Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G25340 - ( ATVAMP712 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 712) )

17 Proteins interacs with AT2G25340
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT2G33120

Predicted

Gene neighbors method

Phylogenetic profile method

FSW = 0.1701

Class C:

vacuole

SAR1 (SYNAPTOBREVIN-RELATED PROTEIN 1)
AT4G32150

Predicted

Gene fusion method

Phylogenetic profile method

Co-expression

FSW = 0.6667

Class C:

vacuole

ATVAMP711 (ARABIDOPSIS THALIANA VESICLE-ASSOCIATED MEMBRANE PROTEIN 711)
AT3G56190

Predicted

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-Western

co-fractionation

Co-fractionation

FSW = 0.1574

Class C:

vacuole

ALPHA-SNAP2 (ALPHA-SOLUBLE NSF ATTACHMENT PROTEIN 2) BINDING / SOLUBLE NSF ATTACHMENT PROTEIN
AT5G22360

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.6000

Class C:

vacuole

ATVAMP714 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 714)
AT1G62040

Predicted

Affinity Capture-Western

FSW = 0.1455

Class C:

vacuole

ATG8C (AUTOPHAGY 8C) MICROTUBULE BINDING
AT5G11150

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.5563

Class C:

vacuole

ATVAMP713 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 713)
AT5G58060

Predicted

Affinity Capture-Western

Affinity Capture-Western

interologs mapping

FSW = 0.2449

Unknown

YKT61
AT1G27770

Predicted

Affinity Capture-Western

FSW = 0.0320

Unknown

ACA1 (AUTO-INHIBITED CA2+-ATPASE 1) CALCIUM CHANNEL/ CALCIUM-TRANSPORTING ATPASE/ CALMODULIN BINDING
AT1G04760

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.5046

Unknown

ATVAMP726
AT1G11890

Predicted

Reconstituted Complex

FSW = 0.0432

Unknown

SEC22 TRANSPORTER
AT1G04750

Predicted

Gene fusion method

Phylogenetic profile method

Co-expression

FSW = 0.0697

Unknown

VAMP721 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 721)
AT1G26670

Predicted

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-Western

Enriched domain pair

Co-expression

FSW = 0.2308

Unknown

VTI1B SNARE BINDING / RECEPTOR/ SOLUBLE NSF ATTACHMENT PROTEIN
AT4G15780

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.4608

Unknown

ATVAMP724
AT3G24350

Predicted

Reconstituted Complex

Enriched domain pair

Co-expression

FSW = 0.1091

Unknown

SYP32 (SYNTAXIN OF PLANTS 32) SNAP RECEPTOR
AT3G54300

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.2857

Unknown

ATVAMP727 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 727)
AT1G08190

Predicted

Affinity Capture-Western

FSW = 0.0591

Unknown

VACUOLAR ASSEMBLY PROTEIN PUTATIVE (VPS41)
AT1G16225

Predicted

Reconstituted Complex

Reconstituted Complex

FSW = 0.2174

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN CONTAINS INTERPRO DOMAIN/S TARGET SNARE COILED-COIL REGION (INTERPROIPR000727) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS SYNTAXIN-RELATED FAMILY PROTEIN (TAIRAT1G162301) HAS 85 BLAST HITS TO 85 PROTEINS IN 27 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 0 FUNGI - 22 PLANTS - 56 VIRUSES - 0 OTHER EUKARYOTES - 7 (SOURCE NCBI BLINK)

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454