNAMYL-ALCOHOL DEHYDROGENASE |
AT2G34450 | PredictedPhenotypic Enhancement | FSW = 0.1778
| Unknown | HIGH MOBILITY GROUP (HMG1/2) FAMILY PROTEIN |
AT3G13445 | PredictedPhenotypic Suppression | FSW = 0.0299
| Unknown | TBP1 (TATA BINDING PROTEIN 1) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ BINDING |
AT1G53530 | PredictedSynthetic Lethality | FSW = 0.1983
| Unknown | SIGNAL PEPTIDASE I FAMILY PROTEIN |
AT1G29330 | PredictedPhenotypic Enhancement | FSW = 0.1027
| Unknown | ERD2 (ENDOPLASMIC RETICULUM RETENTION DEFECTIVE 2) KDEL SEQUENCE BINDING / RECEPTOR |
AT5G63960 | Predictedinterologs mapping | FSW = 0.1375
| Unknown | EMB2780 (EMBRYO DEFECTIVE 2780) DNA BINDING / DNA-DIRECTED DNA POLYMERASE/ NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
AT1G73810 | Predictedtwo hybridAffinity Capture-MS | FSW = 0.3459
| Unknown | UNKNOWN PROTEIN |
AT1G49520 | PredictedPhenotypic Enhancement | FSW = 0.1899
| Unknown | SWIB COMPLEX BAF60B DOMAIN-CONTAINING PROTEIN |
AT1G55810 | PredictedSynthetic Lethality | FSW = 0.0910
| Unknown | URACIL PHOSPHORIBOSYLTRANSFERASE PUTATIVE / UMP PYROPHOSPHORYLASE PUTATIVE / UPRTASE PUTATIVE |
AT1G61670 | PredictedPhenotypic Enhancement | FSW = 0.1134
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN LOCATED IN ENDOMEMBRANE SYSTEM INTEGRAL TO MEMBRANE CONTAINS INTERPRO DOMAIN/S TRANSMEMBRANE RECEPTOR EUKARYOTA (INTERPROIPR009637) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G109801) HAS 473 BLAST HITS TO 471 PROTEINS IN 125 SPECIES ARCHAE - 0 BACTERIA - 2 METAZOA - 242 FUNGI - 99 PLANTS - 92 VIRUSES - 0 OTHER EUKARYOTES - 38 (SOURCE NCBI BLINK) |
AT1G76920 | PredictedPhenotypic Enhancement | FSW = 0.0927
| Unknown | F-BOX FAMILY PROTEIN (FBX3) |
AT2G23070 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSPhenotypic Enhancementtwo hybridco-fractionationCo-fractionation | FSW = 0.1330
| Unknown | CASEIN KINASE II ALPHA CHAIN PUTATIVE |
AT2G29680 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MStwo hybridco-fractionationCo-fractionation | FSW = 0.0972
| Unknown | CDC6 (CELL DIVISION CONTROL 6) |
AT3G06460 | PredictedPhenotypic Enhancement | FSW = 0.0354
| Unknown | GNS1/SUR4 MEMBRANE FAMILY PROTEIN |
AT5G16290 | PredictedAffinity Capture-MSAffinity Capture-MStwo hybrid | FSW = 0.1646
| Unknown | ACETOLACTATE SYNTHASE SMALL SUBUNIT PUTATIVE |
AT5G46280 | Predictedtwo hybridAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-Westerninterologs mappingAffinity Capture-MSCo-purificationAffinity Capture-MSAffinity Capture-MSSynthetic Lethalityinterologs mappingCo-purificationCo-crystal Structureco-fractionationCo-fractionation | FSW = 0.1952
| Unknown | DNA REPLICATION LICENSING FACTOR PUTATIVE |
AT5G57190 | PredictedPhenotypic Enhancement | FSW = 0.0857
| Unknown | PSD2 (PHOSPHATIDYLSERINE DECARBOXYLASE 2) PHOSPHATIDYLSERINE DECARBOXYLASE |
AT2G21730 | PredictedGene neighbors methodPhylogenetic profile method | FSW = 0.3158
| Unknown | CAD2 (CINNAMYL ALCOHOL DEHYDROGENASE HOMOLOG 2) BINDING / CATALYTIC/ OXIDOREDUCTASE/ ZINC ION BINDING |
AT1G72680 | PredictedPhylogenetic profile method | FSW = 0.1640
| Unknown | CINNAMYL-ALCOHOL DEHYDROGENASE PUTATIVE |
AT4G39330 | PredictedPhylogenetic profile method | FSW = 0.0632
| Unknown | CAD9 (CINNAMYL ALCOHOL DEHYDROGENASE 9) BINDING / CATALYTIC/ OXIDOREDUCTASE/ ZINC ION BINDING |
AT4G37980 | PredictedPhylogenetic profile method | FSW = 0.4263
| Unknown | ELI3-1 (ELICITOR-ACTIVATED GENE 3-1) BINDING / CATALYTIC/ OXIDOREDUCTASE/ ZINC ION BINDING |
AT4G37990 | PredictedPhylogenetic profile method | FSW = 0.3876
| Unknown | ELI3-2 (ELICITOR-ACTIVATED GENE 3-2) ARYL-ALCOHOL DEHYDROGENASE/ MANNITOL DEHYDROGENASE |
AT3G19450 | PredictedPhylogenetic profile method | FSW = 0.3945
| Unknown | ATCAD4 CINNAMYL-ALCOHOL DEHYDROGENASE |
AT4G37970 | PredictedPhylogenetic profile method | FSW = 0.4488
| Unknown | CAD6 (CINNAMYL ALCOHOL DEHYDROGENASE 6) BINDING / CATALYTIC/ OXIDOREDUCTASE/ ZINC ION BINDING |
Downloads
Quick help
Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454