Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G23460 - ( XLG1 (EXTRA-LARGE G-PROTEIN 1) guanyl nucleotide binding / signal transducer )

27 Proteins interacs with AT2G23460
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT5G20010

Predicted

Affinity Capture-MS

FSW = 0.3022

Class C:

nucleus

RAN-1 GTP BINDING / GTPASE/ PROTEIN BINDING
AT3G47370

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0984

Class C:

nucleus

40S RIBOSOMAL PROTEIN S20 (RPS20B)
AT1G31930

Predicted

Phylogenetic profile method

FSW = 0.0580

Class C:

nucleus

XLG3 (EXTRA-LARGE GTP-BINDING PROTEIN 3) GUANYL NUCLEOTIDE BINDING / SIGNAL TRANSDUCER
AT4G34390

Predicted

Phylogenetic profile method

FSW = 0.0363

Class C:

nucleus

XLG2 (EXTRA-LARGE GTP-BINDING PROTEIN 2) GUANYL NUCLEOTIDE BINDING / SIGNAL TRANSDUCER
AT2G36160

Predicted

Affinity Capture-MS

FSW = 0.2733

Unknown

40S RIBOSOMAL PROTEIN S14 (RPS14A)
AT1G18540

Predicted

Affinity Capture-MS

FSW = 0.3615

Unknown

60S RIBOSOMAL PROTEIN L6 (RPL6A)
AT5G24400

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.3315

Unknown

EMB2024 (EMBRYO DEFECTIVE 2024) 6-PHOSPHOGLUCONOLACTONASE/ CATALYTIC
AT2G31170

Predicted

Affinity Capture-MS

FSW = 0.2327

Unknown

SYCO ARATH ATP BINDING / AMINOACYL-TRNA LIGASE/ CYSTEINE-TRNA LIGASE/ NUCLEOTIDE BINDING
AT1G21640

Predicted

Affinity Capture-MS

FSW = 0.2886

Unknown

NADK2 NAD+ KINASE/ CALMODULIN BINDING
AT3G61430

Predicted

Affinity Capture-MS

FSW = 0.3175

Unknown

PIP1A (PLASMA MEMBRANE INTRINSIC PROTEIN 1A) WATER CHANNEL
AT4G28950

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

FSW = 0.2552

Unknown

ROP9 (RHO-RELATED PROTEIN FROM PLANTS 9) GTP BINDING
AT1G63290

Predicted

Affinity Capture-MS

FSW = 0.3547

Unknown

RIBULOSE-PHOSPHATE 3-EPIMERASE CYTOSOLIC PUTATIVE / PENTOSE-5-PHOSPHATE 3-EPIMERASE PUTATIVE
AT1G11250

Predicted

Affinity Capture-MS

FSW = 0.3011

Unknown

SYP125 (SYNTAXIN OF PLANTS 125) SNAP RECEPTOR
AT2G47160

Predicted

Affinity Capture-MS

FSW = 0.0799

Unknown

BOR1 (REQUIRES HIGH BORON 1) ANION EXCHANGER/ BORON TRANSPORTER
AT2G18450

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.3025

Unknown

SDH1-2 SUCCINATE DEHYDROGENASE
AT3G16050

Predicted

Affinity Capture-MS

FSW = 0.0833

Unknown

A37 PROTEIN HETERODIMERIZATION
AT3G12530

Predicted

Affinity Capture-MS

FSW = 0.2547

Unknown

PSF2
AT1G05785

Predicted

Affinity Capture-MS

FSW = 0.1717

Unknown

GOT1-LIKE FAMILY PROTEIN
AT1G14310

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

co-fractionation

Co-fractionation

FSW = 0.2632

Unknown

HALOACID DEHALOGENASE-LIKE HYDROLASE FAMILY PROTEIN
AT1G54290

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2304

Unknown

EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 PUTATIVE
AT2G03040

Predicted

Affinity Capture-MS

FSW = 0.2976

Unknown

TRANSMEMBRANE PROTEIN-RELATED
AT3G47940

Predicted

Affinity Capture-MS

Affinity Capture-Western

FSW = 0.5418

Unknown

DNAJ HEAT SHOCK PROTEIN PUTATIVE
AT3G52390

Predicted

Affinity Capture-MS

FSW = 0.1917

Unknown

TATD-RELATED DEOXYRIBONUCLEASE FAMILY PROTEIN
AT4G04700

Predicted

Affinity Capture-MS

FSW = 0.0100

Unknown

CPK27 ATP BINDING / CALCIUM ION BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE
AT5G41190

Predicted

Affinity Capture-MS

FSW = 0.0816

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NIN ONE BINDING (NOB1) ZN-RIBBON LIKE (INTERPROIPR014881) D-SITE 20S PRE-RRNA NUCLEASE (INTERPROIPR017117) HAS 855 BLAST HITS TO 653 PROTEINS IN 196 SPECIES ARCHAE - 53 BACTERIA - 16 METAZOA - 335 FUNGI - 168 PLANTS - 29 VIRUSES - 10 OTHER EUKARYOTES - 244 (SOURCE NCBI BLINK)
AT5G46150

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2419

Unknown

LEM3 (LIGAND-EFFECT MODULATOR 3) FAMILY PROTEIN / CDC50 FAMILY PROTEIN
AT5G67380

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2371

Unknown

CKA1 (CASEIN KINASE ALPHA 1) KINASE

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Fasta sequences:

Proteins

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454