Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G25490 - ( EBF1 (EIN3-BINDING F BOX PROTEIN 1) protein binding / ubiquitin-protein ligase )

47 Proteins interacs with AT2G25490
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT3G22630

Experimental

biochemical

FSW = 0.2113

Class D:

plastid (p = 0.78)

cytosol (p = 0.67)

 PBD1 (20S PROTEASOME BETA SUBUNIT D1) PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT1G53850

Experimental

biochemical

FSW = 0.2309

Class D:

cytosol (p = 0.67)

 PAE1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT2G27020

Experimental

biochemical

FSW = 0.3167

Class D:

cytosol (p = 0.67)

 PAG1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT3G22110

Experimental

biochemical

FSW = 0.0635

Class D:

mitochondrion (p = 0.82)

cytosol (p = 0.67)

 PAC1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT5G35590

Experimental

biochemical

FSW = 0.2646

Class D:

mitochondrion (p = 0.82)

cytosol (p = 0.67)

 PAA1 (PROTEASOME ALPHA SUBUNIT A 1) ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT4G14800

Experimental

biochemical

FSW = 0.2424

Class D:

cytosol (p = 0.67)

 PBD2 (20S PROTEASOME BETA SUBUNIT 2) PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT4G31300

Experimental

biochemical

FSW = 0.3293

Class D:

cytosol (p = 0.67)

 PBA1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT5G42980

Experimental

FSW = 0.0062

Class D:

cytosol (p = 0.67)

 ATTRX3 (THIOREDOXIN 3) OXIDOREDUCTASE ACTING ON SULFUR GROUP OF DONORS DISULFIDE AS ACCEPTOR
AT3G60820

Experimental

biochemical

FSW = 0.2132

Class D:

plastid (p = 0.78)

nucleus (p = 0.78)

mitochondrion (p = 0.82)

cytosol (p = 0.67)

 PBF1 PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT1G75950

Experimental

two hybrid

two hybrid

two hybrid

two hybrid

Reconstituted Complex

FSW = 0.0366

Class D:

cytosol (p = 0.67)

 SKP1 (S PHASE KINASE-ASSOCIATED PROTEIN 1) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT1G45000

Experimental

biochemical

FSW = 0.2807

Class D:

mitochondrion (p = 0.82)

cytosol (p = 0.67)

 26S PROTEASOME REGULATORY COMPLEX SUBUNIT P42D PUTATIVE
AT1G53750

Experimental

biochemical

FSW = 0.1959

Class D:

nucleus (p = 0.78)

cytosol (p = 0.67)

 RPT1A (REGULATORY PARTICLE TRIPLE-A 1A) ATPASE
AT5G19990

Experimental

biochemical

FSW = 0.1658

Class D:

nucleus (p = 0.78)

cytosol (p = 0.67)

 RPT6A (REGULATORY PARTICLE TRIPLE-A ATPASE 6A) ATPASE
AT1G20200

Experimental

biochemical

FSW = 0.2304

Class D:

nucleus (p = 0.78)

 EMB2719 (EMBRYO DEFECTIVE 2719) ENZYME REGULATOR
AT1G75990

Experimental

biochemical

FSW = 0.2766

Class D:

nucleus (p = 0.78)

 26S PROTEASOME REGULATORY SUBUNIT S3 PUTATIVE (RPN3)
AT5G42790

Experimental

biochemical

FSW = 0.3314

Class D:

mitochondrion (p = 0.82)

cytosol (p = 0.67)

 PAF1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT2G20580

Experimental

biochemical

FSW = 0.1546

Class D:

cytosol (p = 0.67)

 RPN1A (26S PROTEASOME REGULATORY SUBUNIT S2 1A) BINDING / ENZYME REGULATOR
AT3G05530

Experimental

biochemical

FSW = 0.2779

Class D:

nucleus (p = 0.78)

cytosol (p = 0.67)

 RPT5A (REGULATORY PARTICLE TRIPLE-A ATPASE 5A) ATPASE/ CALMODULIN BINDING
AT4G02570

Experimental

Phenotypic Enhancement

pull down

Reconstituted Complex

FSW = 0.0457

Class D:

plastid (p = 0.78)

cytosol (p = 0.67)

 ATCUL1 (ARABIDOPSIS THALIANA CULLIN 1) PROTEIN BINDING
AT5G58290

Experimental

biochemical

FSW = 0.2503

Class D:

nucleus (p = 0.78)

cytosol (p = 0.67)

 RPT3 (REGULATORY PARTICLE TRIPLE-A ATPASE 3) ATPASE
AT3G20770

Experimental

pull down

two hybrid

Reconstituted Complex

FSW = 0.0533

Class D:

nucleus (p = 0.78)

 EIN3 (ETHYLENE-INSENSITIVE3) TRANSCRIPTION FACTOR
AT2G27050

Experimental

two hybrid

FSW = 0.0640

Class D:

nucleus (p = 0.78)

 EIL1 (ETHYLENE-INSENSITIVE3-LIKE 1) TRANSCRIPTION FACTOR/ TRANSCRIPTION REGULATOR
AT2G05840

Experimental

biochemical

FSW = 0.1806

Class D:

mitochondrion (p = 0.82)

cytosol (p = 0.67)

