Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G22360 - ( DNAJ heat shock family protein )

43 Proteins interacs with AT2G22360
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT5G08670

Predicted

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FSW = 0.0702

Class C:

plastid

 ATP BINDING / HYDROGEN ION TRANSPORTING ATP SYNTHASE ROTATIONAL MECHANISM
AT5G09590

Predicted

interologs mapping

interaction prediction

FSW = 0.0088

Class C:

plastid

 MTHSC70-2 (MITOCHONDRIAL HSP70 2) ATP BINDING
AT5G41790

Predicted

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FSW = 0.0834

Class C:

plastid

 CIP1 (COP1-INTERACTIVE PROTEIN 1) PROTEIN BINDING
AT2G33800

Predicted

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FSW = 0.2963

Class C:

plastid

 RIBOSOMAL PROTEIN S5 FAMILY PROTEIN
AT3G63490

Predicted

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FSW = 0.0794

Class C:

plastid

 RIBOSOMAL PROTEIN L1 FAMILY PROTEIN
AT3G10690

Predicted

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FSW = 0.2108

Class C:

plastid

 DNA GYRASE SUBUNIT A FAMILY PROTEIN
AT1G74260

Predicted

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FSW = 0.0232

Class C:

plastid

 PUR4 (PURINE BIOSYNTHESIS 4) ATP BINDING / CATALYTIC/ PHOSPHORIBOSYLFORMYLGLYCINAMIDINE SYNTHASE
AT3G17170

Predicted

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FSW = 0.1201

Class C:

plastid

 RFC3 (REGULATOR OF FATTY-ACID COMPOSITION 3) STRUCTURAL CONSTITUENT OF RIBOSOME
AT1G79050

Predicted

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FSW = 0.1600

Class C:

plastid

 DNA REPAIR PROTEIN RECA
AT2G25830

Predicted

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FSW = 0.1074

Class C:

plastid

 YEBC-RELATED
AT3G13120

Predicted

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FSW = 0.1452

Class C:

plastid

 30S RIBOSOMAL PROTEIN S10 CHLOROPLAST PUTATIVE
AT5G14320

Predicted

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FSW = 0.0684

Class C:

plastid

 30S RIBOSOMAL PROTEIN S13 CHLOROPLAST (CS13)
AT4G39960

Predicted

Enriched domain pair

Phylogenetic profile method

Co-expression

FSW = 0.1600

Class C:

plastid

 DNAJ HEAT SHOCK FAMILY PROTEIN
AT1G17220

Predicted

pull down

FSW = 0.1152

Class C:

plastid

 FUG1 (FU-GAERI1) TRANSLATION INITIATION FACTOR
AT3G18680

Predicted

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FSW = 0.2000

Class C:

plastid

 ASPARTATE/GLUTAMATE/URIDYLATE KINASE FAMILY PROTEIN
AT4G15530

Predicted

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FSW = 0.0203

Class C:

plastid

 PPDK (PYRUVATE ORTHOPHOSPHATE DIKINASE) KINASE/ PYRUVATE PHOSPHATE DIKINASE
AT1G24240

Predicted

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FSW = 0.1512

Class C:

plastid

 RIBOSOMAL PROTEIN L19 FAMILY PROTEIN
AT5G49030

Predicted

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FSW = 0.0317

Class C:

plastid

 OVA2 (OVULE ABORTION 2) ATP BINDING / AMINOACYL-TRNA LIGASE/ CATALYTIC/ ISOLEUCINE-TRNA LIGASE/ NUCLEOTIDE BINDING
AT1G17745

Predicted

interaction prediction

FSW = 0.0067

Class C:

plastid

 PGDH (3-PHOSPHOGLYCERATE DEHYDROGENASE) PHOSPHOGLYCERATE DEHYDROGENASE
ATCG00160Predicted

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FSW = 0.1481

Class C:

plastid

 CHLOROPLAST RIBOSOMAL PROTEIN S2
ATCG00180Predicted

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FSW = 0.1294

Class C:

plastid

 RNA POLYMERASE BETA SUBUNIT-1
ATCG00330Predicted

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FSW = 0.1130

Class C:

