Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Welcome to AtPIN
AtPIN will be upgraded. Please send your suggestions here
AT2G22040 - ( transducin family protein / WD-40 repeat family protein )
53 Proteins interacs with AT2G22040Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G16480 | PredictedAffinity Capture-MS | FSW = 0.0502
| Unknown | MPPALPHA (MITOCHONDRIAL PROCESSING PEPTIDASE ALPHA SUBUNIT) CATALYTIC/ METAL ION BINDING / METALLOENDOPEPTIDASE/ ZINC ION BINDING |
AT3G18140 | PredictedPhylogenetic profile method | FSW = 0.1071
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT1G56190 | PredictedAffinity Capture-MS | FSW = 0.0087
| Unknown | PHOSPHOGLYCERATE KINASE PUTATIVE |
AT5G25400 | PredictedAffinity Capture-MS | FSW = 0.0239
| Unknown | PHOSPHATE TRANSLOCATOR-RELATED |
AT1G61520 | PredictedAffinity Capture-MS | FSW = 0.0119
| Unknown | LHCA3 CHLOROPHYLL BINDING |
AT3G18790 | PredictedAffinity Capture-MS | FSW = 0.1029
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CHLOROPLAST EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S ISY1-LIKE SPLICING (INTERPROIPR009360) HAS 1075 BLAST HITS TO 879 PROTEINS IN 176 SPECIES ARCHAE - 8 BACTERIA - 11 METAZOA - 379 FUNGI - 177 PLANTS - 27 VIRUSES - 9 OTHER EUKARYOTES - 464 (SOURCE NCBI BLINK) |
AT3G18190 | Predictedinterologs mapping | FSW = 0.0615
| Unknown | CHAPERONIN PUTATIVE |
AT3G55810 | PredictedAffinity Capture-MS | FSW = 0.0712
| Unknown | PYRUVATE KINASE PUTATIVE |
AT5G40370 | PredictedAffinity Capture-MS | FSW = 0.0480
| Unknown | GLUTAREDOXIN PUTATIVE |
AT5G56290 | PredictedAffinity Capture-MS | FSW = 0.0184
| Unknown | PEX5 (PEROXIN 5) PEROXISOME MATRIX TARGETING SIGNAL-1 BINDING / PROTEIN BINDING |
AT5G27720 | PredictedAffinity Capture-MS | FSW = 0.0646
| Unknown | EMB1644 (EMBRYO DEFECTIVE 1644) |
AT2G30050 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.0087
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT5G47630 | PredictedAffinity Capture-MS | FSW = 0.0224
| Unknown | MTACP3 (MITOCHONDRIAL ACYL CARRIER PROTEIN 3) ACYL CARRIER/ COFACTOR BINDING |
AT2G47490 | PredictedGene fusion method | FSW = 0.0789
| Unknown | MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN |
AT5G02730 | PredictedAffinity Capture-MS | FSW = 0.0536
| Unknown | ALLERGEN V5/TPX-1-RELATED FAMILY PROTEIN |
AT3G02530 | Predictedinterologs mapping | FSW = 0.0684
| Unknown | CHAPERONIN PUTATIVE |
AT5G55160 | PredictedAffinity Capture-MS | FSW = 0.0460
| Unknown | SUMO2 (SMALL UBIQUITIN-LIKE MODIFIER 2) PROTEIN BINDING / PROTEIN TAG |
AT3G20050 | Predictedinterologs mapping | FSW = 0.0393
| Unknown | ATTCP-1 ATP BINDING / PROTEIN BINDING / UNFOLDED PROTEIN BINDING |
AT1G44820 | PredictedAffinity Capture-MSSynthetic LethalityAffinity Capture-MS | FSW = 0.1603
| Unknown | AMINOACYLASE PUTATIVE / N-ACYL-L-AMINO-ACID AMIDOHYDROLASE PUTATIVE |
AT1G09270 | PredictedAffinity Capture-MS | FSW = 0.0345
| Unknown | IMPA-4 (IMPORTIN ALPHA ISOFORM 4) BINDING / PROTEIN TRANSPORTER |
AT1G26140 | PredictedAffinity Capture-MS | FSW = 0.1610
| Unknown | UNKNOWN PROTEIN |
AT1G47830 | PredictedAffinity Capture-MS | FSW = 0.0266
| Unknown | CLATHRIN COAT ASSEMBLY PROTEIN PUTATIVE |
AT1G53900 | PredictedAffinity Capture-MS | FSW = 0.0361
| Unknown | GTP BINDING / TRANSLATION INITIATION FACTOR |
AT1G79910 | PredictedAffinity Capture-MS | FSW = 0.0632
| Unknown | UNKNOWN PROTEIN |
AT2G03040 | PredictedAffinity Capture-MS | FSW = 0.0175
| Unknown | TRANSMEMBRANE PROTEIN-RELATED |
AT2G14560 | PredictedAffinity Capture-MS | FSW = 0.0690
