Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Welcome to AtPIN
AtPIN will be upgraded. Please send your suggestions here
AT2G24960 - ( unknown protein )
84 Proteins interacs with AT2G24960Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G47520 | PredictedPhenotypic Enhancement | FSW = 0.1315
| Unknown | MDH (MALATE DEHYDROGENASE) L-MALATE DEHYDROGENASE/ BINDING / CATALYTIC/ MALATE DEHYDROGENASE/ OXIDOREDUCTASE/ OXIDOREDUCTASE ACTING ON THE CH-OH GROUP OF DONORS NAD OR NADP AS ACCEPTOR |
AT5G09590 | PredictedSynthetic LethalityPhenotypic Enhancement | FSW = 0.1999
| Unknown | MTHSC70-2 (MITOCHONDRIAL HSP70 2) ATP BINDING |
AT3G15710 | PredictedPhenotypic Enhancement | FSW = 0.0428
| Unknown | SIGNAL PEPTIDASE PUTATIVE |
AT4G21980 | PredictedPhenotypic Suppression | FSW = 0.0679
| Unknown | APG8A (AUTOPHAGY 8A) APG8 ACTIVATING ENZYME/ APG8-SPECIFIC PROTEASE/ ATG8 LIGASE |
AT3G30390 | PredictedPhenotypic Suppression | FSW = 0.0710
| Unknown | AMINO ACID TRANSPORTER FAMILY PROTEIN |
AT3G22110 | PredictedPhenotypic Suppression | FSW = 0.0504
| Unknown | PAC1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT5G09660 | Predictedsynthetic growth defect | FSW = 0.1860
| Unknown | PMDH2 (PEROXISOMAL NAD-MALATE DEHYDROGENASE 2) MALATE DEHYDROGENASE |
AT1G74710 | PredictedSynthetic Lethality | FSW = 0.1321
| Unknown | ISOCHORISMATE SYNTHASE 1 (ICS1) / ISOCHORISMATE MUTASE |
AT5G65430 | PredictedPhenotypic Enhancement | FSW = 0.1306
| Unknown | GRF8 (GENERAL REGULATORY FACTOR 8) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT1G55920 | PredictedPhenotypic Enhancement | FSW = 0.1981
| Unknown | ATSERAT21 (SERINE ACETYLTRANSFERASE 21) SERINE O-ACETYLTRANSFERASE |
AT3G55400 | PredictedPhenotypic SuppressionSynthetic Lethality | FSW = 0.1303
| Unknown | OVA1 (OVULE ABORTION 1) ATP BINDING / AMINOACYL-TRNA LIGASE/ METHIONINE-TRNA LIGASE/ NUCLEOTIDE BINDING |
AT2G40400 | PredictedPhenotypic Enhancement | FSW = 0.0783
| Unknown | UNKNOWN PROTEIN |
AT1G56050 | PredictedPhenotypic Enhancement | FSW = 0.1607
| Unknown | GTP-BINDING PROTEIN-RELATED |
AT2G45300 | PredictedPhenotypic Enhancement | FSW = 0.0570
| Unknown | 3-PHOSPHOSHIKIMATE 1-CARBOXYVINYLTRANSFERASE / 5-ENOLPYRUVYLSHIKIMATE-3-PHOSPHATE / EPSP SYNTHASE |
AT5G51820 | PredictedPhenotypic Suppression | FSW = 0.1264
| Unknown | PGM (PHOSPHOGLUCOMUTASE) PHOSPHOGLUCOMUTASE |
AT3G54670 | PredictedPhenotypic EnhancementPhenotypic Enhancement | FSW = 0.1291
| Unknown | TTN8 (TITAN8) ATP BINDING / TRANSPORTER |
AT5G17990 | PredictedPhenotypic Suppression | FSW = 0.0483
| Unknown | TRP1 (TRYPTOPHAN BIOSYNTHESIS 1) ANTHRANILATE PHOSPHORIBOSYLTRANSFERASE |
AT5G08570 | PredictedPhenotypic Enhancement | FSW = 0.0271
| Unknown | PYRUVATE KINASE PUTATIVE |
AT3G19930 | PredictedPhenotypic Enhancement | FSW = 0.1771
| Unknown | STP4 (SUGAR TRANSPORTER 4) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ MONOSACCHARIDE TRANSMEMBRANE TRANSPORTER/ SUCROSEHYDROGEN SYMPORTER/ SUGARHYDROGEN SYMPORTER |
AT2G39480 | PredictedPhenotypic Enhancement | FSW = 0.1593
| Unknown | PGP6 (P-GLYCOPROTEIN 6) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES |
AT4G18800 | PredictedPhenotypic Enhancement | FSW = 0.1223
