Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G22425 - ( peptidase )
39 Proteins interacs with AT2G22425Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G15200 | PredictedAffinity Capture-MS | FSW = 0.0084
| Unknown | 40S RIBOSOMAL PROTEIN S9 (RPS9B) |
AT1G01100 | PredictedAffinity Capture-MS | FSW = 0.0173
| Unknown | 60S ACIDIC RIBOSOMAL PROTEIN P1 (RPP1A) |
AT3G28710 | Predictedtwo hybrid | FSW = 0.0047
| Unknown | H+-TRANSPORTING TWO-SECTOR ATPASE PUTATIVE |
AT1G73430 | PredictedAffinity Capture-MS | FSW = 0.0173
| Unknown | SEC34-LIKE FAMILY PROTEIN |
AT4G01320 | Predictedtwo hybrid | FSW = 0.0675
| Unknown | ATSTE24 ENDOPEPTIDASE/ METALLOENDOPEPTIDASE |
AT1G58030 | Predictedtwo hybrid | FSW = 0.0606
| Unknown | CAT2 (CATIONIC AMINO ACID TRANSPORTER 2) AMINO ACID TRANSMEMBRANE TRANSPORTER |
AT5G13710 | Predictedtwo hybrid | FSW = 0.0278
| Unknown | SMT1 (STEROL METHYLTRANSFERASE 1) STEROL 24-C-METHYLTRANSFERASE |
AT1G14320 | PredictedAffinity Capture-MS | FSW = 0.0150
| Unknown | SAC52 (SUPPRESSOR OF ACAULIS 52) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT1G07790 | PredictedAffinity Capture-MS | FSW = 0.0137
| Unknown | HTB1 DNA BINDING |
AT1G07420 | Predictedtwo hybrid | FSW = 0.1582
| Unknown | SMO2-1 (STEROL 4-ALPHA-METHYL-OXIDASE 2-1) 4-ALPHA-METHYL-DELTA7-STEROL-4ALPHA-METHYL OXIDASE/ C-4 METHYLSTEROL OXIDASE |
AT1G79940 | Predictedinterologs mappingtwo hybrid | FSW = 0.1079
| Unknown | ATERDJ2A HEAT SHOCK PROTEIN BINDING / UNFOLDED PROTEIN BINDING |
AT1G52600 | Predictedinterologs mappinginterologs mappingAffinity Capture-MSCo-purificationinterologs mappingPhenotypic EnhancementSynthetic Lethalitytwo hybridCo-expression | FSW = 0.0926
| Unknown | SIGNAL PEPTIDASE PUTATIVE |
AT3G55360 | PredictedAffinity Capture-MS | FSW = 0.1356
| Unknown | CER10 3-OXO-5-ALPHA-STEROID 4-DEHYDROGENASE/ FATTY ACID ELONGASE/ TRANS-2-ENOYL-COA REDUCTASE (NADPH) |
AT2G37600 | PredictedAffinity Capture-MS | FSW = 0.0224
| Unknown | 60S RIBOSOMAL PROTEIN L36 (RPL36A) |
AT1G05500 | PredictedAffinity Capture-MS | FSW = 0.0272
| Unknown | NTMC2T21 |
AT4G16830 | PredictedAffinity Capture-MS | FSW = 0.0109
| Unknown | NUCLEAR RNA-BINDING PROTEIN (RGGA) |
AT1G29330 | Predictedtwo hybrid | FSW = 0.0109
| Unknown | ERD2 (ENDOPLASMIC RETICULUM RETENTION DEFECTIVE 2) KDEL SEQUENCE BINDING / RECEPTOR |
AT3G05230 | PredictedAffinity Capture-MS | FSW = 0.0473
| Unknown | SIGNAL PEPTIDASE SUBUNIT FAMILY PROTEIN |
AT2G39630 | Predictedtwo hybrid | FSW = 0.0517
| Unknown | GLYCOSYL TRANSFERASE FAMILY 2 PROTEIN |
AT1G57550 | Predictedtwo hybrid | FSW = 0.0226
| Unknown | HYDROPHOBIC PROTEIN PUTATIVE / LOW TEMPERATURE AND SALT RESPONSIVE PROTEIN PUTATIVE |
AT1G08880 | PredictedAffinity Capture-MS | FSW = 0.0140
| Unknown | H2AXA DNA BINDING |
AT1G04480 | PredictedAffinity Capture-MS | FSW = 0.0083
| Unknown | 60S RIBOSOMAL PROTEIN L23 (RPL23A) |
AT4G12600 | PredictedAffinity Capture-MS | FSW = 0.0147
| Unknown | RIBOSOMAL PROTEIN L7AE/L30E/S12E/GADD45 FAMILY PROTEIN |
AT1G22240 | PredictedAffinity Capture-MS | FSW = 0.0158
| Unknown | APUM8 (ARABIDOPSIS PUMILIO 8) RNA BINDING / BINDING |
AT1G06080 | PredictedAffinity Capture-MS | FSW = 0.0894
| Unknown | ADS1 (DELTA 9 DESATURASE 1) OXIDOREDUCTASE |
AT1G25260 | PredictedAffinity Capture-MS | FSW = 0.0216
| Unknown | ACIDIC RIBOSOMAL PROTEIN P0-RELATED |
AT1G15250 | PredictedAffinity Capture-MS | FSW = 0.0476
| Unknown | 60S RIBOSOMAL PROTEIN L37 (RPL37A) |
AT5G46840 | PredictedAffinity Capture-MS | FSW = 0.0067
| Unknown | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
AT1G43900 | PredictedAffinity Capture-Western | FSW = 0.0166
| Unknown | PROTEIN PHOSPHATASE 2C PUTATIVE / PP2C PUTATIVE |
AT3G50860 | Predictedinterologs mapping | FSW = 0.0204
| Unknown | CLATHRIN ADAPTOR COMPLEX SMALL CHAIN FAMILY PROTEIN |
AT1G09080 | Predictedinterologs mapping | FSW = 0.0617
| Unknown | BIP3 ATP BINDING |
AT2G34980 | Predictedtwo hybrid | FSW = 0.1449
| Unknown | SETH1 PHOSPHATIDYLINOSITOL N-ACETYLGLUCOSAMINYLTRANSFERASE/ TRANSFERASE |
AT2G22730 | Predictedtwo hybrid | FSW = 0.0744
| Unknown | TRANSPORTER-RELATED |
AT2G18770 | Predictedtwo hybrid | FSW = 0.1423
| Unknown | SIGNAL RECOGNITION PARTICLE BINDING |
AT1G13580 | Predictedtwo hybrid | FSW = 0.0348
| Unknown | LAG13 (LAG1 LONGEVITY ASSURANCE HOMOLOG 3) |
AT1G14290 | Predictedtwo hybrid | FSW = 0.1569
| Unknown | SBH2 (SPHINGOID BASE HYDROXYLASE 2) CATALYTIC/ SPHINGOSINE HYDROXYLASE |
AT3G06460 | Predictedtwo hybrid | FSW = 0.1231
| Unknown | GNS1/SUR4 MEMBRANE FAMILY PROTEIN |
AT1G24470 | Predictedtwo hybrid | FSW = 0.1787
| Unknown | SHORT-CHAIN DEHYDROGENASE/REDUCTASE (SDR) FAMILY PROTEIN |
AT1G16570 | Predictedtwo hybrid | FSW = 0.1191
| Unknown | GLYCOSYL TRANSFERASE FAMILY 1 PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454