Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G25840 - ( OVA4 (ovule abortion 4) ATP binding / aminoacyl-tRNA ligase/ nucleotide binding / tryptophan-tRNA ligase )

9 Proteins interacs with AT2G25840
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT2G33800

Predicted

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FSW = 0.1373

Class C:

plastid

 RIBOSOMAL PROTEIN S5 FAMILY PROTEIN
AT1G78630

Predicted

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FSW = 0.0850

Class C:

plastid

 EMB1473 (EMBRYO DEFECTIVE 1473) STRUCTURAL CONSTITUENT OF RIBOSOME
AT2G43030

Predicted

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FSW = 0.0295

Class C:

plastid

 RIBOSOMAL PROTEIN L3 FAMILY PROTEIN
ATCG00160Predicted

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FSW = 0.0575

Class C:

plastid

 CHLOROPLAST RIBOSOMAL PROTEIN S2
ATCG00380Predicted

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FSW = 0.0385

Class C:

plastid

 CHLOROPLAST ENCODED RIBOSOMAL PROTEIN S4
ATCG00810Predicted

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FSW = 0.0533

Class C:

plastid

 ENCODES A CHLOROPLAST RIBOSOMAL PROTEIN L22 A CONSTITUENT OF THE LARGE SUBUNIT OF THE RIBOSOMAL COMPLEX
AT2G45240

Predicted

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FSW = 0.3000

Unknown

 MAP1A (METHIONINE AMINOPEPTIDASE 1A) AMINOPEPTIDASE/ METALLOEXOPEPTIDASE
AT5G42210

Predicted

two hybrid

FSW = 0.0504

Unknown

 FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN ENDOMEMBRANE SYSTEM CONTAINS INTERPRO DOMAIN/S MAJOR FACILITATOR SUPERFAMILY MFS-1 (INTERPROIPR011701) MAJOR FACILITATOR SUPERFAMILY GENERAL SUBSTRATE TRANSPORTER (INTERPROIPR016196) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS TETRACYCLINE TRANSPORTER (TAIRAT2G169902) HAS 985 BLAST HITS TO 984 PROTEINS IN 348 SPECIES ARCHAE - 2 BACTERIA - 541 METAZOA - 251 FUNGI - 0 PLANTS - 39 VIRUSES - 0 OTHER EUKARYOTES - 152 (SOURCE NCBI BLINK)
AT2G16980

Predicted

two hybrid

FSW = 0.1262

Unknown

 TETRACYCLINE TRANSPORTER

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Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

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