| Unknown | ATRABA1D (ARABIDOPSIS RAB GTPASE HOMOLOG A1D) GTP BINDING |
AT2G37790 | PredictedPhenotypic Enhancement | FSW = 0.1887
| Unknown | ALDO/KETO REDUCTASE FAMILY PROTEIN |
AT2G34450 | PredictedPhenotypic Enhancement | FSW = 0.1891
| Unknown | HIGH MOBILITY GROUP (HMG1/2) FAMILY PROTEIN |
AT3G13445 | PredictedPhenotypic EnhancementPhenotypic Enhancement | FSW = 0.1023
| Unknown | TBP1 (TATA BINDING PROTEIN 1) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ BINDING |
AT1G01210 | PredictedPhenotypic Enhancement | FSW = 0.0609
| Unknown | DNA-DIRECTED RNA POLYMERASE III FAMILY PROTEIN |
AT1G76300 | PredictedPhenotypic EnhancementPhenotypic Enhancement | FSW = 0.1645
| Unknown | SMD3 (SNRNP CORE PROTEIN SMD3) |
AT1G56110 | PredictedPhenotypic Enhancement | FSW = 0.0393
| Unknown | NOP56 (ARABIDOPSIS HOMOLOG OF NUCLEOLAR PROTEIN NOP56) |
AT4G31720 | PredictedAffinity Capture-MS | FSW = 0.0215
| Unknown | TAFII15 (TBP-ASSOCIATED FACTOR II 15) RNA POLYMERASE II TRANSCRIPTION FACTOR/ TRANSCRIPTION FACTOR |
AT2G38880 | PredictedPhenotypic Enhancement | FSW = 0.0463
| Unknown | NF-YB1 (NUCLEAR FACTOR Y SUBUNIT B1) TRANSCRIPTION FACTOR |
AT3G29800 | PredictedPhenotypic Enhancement | FSW = 0.1100
| Unknown | AAA-TYPE ATPASE FAMILY |
AT1G29330 | PredictedSynthetic LethalityAffinity Capture-Westerninterologs mappingSynthetic Lethalitytwo hybridReconstituted ComplexPhenotypic Enhancement | FSW = 0.0593
| Unknown | ERD2 (ENDOPLASMIC RETICULUM RETENTION DEFECTIVE 2) KDEL SEQUENCE BINDING / RECEPTOR |
AT3G18480 | PredictedPhenotypic Enhancement | FSW = 0.1000
| Unknown | ATCASP (ARABIDOPSIS THALIANA CCAAT-DISPLACEMENT PROTEIN ALTERNATIVELY SPLICED PRODUCT) |
AT5G02730 | PredictedPhenotypic Enhancement | FSW = 0.0690
| Unknown | ALLERGEN V5/TPX-1-RELATED FAMILY PROTEIN |
AT3G54840 | PredictedPhenotypic Suppression | FSW = 0.1924
| Unknown | ARA6 GTP BINDING / GTPASE |
AT4G16420 | PredictedSynthetic LethalitySynthetic LethalityPhenotypic Enhancement | FSW = 0.1083
| Unknown | ADA2B (HOMOLOG OF YEAST ADA2 2B) DNA BINDING / TRANSCRIPTION COACTIVATOR/ TRANSCRIPTION FACTOR |
AT5G28060 | PredictedPhenotypic Enhancement | FSW = 0.1342
| Unknown | 40S RIBOSOMAL PROTEIN S24 (RPS24B) |
AT4G15900 | PredictedPhenotypic Enhancement | FSW = 0.0495
| Unknown | PRL1 (PLEIOTROPIC REGULATORY LOCUS 1) BASAL TRANSCRIPTION REPRESSOR/ NUCLEOTIDE BINDING / PROTEIN BINDING |
AT3G20050 | PredictedPhenotypic Enhancement | FSW = 0.0071
| Unknown | ATTCP-1 ATP BINDING / PROTEIN BINDING / UNFOLDED PROTEIN BINDING |
AT1G09810 | PredictedPhenotypic Enhancement | FSW = 0.0556
| Unknown | ECT11 (EVOLUTIONARILY CONSERVED C-TERMINAL REGION 11) |
AT1G49520 | PredictedPhenotypic Suppression | FSW = 0.1258
| Unknown | SWIB COMPLEX BAF60B DOMAIN-CONTAINING PROTEIN |
AT1G61670 | PredictedPhenotypic Enhancement | FSW = 0.1045
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN LOCATED IN ENDOMEMBRANE SYSTEM INTEGRAL TO MEMBRANE CONTAINS INTERPRO DOMAIN/S TRANSMEMBRANE RECEPTOR EUKARYOTA (INTERPROIPR009637) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G109801) HAS 473 BLAST HITS TO 471 PROTEINS IN 125 SPECIES ARCHAE - 0 BACTERIA - 2 METAZOA - 242 FUNGI - 99 PLANTS - 92 VIRUSES - 0 OTHER EUKARYOTES - 38 (SOURCE NCBI BLINK) |
