Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G23420 - ( NAPRT2 (NICOTINATE PHOSPHORIBOSYLTRANSFERASE 2) nicotinate phosphoribosyltransferase )
56 Proteins interacs with AT2G23420Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT2G05710 | Predictedsynthetic growth defectGene neighbors methodCo-expression | FSW = 0.0118
| Unknown | ACONITATE HYDRATASE CYTOPLASMIC PUTATIVE / CITRATE HYDRO-LYASE/ACONITASE PUTATIVE |
AT4G38495 | Predictedsynthetic growth defect | FSW = 0.0316
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN CONTAINS INTERPRO DOMAIN/S YL1 NUCLEAR C-TERMINAL (INTERPROIPR013272) HAS 189 BLAST HITS TO 189 PROTEINS IN 98 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 80 FUNGI - 83 PLANTS - 17 VIRUSES - 0 OTHER EUKARYOTES - 9 (SOURCE NCBI BLINK) |
AT5G51540 | Predictedsynthetic growth defect | FSW = 0.0180
| Unknown | METALLOENDOPEPTIDASE |
AT2G29720 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.0330
| Unknown | CTF2B MONOOXYGENASE/ OXIDOREDUCTASE |
AT2G01350 | PredictedSynthetic LethalitySynthetic LethalityGene neighbors methodCo-expression | FSW = 0.0200
| Unknown | QPT (QUINOLINATE PHOSHORIBOSYLTRANSFERASE) NICOTINATE-NUCLEOTIDE DIPHOSPHORYLASE (CARBOXYLATING) |
AT3G07670 | Predictedsynthetic growth defect | FSW = 0.0161
| Unknown | SET DOMAIN-CONTAINING PROTEIN |
AT3G25660 | Predictedsynthetic growth defect | FSW = 0.0604
| Unknown | GLUTAMYL-TRNA(GLN) AMIDOTRANSFERASE PUTATIVE |
AT3G11630 | Predictedsynthetic growth defect | FSW = 0.0801
| Unknown | 2-CYS PEROXIREDOXIN CHLOROPLAST (BAS1) |
AT1G62180 | Predictedsynthetic growth defect | FSW = 0.0452
| Unknown | APR2 (5ADENYLYLPHOSPHOSULFATE REDUCTASE 2) ADENYLYL-SULFATE REDUCTASE/ PHOSPHOADENYLYL-SULFATE REDUCTASE (THIOREDOXIN) |
AT2G41670 | Predictedsynthetic growth defect | FSW = 0.0361
| Unknown | GTP-BINDING FAMILY PROTEIN |
AT1G12520 | Predictedsynthetic growth defect | FSW = 0.1359
| Unknown | ATCCS (COPPER CHAPERONE FOR SOD1) SUPEROXIDE DISMUTASE/ SUPEROXIDE DISMUTASE COPPER CHAPERONE |
AT5G09260 | Predictedsynthetic growth defect | FSW = 0.1693
| Unknown | VPS202 (VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 202) |
AT1G16300 | Predictedsynthetic growth defect | FSW = 0.0136
| Unknown | GAPCP-2 NAD OR NADH BINDING / BINDING / CATALYTIC/ GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE (PHOSPHORYLATING)/ GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE |
AT3G01310 | Predictedsynthetic growth defect | FSW = 0.0879
| Unknown | ACID PHOSPHATASE/ OXIDOREDUCTASE/ TRANSITION METAL ION BINDING |
AT2G26350 | Predictedsynthetic growth defect | FSW = 0.1875
| Unknown | PEX10 PROTEIN BINDING / ZINC ION BINDING |
AT3G04460 | Predictedsynthetic growth defect | FSW = 0.0571
| Unknown | PEX12 PROTEIN BINDING / ZINC ION BINDING |
AT1G03000 | Predictedsynthetic growth defect | FSW = 0.1152
| Unknown | PEX6 (PEROXIN 6) ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
AT3G03490 | Predictedsynthetic growth defect | FSW = 0.0284
| Unknown | PEX19-1 (PEROXIN 19-1) |
AT4G38130 | Predictedsynthetic growth defect | FSW = 0.0402
| Unknown | HD1 (HISTONE DEACETYLASE 1) BASAL TRANSCRIPTION REPRESSOR/ HISTONE DEACETYLASE/ PROTEIN BINDING |
AT5G22750 | Predictedsynthetic growth defect | FSW = 0.2743
| Unknown | RAD5 ATP BINDING / ATP-DEPENDENT HELICASE/ DNA BINDING / HELICASE/ HYDROLASE ACTING ON ACID ANHYDRIDES IN PHOSPHORUS-CONTAINING ANHYDRIDES / NUCLEIC ACID BINDING / PROTEIN BINDING / ZINC ION BINDING |
AT3G19210 | Predictedsynthetic growth defect | FSW = 0.2001
| Unknown | ATRAD54 (ARABIDOPSIS HOMOLOG OF RAD54) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING |
AT2G31970 | Predictedsynthetic growth defect | FSW = 0.1593
| Unknown | RAD50 ATP BINDING / NUCLEASE/ ZINC ION BINDING |
AT5G57450 | Predictedsynthetic growth defect | FSW = 0.1576
| Unknown | XRCC3 ATP BINDING / DAMAGED DNA BINDING / PROTEIN BINDING / SINGLE-STRANDED DNA BINDING |
AT5G54260 | Predictedsynthetic growth defect | FSW = 0.1562
| Unknown | MRE11 (MEIOTIC RECOMBINATION 11) ENDONUCLEASE/ EXONUCLEASE/ HYDROLASE/ MANGANESE ION BINDING / PROTEIN SERINE/THREONINE PHOSPHATASE |
