Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G23820 - ( metal-dependent phosphohydrolase HD domain-containing protein )
36 Proteins interacs with AT2G23820Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT2G17360 | PredictedPhenotypic Suppression | FSW = 0.0257
| Unknown | 40S RIBOSOMAL PROTEIN S4 (RPS4A) |
AT3G62870 | Predictedsynthetic growth defect | FSW = 0.0283
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
AT3G22890 | PredictedSynthetic Lethalitysynthetic growth defect | FSW = 0.0660
| Unknown | APS1 (ATP SULFURYLASE 1) SULFATE ADENYLYLTRANSFERASE (ATP) |
AT5G09660 | PredictedPhenotypic Enhancement | FSW = 0.1352
| Unknown | PMDH2 (PEROXISOMAL NAD-MALATE DEHYDROGENASE 2) MALATE DEHYDROGENASE |
AT3G48170 | PredictedPhenotypic Suppression | FSW = 0.1051
| Unknown | ALDH10A9 3-CHLOROALLYL ALDEHYDE DEHYDROGENASE/ OXIDOREDUCTASE |
AT2G40400 | PredictedAffinity Capture-MS | FSW = 0.0237
| Unknown | UNKNOWN PROTEIN |
AT1G26160 | PredictedPhylogenetic profile method | FSW = 0.0114
| Unknown | METAL-DEPENDENT PHOSPHOHYDROLASE HD DOMAIN-CONTAINING PROTEIN |
AT3G13560 | PredictedAffinity Capture-MS | FSW = 0.0230
| Unknown | GLYCOSYL HYDROLASE FAMILY 17 PROTEIN |
AT5G48545 | PredictedPhenotypic Enhancement | FSW = 0.1253
| Unknown | HISTIDINE TRIAD FAMILY PROTEIN / HIT FAMILY PROTEIN |
AT3G13460 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1082
| Unknown | ECT2 PROTEIN BINDING |
AT1G28460 | PredictedPhenotypic Enhancement | FSW = 0.0345
| Unknown | AGL59 (AGAMOUS-LIKE 59) DNA BINDING / TRANSCRIPTION FACTOR |
AT4G25340 | PredictedPhenotypic Enhancement | FSW = 0.0358
| Unknown | IMMUNOPHILIN-RELATED / FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED |
AT1G18320 | Predictedtwo hybrid | FSW = 0.0684
| Unknown | MITOCHONDRIAL IMPORT INNER MEMBRANE TRANSLOCASE SUBUNIT TIM17/TIM22/TIM23 FAMILY PROTEIN |
AT1G64880 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Western | FSW = 0.4826
| Unknown | RIBOSOMAL PROTEIN S5 FAMILY PROTEIN |
AT5G02730 | PredictedPhenotypic Suppression | FSW = 0.0599
| Unknown | ALLERGEN V5/TPX-1-RELATED FAMILY PROTEIN |
AT1G77990 | PredictedAffinity Capture-MS | FSW = 0.1351
| Unknown | AST56 SULFATE TRANSMEMBRANE TRANSPORTER |
AT3G12280 | PredictedPhenotypic Enhancement | FSW = 0.0082
| Unknown | RBR1 (RETINOBLASTOMA-RELATED 1) TRANSCRIPTION FACTOR BINDING |
AT1G21370 | PredictedPhenotypic Enhancement | FSW = 0.0593
| Unknown | UNKNOWN PROTEIN |
AT1G27320 | PredictedPhenotypic Enhancement | FSW = 0.0248
| Unknown | AHK3 (ARABIDOPSIS HISTIDINE KINASE 3) CYTOKININ RECEPTOR/ OSMOSENSOR/ PROTEIN HISTIDINE KINASE |
AT1G80710 | PredictedPhenotypic Suppression | FSW = 0.0349
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT2G20290 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1084
| Unknown | XIG MOTOR/ PROTEIN BINDING |
AT1G25510 | PredictedAffinity Capture-MS | FSW = 0.0529
| Unknown | ASPARTYL PROTEASE FAMILY PROTEIN |
AT4G21490 | PredictedPhenotypic Enhancement | FSW = 0.0897
| Unknown | NDB3 NADH DEHYDROGENASE |
AT4G34370 | Predictedtwo hybrid | FSW = 0.0225
| Unknown | ARI1 (ARIADNE) PROTEIN BINDING / ZINC ION BINDING |
AT5G13860 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1146
| Unknown | ELC-LIKE (ELCH-LIKE) SMALL CONJUGATING PROTEIN LIGASE |
AT5G17860 | PredictedPhenotypic Suppression | FSW = 0.1200
| Unknown | CAX7 (CALCIUM EXCHANGER 7) CALCIUMSODIUM ANTIPORTER/ CATIONCATION ANTIPORTER |
AT5G66360 | PredictedAffinity Capture-MS | FSW = 0.0504
| Unknown | RIBOSOMAL RNA ADENINE DIMETHYLASE FAMILY PROTEIN |
AT2G31260 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0734
| Unknown | APG9 (AUTOPHAGY 9) |
AT2G31900 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0675
| Unknown | XIF MOTOR |
AT3G22290 | PredictedPhenotypic Enhancement | FSW = 0.0877
| Unknown | UNKNOWN PROTEIN |
AT3G50780 | PredictedPhenotypic Suppression | FSW = 0.0233
| Unknown | INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS PRLI-INTERACTING FACTOR-RELATED (TAIRAT1G638501) HAS 173 BLAST HITS TO 173 PROTEINS IN 14 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 8 FUNGI - 0 PLANTS - 164 VIRUSES - 0 OTHER EUKARYOTES - 1 (SOURCE NCBI BLINK) |
AT5G01770 | PredictedPhenotypic Enhancement | FSW = 0.0833
| Unknown | RAPTOR2 (RAPTOR2) BINDING / NUCLEOTIDE BINDING |
AT5G04800 | PredictedPhenotypic Enhancement | FSW = 0.0385
| Unknown | 40S RIBOSOMAL PROTEIN S17 (RPS17D) |
AT5G14180 | PredictedAffinity Capture-MStwo hybridAffinity Capture-MS | FSW = 0.0726
| Unknown | MPL1 (MYZUS PERSICAE-INDUCED LIPASE 1) CATALYTIC |
AT5G45620 | PredictedPhenotypic Enhancement | FSW = 0.0998
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT PUTATIVE (RPN9) |
AT5G53300 | PredictedPhenotypic Enhancement | FSW = 0.0355
| Unknown | UBC10 (UBIQUITIN-CONJUGATING ENZYME 10) UBIQUITIN-PROTEIN LIGASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454