AT1G64170 | PredictedPhenotypic Enhancement | FSW = 0.0273
| Unknown | ATCHX16 (CATION/H+ EXCHANGER 16) MONOVALENT CATIONPROTON ANTIPORTER/ SODIUMHYDROGEN ANTIPORTER |
AT1G66740 | PredictedPhenotypic Enhancement | FSW = 0.0228
| Unknown | SGA2 |
AT1G76920 | PredictedPhenotypic Enhancement | FSW = 0.1600
| Unknown | F-BOX FAMILY PROTEIN (FBX3) |
AT2G23070 | PredictedPhenotypic Enhancement | FSW = 0.0732
| Unknown | CASEIN KINASE II ALPHA CHAIN PUTATIVE |
AT1G20693 | Predictedsynthetic growth defect | FSW = 0.3249
| Unknown | HMGB2 (HIGH MOBILITY GROUP B 2) DNA BINDING / CHROMATIN BINDING / STRUCTURAL CONSTITUENT OF CHROMATIN / TRANSCRIPTION FACTOR |
AT1G25155 | PredictedSynthetic Lethality | FSW = 0.1779
| Unknown | ANTHRANILATE SYNTHASE BETA SUBUNIT PUTATIVE |
AT1G35350 | Predictedsynthetic growth defect | FSW = 0.2220
| Unknown | LOCATED IN INTEGRAL TO MEMBRANE EXPRESSED IN 18 PLANT STRUCTURES EXPRESSED DURING 9 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S EXS C-TERMINAL (INTERPROIPR004342) SPX N-TERMINAL (INTERPROIPR004331) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS EXS FAMILY PROTEIN / ERD1/XPR1/SYG1 FAMILY PROTEIN (TAIRAT1G267301) HAS 734 BLAST HITS TO 697 PROTEINS IN 158 SPECIES ARCHAE - 0 BACTERIA - 21 METAZOA - 234 FUNGI - 245 PLANTS - 125 VIRUSES - 0 OTHER EUKARYOTES - 109 (SOURCE NCBI BLINK) |
AT1G47830 | Predictedsynthetic growth defect | FSW = 0.1430
| Unknown | CLATHRIN COAT ASSEMBLY PROTEIN PUTATIVE |
AT1G52500 | PredictedPhenotypic Suppression | FSW = 0.0964
| Unknown | ATMMH-1 (ARABIDOPSIS THALIANA MUTM HOMOLOG-1) DNA N-GLYCOSYLASE |
AT1G66590 | Predictedsynthetic growth defect | FSW = 0.1163
| Unknown | COX19 FAMILY PROTEIN |
AT1G78770 | Predictedsynthetic growth defect | FSW = 0.2002
| Unknown | CELL DIVISION CYCLE FAMILY PROTEIN |
AT3G05960 | PredictedPhenotypic Enhancement | FSW = 0.0476
| Unknown | STP6 (SUGAR TRANSPORTER 6) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ MONOSACCHARIDE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
AT3G09800 | PredictedSynthetic LethalityPhenotypic Enhancement | FSW = 0.1302
| Unknown | PROTEIN BINDING |
AT3G17520 | PredictedPhenotypic Enhancement | FSW = 0.0440
| Unknown | LATE EMBRYOGENESIS ABUNDANT DOMAIN-CONTAINING PROTEIN / LEA DOMAIN-CONTAINING PROTEIN |
AT3G18520 | PredictedPhenotypic Enhancement | FSW = 0.0074
| Unknown | HDA15 HISTONE DEACETYLASE |
AT3G18660 | PredictedSynthetic Lethality | FSW = 0.1581
| Unknown | PGSIP1 (PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN 1) TRANSFERASE TRANSFERRING GLYCOSYL GROUPS |
AT3G22290 | Predictedsynthetic growth defect | FSW = 0.1448
| Unknown | UNKNOWN PROTEIN |
AT3G24010 | PredictedSynthetic Lethality | FSW = 0.1515
| Unknown | ING1 (INHIBITOR OF GROWTH 1) DNA BINDING / METHYLATED HISTONE RESIDUE BINDING |
AT3G25900 | Predictedsynthetic growth defectPhenotypic Enhancement | FSW = 0.1770
| Unknown | HMT-1 HOMOCYSTEINE S-METHYLTRANSFERASE |
AT3G53030 | PredictedSynthetic Lethality | FSW = 0.1435
| Unknown | SRPK4 (SER/ARG-RICH PROTEIN KINASE 4) KINASE/ PROTEIN KINASE |
AT4G21490 | Predictedsynthetic growth defect | FSW = 0.1888
| Unknown | NDB3 NADH DEHYDROGENASE |
AT4G22330 | PredictedPhenotypic Enhancement | FSW = 0.0505