plastid

 30S CHLOROPLAST RIBOSOMAL PROTEIN S14
ATCG00810Predicted

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FSW = 0.1255

Class C:

plastid

 ENCODES A CHLOROPLAST RIBOSOMAL PROTEIN L22 A CONSTITUENT OF THE LARGE SUBUNIT OF THE RIBOSOMAL COMPLEX
AT4G37910

Predicted

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FSW = 0.0959

Unknown

 MTHSC70-1 (MITOCHONDRIAL HEAT SHOCK PROTEIN 70-1) ATP BINDING
AT5G55070

Predicted

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FSW = 0.0383

Unknown

 2-OXOACID DEHYDROGENASE FAMILY PROTEIN
AT1G53000

Predicted

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FSW = 0.0952

Unknown

 CYTIDYLYLTRANSFERASE FAMILY
AT2G36880

Predicted

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FSW = 0.1231

Unknown

 MAT3 (METHIONINE ADENOSYLTRANSFERASE 3) COPPER ION BINDING / METHIONINE ADENOSYLTRANSFERASE
AT4G17270

Predicted

interaction prediction

FSW = 0.0193

Unknown

 MO25 FAMILY PROTEIN
AT4G38680

Predicted

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FSW = 0.1882

Unknown

 GRP2 (GLYCINE RICH PROTEIN 2) DOUBLE-STRANDED DNA BINDING / MRNA BINDING / NUCLEIC ACID BINDING / SINGLE-STRANDED DNA BINDING
AT3G50670

Predicted

interaction prediction

FSW = 0.0058

Unknown

 U1-70K (U1 SMALL NUCLEAR RIBONUCLEOPROTEIN-70K) RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING
AT3G09210

Predicted

pull down

FSW = 0.2758

Unknown

 PTAC13 (PLASTID TRANSCRIPTIONALLY ACTIVE13) TRANSCRIPTION ELONGATION REGULATOR
AT1G28210

Predicted

Enriched domain pair

Phylogenetic profile method

Co-expression

FSW = 0.0429

Unknown

 ATJ1 HEAT SHOCK PROTEIN BINDING / UNFOLDED PROTEIN BINDING
AT4G02930

Predicted

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FSW = 0.1303

Unknown

 ELONGATION FACTOR TU PUTATIVE / EF-TU PUTATIVE
AT3G10370

Predicted

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FSW = 0.0818

Unknown

 SDP6 (SUGAR-DEPENDENT 6) GLYCEROL-3-PHOSPHATE DEHYDROGENASE
AT2G04560Predicted

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FSW = 0.1516

Unknown

 TRANSFERASE TRANSFERRING GLYCOSYL GROUPS
AT3G22310

Predicted

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FSW = 0.2080

Unknown

 PMH1 (PUTATIVE MITOCHONDRIAL RNA HELICASE 1) ATP-DEPENDENT HELICASE/ DNA BINDING / RNA BINDING
AT3G24090

Predicted

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FSW = 0.0120

Unknown

 GLUTAMINE-FRUCTOSE-6-PHOSPHATE TRANSAMINASE (ISOMERIZING)/ SUGAR BINDING / TRANSAMINASE
AT4G21220

Predicted

pull down

FSW = 0.1872

Unknown

 BACTERIAL TRANSFERASE HEXAPEPTIDE REPEAT-CONTAINING PROTEIN
AT4G31870

Predicted

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FSW = 0.0667

Unknown

 ATGPX7 (GLUTATHIONE PEROXIDASE 7) GLUTATHIONE PEROXIDASE
AT4G04880

Predicted

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FSW = 0.0784

Unknown

 ADENOSINE/AMP DEAMINASE FAMILY PROTEIN
AT5G23535

Predicted

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FSW = 0.0993

Unknown

 KOW DOMAIN-CONTAINING PROTEIN
AT4G26780

Predicted

interaction prediction

FSW = 0.1978

Unknown

 AR192 ADENYL-NUCLEOTIDE EXCHANGE FACTOR/ CHAPERONE BINDING / PROTEIN BINDING / PROTEIN HOMODIMERIZATION
AT3G21470

Predicted

Gene fusion method

FSW = 0.0268

Unknown

 PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN

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Fasta sequences:

Proteins

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

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