Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Welcome to AtPIN
AtPIN will be upgraded. Please send your suggestions here
AT2G22530 - ( catalytic/ transferase )
48 Proteins interacs with AT2G22530Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G61790 | PredictedPhenotypic Enhancement | FSW = 0.2009
| Unknown | CALNEXIN 1 (CNX1) |
AT2G01720 | PredictedPhenotypic Enhancement | FSW = 0.2421
| Unknown | RIBOPHORIN I FAMILY PROTEIN |
AT1G33140 | PredictedSynthetic Lethality | FSW = 0.0226
| Unknown | PGY2 (PIGGYBACK2) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT5G66680 | PredictedPhenotypic Enhancement | FSW = 0.2449
| Unknown | DGL1 DOLICHYL-DIPHOSPHOOLIGOSACCHARIDE-PROTEIN GLYCOTRANSFERASE |
AT1G31780 | PredictedPhenotypic Enhancement | FSW = 0.1938
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S CONSERVED OLIGOMERIC COMPLEX COG6 (INTERPROIPR010490) HAS 281 BLAST HITS TO 279 PROTEINS IN 131 SPECIES ARCHAE - 0 BACTERIA - 2 METAZOA - 132 FUNGI - 106 PLANTS - 21 VIRUSES - 0 OTHER EUKARYOTES - 20 (SOURCE NCBI BLINK) |
AT2G45200 | PredictedPhenotypic Enhancement | FSW = 0.2545
| Unknown | GOS12 (GOLGI SNARE 12) SNARE BINDING |
AT3G07180 | PredictedPhenotypic Enhancement | FSW = 0.1047
| Unknown | GPI TRANSAMIDASE COMPONENT PIG-S-RELATED |
AT5G45130 | PredictedPhenotypic Enhancement | FSW = 0.0815
| Unknown | RHA1 (RAB HOMOLOG 1) GTP BINDING |
AT4G01320 | PredictedPhenotypic Enhancement | FSW = 0.1464
| Unknown | ATSTE24 ENDOPEPTIDASE/ METALLOENDOPEPTIDASE |
AT4G04910 | PredictedPhenotypic Enhancement | FSW = 0.0554
| Unknown | NSF (N-ETHYLMALEIMIDE SENSITIVE FACTOR) ATP BINDING / BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
AT2G30710 | PredictedPhenotypic Enhancement | FSW = 0.2635
| Unknown | RABGAP/TBC DOMAIN-CONTAINING PROTEIN |
AT3G62870 | Predictedsynthetic growth defect | FSW = 0.0126
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
AT5G13710 | PredictedPhenotypic Enhancement | FSW = 0.0541
| Unknown | SMT1 (STEROL METHYLTRANSFERASE 1) STEROL 24-C-METHYLTRANSFERASE |
AT1G09760 | PredictedSynthetic Lethality | FSW = 0.0180
| Unknown | U2A (U2 SMALL NUCLEAR RIBONUCLEOPROTEIN A) PROTEIN BINDING |
AT5G63840 | PredictedPhenotypic Enhancement | FSW = 0.2222
| Unknown | RSW3 (RADIAL SWELLING 3) GLUCOSIDASE/ HYDROLASE HYDROLYZING O-GLYCOSYL COMPOUNDS |
AT5G23630 | PredictedPhenotypic EnhancementSynthetic Lethality | FSW = 0.2254
| Unknown | ATPASE E1-E2 TYPE FAMILY PROTEIN / HALOACID DEHALOGENASE-LIKE HYDROLASE FAMILIY PROTEIN |
AT1G11890 | PredictedPhenotypic Enhancement | FSW = 0.0950
| Unknown | SEC22 TRANSPORTER |
AT1G07670 | PredictedPhenotypic Enhancement | FSW = 0.2792
| Unknown | CALCIUM-TRANSPORTING ATPASE |
AT4G29810 | PredictedSynthetic Rescue | FSW = 0.0242
| Unknown | ATMKK2 (ARABIDOPSIS THALIANA MAP KINASE KINASE 2) MAP KINASE KINASE/ KINASE |
AT5G17550 | PredictedSynthetic Lethality | FSW = 0.0108
| Unknown | PEX19-2 |
AT2G17520 | PredictedPhenotypic Enhancement | FSW = 0.2127
| Unknown | IRE1A ENDORIBONUCLEASE/ KINASE |
AT5G18280 | PredictedPhenotypic Enhancement | FSW = 0.2705
| Unknown | ATAPY2 (ARABIDOPSIS THALIANA APYRASE 2) ATPASE/ NUCLEOTIDE DIPHOSPHATASE |
AT1G71270 | PredictedPhenotypic Enhancement | FSW = 0.1136
| Unknown | POK (POKY POLLEN TUBE) |
AT1G67490 | PredictedPhenotypic Enhancement | FSW = 0.3057
| Unknown | GCS1 (GLUCOSIDASE 1) ALPHA-GLUCOSIDASE |
