Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G24050 - ( MIF4G domain-containing protein / MA3 domain-containing protein )
20 Proteins interacs with AT2G24050Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G22290 | Experimentalpull down | FSW = 0.0711
| Unknown | ANAC089 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 89) TRANSCRIPTION FACTOR |
AT1G72730 | PredictedAffinity Capture-MS | FSW = 0.0376
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR 4A PUTATIVE / EIF-4A PUTATIVE |
AT4G16520 | PredictedAffinity Capture-MS | FSW = 0.0500
| Unknown | ATG8F (AUTOPHAGY 8F) MICROTUBULE BINDING |
AT5G57870 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.1202
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR 4F PUTATIVE / EIF-4F PUTATIVE |
AT1G10070 | Predictedbiochemical | FSW = 0.0279
| Unknown | ATBCAT-2 (ARABIDOPSIS THALIANA BRANCHED-CHAIN AMINO ACID TRANSAMINASE 2) BRANCHED-CHAIN-AMINO-ACID TRANSAMINASE/ CATALYTIC |
AT5G41060 | PredictedAffinity Capture-MS | FSW = 0.0750
| Unknown | ZINC FINGER (DHHC TYPE) FAMILY PROTEIN |
AT2G43810 | PredictedAffinity Capture-MS | FSW = 0.0049
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN F PUTATIVE / U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN PUTATIVE / SM PROTEIN F PUTATIVE |
AT2G13540 | Predictedin vivo | FSW = 0.1280
| Unknown | ABH1 (ABA HYPERSENSITIVE 1) RNA CAP BINDING |
AT5G61880 | PredictedAffinity Capture-MS | FSW = 0.0368
| Unknown | SIGNALING MOLECULE-RELATED |
AT2G03120 | PredictedAffinity Capture-MS | FSW = 0.0155
| Unknown | ATSPP (ARABIDOPSIS SIGNAL PEPTIDE PEPTIDASE) ASPARTIC-TYPE ENDOPEPTIDASE |
AT1G52300 | PredictedAffinity Capture-MS | FSW = 0.0284
| Unknown | 60S RIBOSOMAL PROTEIN L37 (RPL37B) |
AT4G10920 | PredictedAffinity Capture-MS | FSW = 0.0081
| Unknown | KELP DNA BINDING / TRANSCRIPTION COACTIVATOR/ TRANSCRIPTION REGULATOR |
AT1G49760 | Predictedin vivoin vitro | FSW = 0.0163
| Unknown | PAB8 (POLY(A) BINDING PROTEIN 8) RNA BINDING / TRANSLATION INITIATION FACTOR |
AT1G29590 | Predictedin vivo | FSW = 0.2143
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR 4E PUTATIVE / EIF-4E PUTATIVE / EIF4E PUTATIVE / MRNA CAP-BINDING PROTEIN PUTATIVE |
AT1G30220 | PredictedAffinity Capture-MS | FSW = 0.0692
| Unknown | INT2 (INOSITOL TRANSPORTER 2) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
AT1G60730 | PredictedAffinity Capture-MS | FSW = 0.0259
| Unknown | ALDO/KETO REDUCTASE FAMILY PROTEIN |
AT1G10210 | Predictedbiochemical | FSW = 0.0180
| Unknown | ATMPK1 (MITOGEN-ACTIVATED PROTEIN KINASE 1) MAP KINASE/ KINASE |
AT2G43190 | PredictedAffinity Capture-MS | FSW = 0.0116
| Unknown | RIBONUCLEASE P FAMILY PROTEIN |
AT3G13060 | PredictedAffinity Capture-MS | FSW = 0.0500
| Unknown | ECT5 FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S YT521-B-LIKE PROTEIN (INTERPROIPR007275) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS ECT2 PROTEIN BINDING (TAIRAT3G134601) HAS 1007 BLAST HITS TO 965 PROTEINS IN 147 SPECIES ARCHAE - 0 BACTERIA - 8 METAZOA - 528 FUNGI - 103 PLANTS - 235 VIRUSES - 0 OTHER EUKARYOTES - 133 (SOURCE NCBI BLINK) |
AT5G02560 | PredictedAffinity Capture-MS | FSW = 0.0158
| Unknown | HTA12 DNA BINDING |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454