Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Find locus: show subcellular location show Ontology

Export PPI as  



AtPIN will be upgraded. Please send your suggestions here

AT2G25930 - ( ELF3 (EARLY FLOWERING 3) protein C-terminus binding / transcription factor )

12 Proteins interacs with AT2G25930
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT3G09150

Experimental

Phenotypic Enhancement

FSW = 0.0443

Unknown

HY2 (ELONGATED HYPOCOTYL 2) PHYTOCHROMOBILINFERREDOXIN OXIDOREDUCTASE
AT5G57360

Experimental

Phenotypic Suppression

FSW = 0.1214

Class D:

nucleus (p = 0.78)

ZTL (ZEITLUPE) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT2G18790

Experimental

two hybrid

Phenotypic Enhancement

Reconstituted Complex

interologs mapping

in vitro

two hybrid

FSW = 0.1587

Class D:

nucleus (p = 0.78)

PHYB (PHYTOCHROME B) G-PROTEIN COUPLED PHOTORECEPTOR/ PROTEIN HISTIDINE KINASE/ RED OR FAR-RED LIGHT PHOTORECEPTOR/ SIGNAL TRANSDUCER
AT2G32950

Experimental

affinity technology

Affinity Capture-Western

two hybrid

biochemical

protein complementation assay

split-reporter assay

in vitro

FSW = 0.1782

Class D:

nucleus (p = 0.78)

COP1 (CONSTITUTIVE PHOTOMORPHOGENIC 1) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT1G09570

Experimental

Phenotypic Suppression

FSW = 0.1448

Unknown

PHYA (PHYTOCHROME A) G-PROTEIN COUPLED PHOTORECEPTOR/ PROTEIN HISTIDINE KINASE/ RED OR FAR-RED LIGHT PHOTORECEPTOR/ SIGNAL TRANSDUCER
AT1G22770

Experimental

two hybrid

protein complementation assay

split-reporter assay

FSW = 0.4083

Class D:

nucleus (p = 0.78)

GI (GIGANTEA)
AT5G15840

Experimental

Phenotypic Suppression

FSW = 0.1107

Class D:

nucleus (p = 0.78)

CO (CONSTANS) TRANSCRIPTION FACTOR/ TRANSCRIPTION REGULATOR/ ZINC ION BINDING
AT4G25530

Experimental

Phenotypic Suppression

FSW = 0.3214

Class D:

nucleus (p = 0.78)

FWA DNA BINDING / PROTEIN BINDING / PROTEIN HOMODIMERIZATION/ TRANSCRIPTION FACTOR
AT1G65480

Experimental

Phenotypic Suppression

FSW = 0.1793

Class D:

nucleus (p = 0.78)

FT (FLOWERING LOCUS T) PHOSPHATIDYLETHANOLAMINE BINDING / PROTEIN BINDING
AT4G02560

Experimental

Phenotypic Suppression

FSW = 0.2500

Class D:

nucleus (p = 0.78)

LD (LUMINIDEPENDENS) TRANSCRIPTION FACTOR
AT4G16280

Experimental

Phenotypic Suppression

FSW = 0.0711

Unknown

FCA RNA BINDING
AT3G22380

Experimental

Phenotypic Enhancement

Phenotypic Suppression

FSW = 0.1062

Unknown

TIC (TIME FOR COFFEE)

Downloads

Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

Learn more

How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454