AT2G39630 | PredictedPhenotypic Enhancement | FSW = 0.2138
| Unknown | GLYCOSYL TRANSFERASE FAMILY 2 PROTEIN |
AT3G05710 | PredictedPhenotypic Enhancement | FSW = 0.1512
| Unknown | SYP43 (SYNTAXIN OF PLANTS 43) SNAP RECEPTOR |
AT5G66020 | PredictedPhenotypic Enhancement | FSW = 0.0960
| Unknown | ATSAC1B (SUPPRESSOR OF ACTIN 1B) PHOSPHATIDYLINOSITOL-45-BISPHOSPHATE 5-PHOSPHATASE |
AT1G01020 | PredictedPhenotypic EnhancementPhenotypic Suppression | FSW = 0.1750
| Unknown | ARV1 |
AT5G38460 | PredictedPhenotypic Enhancement | FSW = 0.3664
| Unknown | ALG6 ALG8 GLYCOSYLTRANSFERASE FAMILY PROTEIN |
AT2G44660 | PredictedPhenotypic Enhancement | FSW = 0.2765
| Unknown | TRANSFERASE TRANSFERRING GLYCOSYL GROUPS / TRANSFERASE TRANSFERRING HEXOSYL GROUPS |
AT1G08750 | PredictedPhenotypic EnhancementPhenotypic Enhancement | FSW = 0.1926
| Unknown | GPI-ANCHOR TRANSAMIDASE PUTATIVE |
AT1G16560 | PredictedPhenotypic Enhancement | FSW = 0.3623
| Unknown | PER1-LIKE FAMILY PROTEIN |
AT1G57600 | PredictedPhenotypic Enhancement | FSW = 0.3036
| Unknown | MEMBRANE BOUND O-ACYL TRANSFERASE (MBOAT) FAMILY PROTEIN |
AT1G57860 | PredictedSynthetic Lethality | FSW = 0.0185
| Unknown | 60S RIBOSOMAL PROTEIN L21 |
AT1G79990 | PredictedPhenotypic Enhancement | FSW = 0.1420
| Unknown | LOCATED IN ENDOMEMBRANE SYSTEM COPI VESICLE COAT GOLGI MEMBRANE EXPRESSED IN 25 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S SYS1 HOMOLOGUE (INTERPROIPR016973) HAS 55556 BLAST HITS TO 24059 PROTEINS IN 620 SPECIES ARCHAE - 38 BACTERIA - 5697 METAZOA - 25539 FUNGI - 10898 PLANTS - 5309 VIRUSES - 0 OTHER EUKARYOTES - 8075 (SOURCE NCBI BLINK) |
AT1G20575 | PredictedPhenotypic Enhancement | FSW = 0.1833
| Unknown | DOLICHYL-PHOSPHATE BETA-D-MANNOSYLTRANSFERASE PUTATIVE / DOLICHOL-PHOSPHATE MANNOSYLTRANSFERASE PUTATIVE / MANNOSE-P-DOLICHOL SYNTHASE PUTATIVE |
AT1G26450 | PredictedPhenotypic Enhancement | FSW = 0.3431
| Unknown | BETA-13-GLUCANASE-RELATED |
AT2G34980 | Predictedtwo hybrid | FSW = 0.0798
| Unknown | SETH1 PHOSPHATIDYLINOSITOL N-ACETYLGLUCOSAMINYLTRANSFERASE/ TRANSFERASE |
AT3G50860 | PredictedPhenotypic Enhancement | FSW = 0.1889
| Unknown | CLATHRIN ADAPTOR COMPLEX SMALL CHAIN FAMILY PROTEIN |
AT4G16970 | PredictedSynthetic Lethality | FSW = 0.0119
| Unknown | ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT4G17910 | PredictedPhenotypic Enhancement | FSW = 0.1091
| Unknown | TRANSFERASE TRANSFERRING ACYL GROUPS |
AT5G65990 | Predictedtwo hybrid | FSW = 0.0203
| Unknown | AMINO ACID TRANSPORTER FAMILY PROTEIN |
AT2G39340 | PredictedSynthetic Lethality | FSW = 0.0385
| Unknown | SAC3/GANP FAMILY PROTEIN |
AT2G43790 | PredictedSynthetic Rescue | FSW = 0.0149
| Unknown | ATMPK6 (ARABIDOPSIS THALIANA MAP KINASE 6) MAP KINASE/ KINASE |
AT4G08500 | PredictedSynthetic Lethality | FSW = 0.0755
| Unknown | MEKK1 (MAP KINASE KINASE KINASE 1) DNA BINDING / MAP KINASE KINASE KINASE/ KINASE/ KINASE BINDING / PROTEIN BINDING |
AT4G16700 | Predictedinterologs mappinginterologs mapping | FSW = 0.0301
| Unknown | PSD1 (PHOSPHATIDYLSERINE DECARBOXYLASE 1) PHOSPHATIDYLSERINE DECARBOXYLASE |
AT5G13780 | PredictedSynthetic Lethality | FSW = 0.0144
| Unknown | GCN5-RELATED N-ACETYLTRANSFERASE PUTATIVE |
AT5G17250 | Predictedinterologs mapping | FSW = 0.0678
| Unknown | CATALYTIC/ TRANSFERASE |
Downloads
Quick help
Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454