Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G25280 - ( FUNCTIONS IN molecular_function unknown INVOLVED IN biological_process unknown LOCATED IN cellular_component unknown EXPRESSED IN 22 plant structures EXPRESSED DURING 13 growth stages CONTAINS InterPro DOMAIN/s Mediator of ErbB2-driven cell motility (Memo) related (InterProIPR002737) Has 742 Blast hits to 742 proteins in 323 species Archae - 138 Bacteria - 240 Metazoa - 132 Fungi - 82 Plants - 26 Viruses - 0 Other Eukaryotes - 124 (source NCBI BLink) )

11 Proteins interacs with AT2G25280
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT2G47610

Predicted

two hybrid

two hybrid

FSW = 0.0253

Unknown

60S RIBOSOMAL PROTEIN L7A (RPL7AA)
AT3G62870

Predicted

two hybrid

FSW = 0.0079

Unknown

60S RIBOSOMAL PROTEIN L7A (RPL7AB)
AT1G74710

Predicted

synthetic growth defect

FSW = 0.0541

Unknown

ISOCHORISMATE SYNTHASE 1 (ICS1) / ISOCHORISMATE MUTASE
AT1G20693

Predicted

synthetic growth defect

FSW = 0.1230

Unknown

HMGB2 (HIGH MOBILITY GROUP B 2) DNA BINDING / CHROMATIN BINDING / STRUCTURAL CONSTITUENT OF CHROMATIN / TRANSCRIPTION FACTOR
AT1G25155Predicted

synthetic growth defect

FSW = 0.0649

Unknown

ANTHRANILATE SYNTHASE BETA SUBUNIT PUTATIVE
AT1G66590

Predicted

two hybrid

FSW = 0.0840

Unknown

COX19 FAMILY PROTEIN
AT1G78770

Predicted

Synthetic Lethality

FSW = 0.0797

Unknown

CELL DIVISION CYCLE FAMILY PROTEIN
AT3G18660

Predicted

synthetic growth defect

FSW = 0.0727

Unknown

PGSIP1 (PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN 1) TRANSFERASE TRANSFERRING GLYCOSYL GROUPS
AT3G25900

Predicted

Synthetic Lethality

FSW = 0.1013

Unknown

HMT-1 HOMOCYSTEINE S-METHYLTRANSFERASE
AT5G16170

Predicted

synthetic growth defect

FSW = 0.1778

Unknown

UNKNOWN PROTEIN
AT5G45620

Predicted

Synthetic Lethality

FSW = 0.0865

Unknown

26S PROTEASOME REGULATORY SUBUNIT PUTATIVE (RPN9)

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454