Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G22780 - ( PMDH1 (PEROXISOMAL NAD-MALATE DEHYDROGENASE 1) L-malate dehydrogenase/ binding / catalytic/ malate dehydrogenase/ oxidoreductase/ oxidoreductase acting on the CH-OH group of donors NAD or NADP as acceptor )

25 Proteins interacs with AT2G22780
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT3G46090

Experimental

FSW = 0.0122

Unknown

ZAT7 NUCLEIC ACID BINDING / TRANSCRIPTION FACTOR/ ZINC ION BINDING
AT5G09660

Predicted

Enriched domain pair

Gene fusion method

Phylogenetic profile method

Co-expression

FSW = 0.0378

Class C:

plastid

peroxisome

PMDH2 (PEROXISOMAL NAD-MALATE DEHYDROGENASE 2) MALATE DEHYDROGENASE
AT2G36160

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1703

Class C:

plastid

40S RIBOSOMAL PROTEIN S14 (RPS14A)
AT3G47520

Predicted

Enriched domain pair

Phylogenetic profile method

Co-expression

FSW = 0.0341

Class C:

plastid

MDH (MALATE DEHYDROGENASE) L-MALATE DEHYDROGENASE/ BINDING / CATALYTIC/ MALATE DEHYDROGENASE/ OXIDOREDUCTASE/ OXIDOREDUCTASE ACTING ON THE CH-OH GROUP OF DONORS NAD OR NADP AS ACCEPTOR
AT3G20390

Predicted

Affinity Capture-MS

FSW = 0.1805

Class C:

plastid

ENDORIBONUCLEASE L-PSP FAMILY PROTEIN
AT1G18540

Predicted

Affinity Capture-MS

FSW = 0.1699

Class C:

plastid

60S RIBOSOMAL PROTEIN L6 (RPL6A)
AT3G16950

Predicted

Affinity Capture-MS

FSW = 0.0447

Class C:

plastid

LPD1 (LIPOAMIDE DEHYDROGENASE 1) DIHYDROLIPOYL DEHYDROGENASE
AT5G20010

Predicted

Affinity Capture-MS

FSW = 0.1565

Class C:

peroxisome

RAN-1 GTP BINDING / GTPASE/ PROTEIN BINDING
AT2G19860

Predicted

Affinity Capture-MS

FSW = 0.0512

Unknown

HXK2 (HEXOKINASE 2) ATP BINDING / FRUCTOKINASE/ GLUCOKINASE/ HEXOKINASE
AT3G47370

Predicted

Affinity Capture-MS

FSW = 0.0380

Unknown

40S RIBOSOMAL PROTEIN S20 (RPS20B)
AT4G17260

Predicted

Enriched domain pair

Phylogenetic profile method

Co-expression

FSW = 0.2688

Unknown

L-LACTATE DEHYDROGENASE PUTATIVE
AT1G11250

Predicted

Affinity Capture-MS

FSW = 0.1624

Unknown

SYP125 (SYNTAXIN OF PLANTS 125) SNAP RECEPTOR
AT2G37470

Predicted

Affinity Capture-MS

FSW = 0.0288

Unknown

HISTONE H2B PUTATIVE
AT3G15020

Predicted

Enriched domain pair

Phylogenetic profile method

Co-expression

FSW = 0.3750

Unknown

MALATE DEHYDROGENASE (NAD) MITOCHONDRIAL PUTATIVE
AT1G53240

Predicted

Enriched domain pair

Phylogenetic profile method

Co-expression

FSW = 0.1452

Unknown

MALATE DEHYDROGENASE (NAD) MITOCHONDRIAL
AT2G18450

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2139

Unknown

SDH1-2 SUCCINATE DEHYDROGENASE
AT4G33720

Predicted

Synthetic Lethality

FSW = 0.0248

Unknown

PATHOGENESIS-RELATED PROTEIN PUTATIVE
AT2G16090

Predicted

Affinity Capture-MS

FSW = 0.1916

Unknown

ZINC FINGER PROTEIN-RELATED
AT2G21250

Predicted

Affinity Capture-MS

FSW = 0.0660

Unknown

MANNOSE 6-PHOSPHATE REDUCTASE (NADPH-DEPENDENT) PUTATIVE
AT1G34760

Predicted

interologs mapping

FSW = 0.0229

Unknown

GRF11 (GENERAL REGULATORY FACTOR 11) ATPASE BINDING / AMINO ACID BINDING / PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING
AT1G78290

Predicted

Affinity Capture-MS

FSW = 0.0454

Unknown

SERINE/THREONINE PROTEIN KINASE PUTATIVE
AT5G17000

Predicted

interologs mapping

Synthetic Rescue

FSW = 0.0819

Unknown

NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE
AT5G46150

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1607

Unknown

LEM3 (LIGAND-EFFECT MODULATOR 3) FAMILY PROTEIN / CDC50 FAMILY PROTEIN
AT4G11330

Predicted

Affinity Capture-MS

FSW = 0.1234

Unknown

ATMPK5 (MAP KINASE 5) MAP KINASE/ KINASE
AT4G36800

Predicted

Affinity Capture-MS

FSW = 0.1883

Unknown

RCE1 (RUB1 CONJUGATING ENZYME 1) NEDD8 LIGASE/ SMALL CONJUGATING PROTEIN LIGASE

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454