 PAA2 (20S PROTEASOME SUBUNIT PAA2) ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT3G14290

Experimental

biochemical

FSW = 0.1352

Class D:

cytosol (p = 0.67)

 PAE2 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT5G42190

Experimental

two hybrid

two hybrid

two hybrid

FSW = 0.0299

Unknown

 ASK2 (ARABIDOPSIS SKP1-LIKE 2) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT4G34210

Experimental

two hybrid

two hybrid

FSW = 0.0762

Unknown

 ASK11 (ARABIDOPSIS SKP1-LIKE 11) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT4G34470

Experimental

two hybrid

FSW = 0.1018

Unknown

 ASK12 (ARABIDOPSIS SKP1-LIKE 12) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT1G10940

Experimental

pull down

FSW = 0.0186

Unknown

 SNRK24 (SNF1-RELATED PROTEIN KINASE 24) KINASE
AT4G29040

Experimental

biochemical

FSW = 0.3167

Unknown

 RPT2A (REGULATORY PARTICLE AAA-ATPASE 2A) ATPASE
AT1G53780

Experimental

biochemical

FSW = 0.2595

Unknown

 ATP BINDING / ATPASE/ HYDROLASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PEPTIDYL-PROLYL CIS-TRANS ISOMERASE
AT5G20000

Experimental

biochemical

FSW = 0.1407

Unknown

 26S PROTEASOME AAA-ATPASE SUBUNIT PUTATIVE
AT1G56450

Experimental

biochemical

FSW = 0.1846

Unknown

 PBG1 PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT5G23540

Experimental

biochemical

FSW = 0.2310

Unknown

 26S PROTEASOME REGULATORY SUBUNIT PUTATIVE
AT4G28470

Experimental

biochemical

FSW = 0.1150

Unknown

 RPN1B (26S PROTEASOME REGULATORY SUBUNIT S2 1B) BINDING / ENZYME REGULATOR
AT5G45620

Experimental

biochemical

FSW = 0.0922

Unknown

 26S PROTEASOME REGULATORY SUBUNIT PUTATIVE (RPN9)
AT5G09900

Experimental

biochemical

FSW = 0.2939

Unknown

 EMB2107 (EMBRYO DEFECTIVE 2107)
AT1G29150

Experimental

biochemical

FSW = 0.1588

Unknown

 ATS9 (ARABIDOPSIS NON-ATPASE SUBUNIT 9)
AT3G60010

Experimental

FSW = 0.0933

Unknown

 ASK13 (ARABIDOPSIS SKP1-LIKE 13) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT1G10230

Experimental

FSW = 0.1306

Unknown

 ASK18 (ARABIDOPSIS SKP1-LIKE 18) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT5G16630

Predicted

interaction prediction

FSW = 0.0133

Unknown

 RAD4 DAMAGED DNA BINDING
AT1G34210

Predicted

Gene fusion method

FSW = 0.0966

Unknown

 SERK2 (SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 2) KINASE
AT1G05120

Predicted

interaction prediction

FSW = 0.0144

Unknown

 SNF2 DOMAIN-CONTAINING PROTEIN / HELICASE DOMAIN-CONTAINING PROTEIN / RING FINGER DOMAIN-CONTAINING PROTEIN
AT3G13770

Predicted

Gene fusion method

FSW = 0.1451

Unknown

 PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN
AT5G27330

Predicted

Gene fusion method

FSW = 0.1348

Unknown

 LOCATED IN ENDOPLASMIC RETICULUM EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 12 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S PREFOLDIN (INTERPROIPR009053) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT3G051301) HAS 110457 BLAST HITS TO 56483 PROTEINS IN 2051 SPECIES ARCHAE - 1653 BACTERIA - 15111 METAZOA - 52441 FUNGI - 7858 PLANTS - 4309 VIRUSES - 584 OTHER EUKARYOTES - 28501 (SOURCE NCBI BLINK)
AT5G59140

Predicted

interaction prediction

FSW = 0.0252

Unknown

 SKP1 FAMILY PROTEIN
AT4G05320

Predicted

interaction prediction

FSW = 0.0141

Unknown

 UBQ10 (POLYUBIQUITIN 10) PROTEIN BINDING
AT1G21810

Predicted

Gene fusion method

FSW = 0.0950

Unknown

 FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 14 PLANT STRUCTURES EXPRESSED DURING 6 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S PROTEIN OF UNKNOWN FUNCTION DUF869 PLANT (INTERPROIPR008587) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS MYOSIN HEAVY CHAIN-RELATED (TAIRAT1G775802) HAS 62951 BLAST HITS TO 33517 PROTEINS IN 1593 SPECIES ARCHAE - 800 BACTERIA - 6354 METAZOA - 33836 FUNGI - 4765 PLANTS - 2651 VIRUSES - 311 OTHER EUKARYOTES - 14234 (SOURCE NCBI BLINK)

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Fasta sequences:

Proteins

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

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