Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G22780 - ( PMDH1 (PEROXISOMAL NAD-MALATE DEHYDROGENASE 1) L-malate dehydrogenase/ binding / catalytic/ malate dehydrogenase/ oxidoreductase/ oxidoreductase acting on the CH-OH group of donors NAD or NADP as acceptor )
25 Proteins interacs with AT2G22780Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G46090 | Experimental | FSW = 0.0122
| Unknown | ZAT7 NUCLEIC ACID BINDING / TRANSCRIPTION FACTOR/ ZINC ION BINDING |
AT5G09660 | PredictedEnriched domain pairGene fusion methodPhylogenetic profile methodCo-expression | FSW = 0.0378
| Class C:plastidperoxisome | PMDH2 (PEROXISOMAL NAD-MALATE DEHYDROGENASE 2) MALATE DEHYDROGENASE |
AT2G36160 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1703
| Class C:plastid | 40S RIBOSOMAL PROTEIN S14 (RPS14A) |
AT3G47520 | PredictedEnriched domain pairPhylogenetic profile methodCo-expression | FSW = 0.0341
| Class C:plastid | MDH (MALATE DEHYDROGENASE) L-MALATE DEHYDROGENASE/ BINDING / CATALYTIC/ MALATE DEHYDROGENASE/ OXIDOREDUCTASE/ OXIDOREDUCTASE ACTING ON THE CH-OH GROUP OF DONORS NAD OR NADP AS ACCEPTOR |
AT3G20390 | PredictedAffinity Capture-MS | FSW = 0.1805
| Class C:plastid | ENDORIBONUCLEASE L-PSP FAMILY PROTEIN |
AT1G18540 | PredictedAffinity Capture-MS | FSW = 0.1699
| Class C:plastid | 60S RIBOSOMAL PROTEIN L6 (RPL6A) |
AT3G16950 | PredictedAffinity Capture-MS | FSW = 0.0447
| Class C:plastid | LPD1 (LIPOAMIDE DEHYDROGENASE 1) DIHYDROLIPOYL DEHYDROGENASE |
AT5G20010 | PredictedAffinity Capture-MS | FSW = 0.1565
| Class C:peroxisome | RAN-1 GTP BINDING / GTPASE/ PROTEIN BINDING |
AT2G19860 | PredictedAffinity Capture-MS | FSW = 0.0512
| Unknown | HXK2 (HEXOKINASE 2) ATP BINDING / FRUCTOKINASE/ GLUCOKINASE/ HEXOKINASE |
AT3G47370 | PredictedAffinity Capture-MS | FSW = 0.0380
| Unknown | 40S RIBOSOMAL PROTEIN S20 (RPS20B) |
AT4G17260 | PredictedEnriched domain pairPhylogenetic profile methodCo-expression | FSW = 0.2688
| Unknown | L-LACTATE DEHYDROGENASE PUTATIVE |
AT1G11250 | PredictedAffinity Capture-MS | FSW = 0.1624
| Unknown | SYP125 (SYNTAXIN OF PLANTS 125) SNAP RECEPTOR |
AT2G37470 | PredictedAffinity Capture-MS | FSW = 0.0288
| Unknown | HISTONE H2B PUTATIVE |
AT3G15020 | PredictedEnriched domain pairPhylogenetic profile methodCo-expression | FSW = 0.3750
| Unknown | MALATE DEHYDROGENASE (NAD) MITOCHONDRIAL PUTATIVE |
AT1G53240 | PredictedEnriched domain pairPhylogenetic profile methodCo-expression | FSW = 0.1452
| Unknown | MALATE DEHYDROGENASE (NAD) MITOCHONDRIAL |
AT2G18450 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2139
| Unknown | SDH1-2 SUCCINATE DEHYDROGENASE |
AT4G33720 | PredictedSynthetic Lethality | FSW = 0.0248
| Unknown | PATHOGENESIS-RELATED PROTEIN PUTATIVE |
AT2G16090 | PredictedAffinity Capture-MS | FSW = 0.1916
| Unknown | ZINC FINGER PROTEIN-RELATED |
AT2G21250 | PredictedAffinity Capture-MS | FSW = 0.0660
| Unknown | MANNOSE 6-PHOSPHATE REDUCTASE (NADPH-DEPENDENT) PUTATIVE |
AT1G34760 | Predictedinterologs mapping | FSW = 0.0229
| Unknown | GRF11 (GENERAL REGULATORY FACTOR 11) ATPASE BINDING / AMINO ACID BINDING / PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT1G78290 | PredictedAffinity Capture-MS | FSW = 0.0454
| Unknown | SERINE/THREONINE PROTEIN KINASE PUTATIVE |
AT5G17000 | Predictedinterologs mappingSynthetic Rescue | FSW = 0.0819
| Unknown | NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE |
AT5G46150 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1607
| Unknown | LEM3 (LIGAND-EFFECT MODULATOR 3) FAMILY PROTEIN / CDC50 FAMILY PROTEIN |
AT4G11330 | PredictedAffinity Capture-MS | FSW = 0.1234
| Unknown | ATMPK5 (MAP KINASE 5) MAP KINASE/ KINASE |
AT4G36800 | PredictedAffinity Capture-MS | FSW = 0.1883
| Unknown | RCE1 (RUB1 CONJUGATING ENZYME 1) NEDD8 LIGASE/ SMALL CONJUGATING PROTEIN LIGASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454