| Unknown | ATCES1 CATALYTIC/ HYDROLASE ACTING ON CARBON-NITROGEN (BUT NOT PEPTIDE) BONDS IN LINEAR AMIDES |
AT4G27130 | Predictedsynthetic growth defectPhenotypic Enhancement | FSW = 0.2460
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 PUTATIVE |
AT5G16170 | Predictedsynthetic growth defect | FSW = 0.1399
| Unknown | UNKNOWN PROTEIN |
AT5G16980 | Predictedsynthetic growth defect | FSW = 0.1981
| Unknown | NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE |
AT5G38890 | PredictedPhenotypic Enhancement | FSW = 0.0185
| Unknown | EXORIBONUCLEASE-RELATED |
AT5G45620 | PredictedSynthetic LethalityPhenotypic Suppression | FSW = 0.1938
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT PUTATIVE (RPN9) |
AT5G53120 | PredictedPhenotypic Enhancement | FSW = 0.1365
| Unknown | SPDS3 (SPERMIDINE SYNTHASE 3) SPERMIDINE SYNTHASE/ SPERMINE SYNTHASE |
AT2G34750 | PredictedPhenotypic Enhancement | FSW = 0.1865
| Unknown | RNA POLYMERASE I SPECIFIC TRANSCRIPTION INITIATION FACTOR RRN3 FAMILY PROTEIN |
AT2G38600 | PredictedPhenotypic Enhancement | FSW = 0.0507
| Unknown | ACID PHOSPHATASE CLASS B FAMILY PROTEIN |
AT2G47760 | PredictedPhenotypic Enhancement | FSW = 0.0372
| Unknown | ALG3 ALPHA-13-MANNOSYLTRANSFERASE/ CATALYTIC |
AT3G09640 | PredictedPhenotypic Enhancement | FSW = 0.1139
| Unknown | APX2 (ASCORBATE PEROXIDASE 2) L-ASCORBATE PEROXIDASE |
AT3G12200 | PredictedPhenotypic Suppression | FSW = 0.0388
| Unknown | ATNEK7 (NIMA-RELATED KINASE7) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
AT4G00800 | PredictedPhenotypic Suppression | FSW = 0.1236
| Unknown | BINDING / PROTEIN BINDING / ZINC ION BINDING |
AT4G04695 | PredictedPhenotypic Enhancement | FSW = 0.1229
| Unknown | CPK31 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
AT4G19645 | PredictedPhenotypic Enhancement | FSW = 0.0928
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN INTEGRAL TO MEMBRANE CONTAINS INTERPRO DOMAIN/S TRAM LAG1 AND CLN8 HOMOLOGY (INTERPROIPR006634) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G313002) HAS 401 BLAST HITS TO 401 PROTEINS IN 98 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 186 FUNGI - 102 PLANTS - 84 VIRUSES - 0 OTHER EUKARYOTES - 29 (SOURCE NCBI BLINK) |
AT5G04800 | PredictedPhenotypic Enhancement | FSW = 0.1632
| Unknown | 40S RIBOSOMAL PROTEIN S17 (RPS17D) |
AT5G13700 | PredictedPhenotypic Enhancement | FSW = 0.0288
| Unknown | ATPAO1 (ARABIDOPSIS THALIANA POLYAMINE OXIDASE 1) FAD BINDING / POLYAMINE OXIDASE |
AT5G44830 | PredictedPhenotypic Suppression | FSW = 0.2087
| Unknown | GLYCOSIDE HYDROLASE FAMILY 28 PROTEIN / POLYGALACTURONASE (PECTINASE) FAMILY PROTEIN |
AT5G49970 | PredictedPhenotypic Suppression | FSW = 0.1280
| Unknown | ATPPOX (A THALIANA PYRIDOXIN (PYRODOXAMINE) 5-PHOSPHATE OXIDASE) PYRIDOXAMINE-PHOSPHATE OXIDASE |
AT5G53300 | PredictedPhenotypic Enhancement | FSW = 0.0247
| Unknown | UBC10 (UBIQUITIN-CONJUGATING ENZYME 10) UBIQUITIN-PROTEIN LIGASE |
AT5G64760 | PredictedPhenotypic Enhancement | FSW = 0.1878
| Unknown | RPN5B (REGULATORY PARTICLE NON-ATPASE SUBUNIT 5B) |
AT5G67540 | PredictedPhenotypic Enhancement | FSW = 0.0920
| Unknown | GLYCOSYL HYDROLASE FAMILY PROTEIN 43 |
Downloads
Quick help
Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454