Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G25070 - ( protein phosphatase 2C putative / PP2C putative )

26 Proteins interacs with AT2G25070
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT5G15090

Predicted

Affinity Capture-MS

FSW = 0.0160

Class C:

plasma membrane

VDAC3 (VOLTAGE DEPENDENT ANION CHANNEL 3) VOLTAGE-GATED ANION CHANNEL
AT5G52640

Predicted

synthetic growth defect

FSW = 0.0061

Class C:

plasma membrane

ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING
AT4G31860

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.1838

Class C:

plasma membrane

PROTEIN PHOSPHATASE 2C PUTATIVE / PP2C PUTATIVE
AT1G62020

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0469

Class C:

plasma membrane

COATOMER PROTEIN COMPLEX SUBUNIT ALPHA PUTATIVE
AT1G05500

Predicted

Affinity Capture-MS

FSW = 0.0800

Class C:

plasma membrane

NTMC2T21
AT4G31750

Predicted

synthetic growth defect

Phylogenetic profile method

Co-expression

FSW = 0.2404

Class C:

plasma membrane

WIN2 (HOPW1-1-INTERACTING 2) PROTEIN SERINE/THREONINE PHOSPHATASE
AT3G62870

Predicted

synthetic growth defect

FSW = 0.0098

Unknown

60S RIBOSOMAL PROTEIN L7A (RPL7AB)
AT1G80380

Predicted

Affinity Capture-MS

FSW = 0.0920

Unknown

PHOSPHORIBULOKINASE/URIDINE KINASE-RELATED
AT5G57015

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0313

Unknown

CKL12 (CASEIN KINASE I-LIKE 12) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT1G03930

Predicted

Affinity Capture-MS

FSW = 0.0417

Unknown

ADK1 (DUAL SPECIFICITY KINASE 1) KINASE/ PROTEIN SERINE/THREONINE/TYROSINE KINASE
AT1G14980

Predicted

interaction prediction

two hybrid

FSW = 0.0632

Unknown

CPN10 (CHAPERONIN 10) CHAPERONE BINDING
AT5G08335

Predicted

Affinity Capture-MS

FSW = 0.0128

Unknown

ATSTE14B PROTEIN-S-ISOPRENYLCYSTEINE O-METHYLTRANSFERASE
AT2G31970

Predicted

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

FSW = 0.0211

Unknown

RAD50 ATP BINDING / NUCLEASE/ ZINC ION BINDING
AT2G18230

Predicted

Affinity Capture-MS

FSW = 0.0473

Unknown

ATPPA2 (ARABIDOPSIS THALIANA PYROPHOSPHORYLASE 2) INORGANIC DIPHOSPHATASE/ PYROPHOSPHATASE
AT4G35290

Predicted

in vitro

in vivo

FSW = 0.0282

Unknown

GLUR2 (GLUTAMATE RECEPTOR 2) INTRACELLULAR LIGAND-GATED ION CHANNEL
AT1G31660

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0329

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S BYSTIN (INTERPROIPR007955) HAS 370 BLAST HITS TO 362 PROTEINS IN 156 SPECIES ARCHAE - 0 BACTERIA - 7 METAZOA - 139 FUNGI - 93 PLANTS - 32 VIRUSES - 0 OTHER EUKARYOTES - 99 (SOURCE NCBI BLINK)
AT1G42440

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0504

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN RIBOSOME BIOGENESIS LOCATED IN NUCLEUS EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S AARP2CN (INTERPROIPR012948) PROTEIN OF UNKNOWN FUNCTION DUF663 (INTERPROIPR007034) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G067201) HAS 2447 BLAST HITS TO 1812 PROTEINS IN 205 SPECIES ARCHAE - 0 BACTERIA - 115 METAZOA - 903 FUNGI - 423 PLANTS - 100 VIRUSES - 53 OTHER EUKARYOTES - 853 (SOURCE NCBI BLINK)
AT1G60490

Predicted

Affinity Capture-MS

FSW = 0.0688

Unknown

ATVPS34 1-PHOSPHATIDYLINOSITOL-3-KINASE/ BINDING / INOSITOL OR PHOSPHATIDYLINOSITOL KINASE/ PHOSPHOTRANSFERASE ALCOHOL GROUP AS ACCEPTOR
AT2G22480

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0286

Unknown

PFK5 (PHOSPHOFRUCTOKINASE 5) 6-PHOSPHOFRUCTOKINASE
AT2G17820

Predicted

interologs mapping

interologs mapping

FSW = 0.1000

Unknown

ATHK1 (HISTIDINE KINASE 1) HISTIDINE PHOSPHOTRANSFER KINASE/ OSMOSENSOR/ PROTEIN HISTIDINE KINASE
AT2G34180

Predicted

Affinity Capture-MS

FSW = 0.0422

Unknown

CIPK13 (CBL-INTERACTING PROTEIN KINASE 13) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT4G04210

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0406

Unknown

PUX4 PROTEIN BINDING
AT5G14240

Predicted

interologs mapping

FSW = 0.0368

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S THIOREDOXIN FOLD (INTERPROIPR012335) PHOSDUCIN (INTERPROIPR001200) THIOREDOXIN-LIKE FOLD (INTERPROIPR012336) HAS 750 BLAST HITS TO 750 PROTEINS IN 282 SPECIES ARCHAE - 0 BACTERIA - 2 METAZOA - 486 FUNGI - 126 PLANTS - 51 VIRUSES - 0 OTHER EUKARYOTES - 85 (SOURCE NCBI BLINK)
AT4G29380

Predicted

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

FSW = 0.1214

Unknown

PROTEIN KINASE FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT1G27320

Predicted

interologs mapping

interologs mapping

FSW = 0.0128

Unknown

AHK3 (ARABIDOPSIS HISTIDINE KINASE 3) CYTOKININ RECEPTOR/ OSMOSENSOR/ PROTEIN HISTIDINE KINASE
AT2G20630

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.1048

Unknown

PROTEIN PHOSPHATASE 2C PUTATIVE / PP2C PUTATIVE

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Fasta sequences:

Proteins

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454