AT5G20850 | Predictedsynthetic growth defect | FSW = 0.1119
| Unknown | ATRAD51 ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ DAMAGED DNA BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING / SEQUENCE-SPECIFIC DNA BINDING |
AT1G02080 | PredictedAffinity Capture-MS | FSW = 0.0299
| Unknown | TRANSCRIPTIONAL REGULATOR-RELATED |
AT5G09900 | PredictedAffinity Capture-MS | FSW = 0.0420
| Unknown | EMB2107 (EMBRYO DEFECTIVE 2107) |
AT1G64750 | PredictedAffinity Capture-MS | FSW = 0.0646
| Unknown | ATDSS1(I) (ARABIDOPSIS THALIANA DELETION OF SUV3 SUPRESSOR 1(I)) |
AT4G19006 | PredictedAffinity Capture-MS | FSW = 0.0381
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT PUTATIVE (RPN9) |
AT5G23540 | PredictedAffinity Capture-MS | FSW = 0.0457
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT PUTATIVE |
AT5G26180 | PredictedAffinity Capture-MS | FSW = 0.0169
| Unknown | NOL1/NOP2/SUN FAMILY PROTEIN |
AT3G11270 | PredictedAffinity Capture-MS | FSW = 0.0722
| Unknown | MEE34 (MATERNAL EFFECT EMBRYO ARREST 34) |
AT5G26680 | Predictedsynthetic growth defect | FSW = 0.1505
| Unknown | ENDONUCLEASE PUTATIVE |
AT3G58560 | Predictedsynthetic growth defect | FSW = 0.1541
| Unknown | ENDONUCLEASE/EXONUCLEASE/PHOSPHATASE FAMILY PROTEIN |
AT3G42660 | Predictedsynthetic growth defect | FSW = 0.1745
| Unknown | NUCLEOTIDE BINDING |
AT3G02820 | Predictedsynthetic growth defect | FSW = 0.1600
| Unknown | ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN |
AT2G44580 | Predictedsynthetic growth defect | FSW = 0.2231
| Unknown | PROTEIN BINDING / ZINC ION BINDING |
AT4G11920 | Predictedsynthetic growth defect | FSW = 0.2140
| Unknown | CCS52A2 SIGNAL TRANSDUCER |
AT1G04730 | Predictedsynthetic growth defect | FSW = 0.1783
| Unknown | AAA-TYPE ATPASE FAMILY PROTEIN |
AT2G37550 | Predictedsynthetic growth defect | FSW = 0.0369
| Unknown | AGD7 ARF GTPASE ACTIVATOR/ DNA BINDING / ZINC ION BINDING |
AT5G04430 | Predictedsynthetic growth defect | FSW = 0.0214
| Unknown | BTR1L (BINDING TO TOMV RNA 1L (LONG FORM)) NUCLEIC ACID BINDING |
AT5G25760 | Predictedsynthetic growth defect | FSW = 0.0672
| Unknown | PEX4 (PEROXIN4) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT2G44150 | Predictedsynthetic growth defect | FSW = 0.0328
| Unknown | ASHH3 (HISTONE-LYSINE N-METHYLTRANSFERASE ASHH3) HISTONE-LYSINE N-METHYLTRANSFERASE |
AT5G08565 | Predictedsynthetic growth defect | FSW = 0.0223
| Unknown | POSITIVE TRANSCRIPTION ELONGATION FACTOR/ ZINC ION BINDING |
AT5G48630 | Predictedsynthetic growth defect | FSW = 0.0448
| Unknown | CYCLIN FAMILY PROTEIN |
AT5G04920 | Predictedsynthetic growth defect | FSW = 0.2157
| Unknown | VACUOLAR PROTEIN SORTING 36 FAMILY PROTEIN / VPS36 FAMILY PROTEIN |
AT1G14230 | Predictedsynthetic growth defect | FSW = 0.0194
| Unknown | NUCLEOSIDE PHOSPHATASE FAMILY PROTEIN / GDA1/CD39 FAMILY PROTEIN |
AT1G80410 | Predictedsynthetic growth defectSynthetic Lethality | FSW = 0.1952
| Unknown | EMB2753 (EMBRYO DEFECTIVE 2753) BINDING |
AT1G66740 | Predictedsynthetic growth defect | FSW = 0.1244
| Unknown | SGA2 |
AT1G15920 | Predictedsynthetic growth defect | FSW = 0.2037
| Unknown | CCR4-NOT TRANSCRIPTION COMPLEX PROTEIN PUTATIVE |
AT1G14400 | Predictedsynthetic growth defect | FSW = 0.2091
| Unknown | UBC1 (UBIQUITIN CARRIER PROTEIN 1) UBIQUITIN-PROTEIN LIGASE |
AT1G10930 | Predictedsynthetic growth defect | FSW = 0.1623
| Unknown | RECQ4A ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING |
AT5G13780 | PredictedSynthetic Lethality | FSW = 0.1809
| Unknown | GCN5-RELATED N-ACETYLTRANSFERASE PUTATIVE |
AT1G64600 | PredictedSynthetic Lethality | FSW = 0.0104
| Unknown | COPPER ION BINDING / METHYLTRANSFERASE |
AT3G21300 | PredictedSynthetic Lethality | FSW = 0.0169
| Unknown | RNA METHYLTRANSFERASE FAMILY PROTEIN |
AT4G36940 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.0542
| Unknown | NAPRT1 (NICOTINATE PHOSPHORIBOSYLTRANSFERASE 1) NICOTINATE PHOSPHORIBOSYLTRANSFERASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454