Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G25340 - ( ATVAMP712 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 712) )
17 Proteins interacs with AT2G25340Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT2G33120 | PredictedGene neighbors methodPhylogenetic profile method | FSW = 0.1701
| Class C:vacuole | SAR1 (SYNAPTOBREVIN-RELATED PROTEIN 1) |
AT4G32150 | PredictedGene fusion methodPhylogenetic profile methodCo-expression | FSW = 0.6667
| Class C:vacuole | ATVAMP711 (ARABIDOPSIS THALIANA VESICLE-ASSOCIATED MEMBRANE PROTEIN 711) |
AT3G56190 | PredictedAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-Westernco-fractionationCo-fractionation | FSW = 0.1574
| Class C:vacuole | ALPHA-SNAP2 (ALPHA-SOLUBLE NSF ATTACHMENT PROTEIN 2) BINDING / SOLUBLE NSF ATTACHMENT PROTEIN |
AT5G22360 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.6000
| Class C:vacuole | ATVAMP714 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 714) |
AT1G62040 | PredictedAffinity Capture-Western | FSW = 0.1455
| Class C:vacuole | ATG8C (AUTOPHAGY 8C) MICROTUBULE BINDING |
AT5G11150 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.5563
| Class C:vacuole | ATVAMP713 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 713) |
AT5G58060 | PredictedAffinity Capture-WesternAffinity Capture-Westerninterologs mapping | FSW = 0.2449
| Unknown | YKT61 |
AT1G27770 | PredictedAffinity Capture-Western | FSW = 0.0320
| Unknown | ACA1 (AUTO-INHIBITED CA2+-ATPASE 1) CALCIUM CHANNEL/ CALCIUM-TRANSPORTING ATPASE/ CALMODULIN BINDING |
AT1G04760 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.5046
| Unknown | ATVAMP726 |
AT1G11890 | PredictedReconstituted Complex | FSW = 0.0432
| Unknown | SEC22 TRANSPORTER |
AT1G04750 | PredictedGene fusion methodPhylogenetic profile methodCo-expression | FSW = 0.0697
| Unknown | VAMP721 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 721) |
AT1G26670 | PredictedAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternEnriched domain pairCo-expression | FSW = 0.2308
| Unknown | VTI1B SNARE BINDING / RECEPTOR/ SOLUBLE NSF ATTACHMENT PROTEIN |
AT4G15780 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.4608
| Unknown | ATVAMP724 |
AT3G24350 | PredictedReconstituted ComplexEnriched domain pairCo-expression | FSW = 0.1091
| Unknown | SYP32 (SYNTAXIN OF PLANTS 32) SNAP RECEPTOR |
AT3G54300 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.2857
| Unknown | ATVAMP727 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 727) |
AT1G08190 | PredictedAffinity Capture-Western | FSW = 0.0591
| Unknown | VACUOLAR ASSEMBLY PROTEIN PUTATIVE (VPS41) |
AT1G16225 | PredictedReconstituted ComplexReconstituted Complex | FSW = 0.2174
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN CONTAINS INTERPRO DOMAIN/S TARGET SNARE COILED-COIL REGION (INTERPROIPR000727) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS SYNTAXIN-RELATED FAMILY PROTEIN (TAIRAT1G162301) HAS 85 BLAST HITS TO 85 PROTEINS IN 27 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 0 FUNGI - 22 PLANTS - 56 VIRUSES - 0 OTHER EUKARYOTES - 7 (SOURCE NCBI BLINK) |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454