| Unknown | LURP1 (LATE UPREGULATED IN RESPONSE TO HYALOPERONOSPORA PARASITICA) |
AT2G14880 | PredictedAffinity Capture-MS | FSW = 0.0353
| Unknown | SWIB COMPLEX BAF60B DOMAIN-CONTAINING PROTEIN |
AT2G17620 | PredictedAffinity Capture-MS | FSW = 0.0253
| Unknown | CYCB21 (CYCLIN B21) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT2G34180 | PredictedAffinity Capture-MS | FSW = 0.0229
| Unknown | CIPK13 (CBL-INTERACTING PROTEIN KINASE 13) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT2G44750 | PredictedAffinity Capture-MS | FSW = 0.0172
| Unknown | TPK2 (THIAMIN PYROPHOSPHOKINASE 2) THIAMIN DIPHOSPHOKINASE |
AT2G44820 | PredictedAffinity Capture-MS | FSW = 0.0893
| Unknown | UNKNOWN PROTEIN |
AT3G12200 | PredictedAffinity Capture-MS | FSW = 0.0217
| Unknown | ATNEK7 (NIMA-RELATED KINASE7) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
AT3G18660 | PredictedAffinity Capture-MS | FSW = 0.0351
| Unknown | PGSIP1 (PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN 1) TRANSFERASE TRANSFERRING GLYCOSYL GROUPS |
AT3G27580 | PredictedAffinity Capture-MS | FSW = 0.0298
| Unknown | ATPK7 KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT3G44590 | PredictedAffinity Capture-MS | FSW = 0.0345
| Unknown | 60S ACIDIC RIBOSOMAL PROTEIN P2 (RPP2D) |
AT4G04885 | PredictedAffinity Capture-MS | FSW = 0.0180
| Unknown | PCFS4 (PCF11P-SIMILAR PROTEIN 4) ZINC ION BINDING |
AT4G04955 | PredictedAffinity Capture-MS | FSW = 0.0301
| Unknown | ATALN (ARABIDOPSIS ALLANTOINASE) ALLANTOINASE/ HYDROLASE |
AT4G14670 | PredictedAffinity Capture-MS | FSW = 0.0458
| Unknown | CLPB2 ATP BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING |
AT4G30530 | PredictedAffinity Capture-MS | FSW = 0.0644
| Unknown | DEFENSE-RELATED PROTEIN PUTATIVE |
AT5G13400 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0361
| Unknown | PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN |
AT5G26110 | PredictedAffinity Capture-MS | FSW = 0.0263
| Unknown | ATP BINDING / CATALYTIC/ PROTEIN KINASE |
AT2G33560 | PredictedAffinity Capture-MS | FSW = 0.0231
| Unknown | SPINDLE CHECKPOINT PROTEIN-RELATED |
AT3G08850 | PredictedAffinity Capture-MSAffinity Capture-Western | FSW = 0.0634
| Unknown | RAPTOR1 NUCLEOTIDE BINDING / PROTEIN BINDING |
AT1G50030 | PredictedAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSAffinity Capture-WesternCo-purification | FSW = 0.0574
| Unknown | TOR (TARGET OF RAPAMYCIN) 1-PHOSPHATIDYLINOSITOL-3-KINASE/ PROTEIN BINDING |
AT1G14480 | PredictedAffinity Capture-MSAffinity Capture-Western | FSW = 0.0789
| Unknown | PROTEIN BINDING |
AT3G03960 | Predictedinterologs mapping | FSW = 0.0893
| Unknown | CHAPERONIN PUTATIVE |
AT3G49660 | PredictedPhylogenetic profile method | FSW = 0.0087
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT4G05320 | PredictedGene fusion method | FSW = 0.0454
| Unknown | UBQ10 (POLYUBIQUITIN 10) PROTEIN BINDING |
AT5G59160 | PredictedGene fusion method | FSW = 0.0320
| Unknown | TOPP2 PROTEIN SERINE/THREONINE PHOSPHATASE |
AT2G17845 | PredictedGene fusion method | FSW = 0.0290
| Unknown | SHORT-CHAIN DEHYDROGENASE/REDUCTASE (SDR) FAMILY PROTEIN |
AT1G24470 | PredictedGene fusion method | FSW = 0.0204
| Unknown | SHORT-CHAIN DEHYDROGENASE/REDUCTASE (SDR) FAMILY PROTEIN |
AT3G46820 | PredictedGene fusion method | FSW = 0.0690
| Unknown | TOPP5 PROTEIN SERINE/THREONINE PHOSPHATASE |
AT5G11400 | PredictedGene fusion method | FSW = 0.0789
| Unknown | PROTEIN KINASE-RELATED |
Downloads
Quick help
Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454